TCONS_00053713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053713
Unique NameTCONS_00053713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053713 ID=TCONS_00053713|Name=TCONS_00053713|organism=Clytia hemisphaerica|type=transcript|length=790bp
CTGATAGCTGAAAATCCAGAAAGAAATTGATGATAATTTGTTGATATAAG
AATATAACTTAAGTAAGTGAGGCACTCAAAGTAGCTGATAGCTGAAAATC
CAGAAAGAAATTGATGATAATTTGTTGATATAAGAATATAACTTAAGTAA
GTGAGGCACTCAAGGTAGCTGATAGCTGAAAATCCAGAAAGAAATTGATG
ATAATTTGTTGATATAAGAATATAACTGAAGTAAGTGAGACACTCAAGGT
GAGCAAGCGACAGTCGGTACTGCAGATTCTCgctaatgggcttttccaga
aaaaaaccgtgcaccccctgttgaggagcttCAACCTTTTGTGaactacc
cccttggaattccaggcaattttaggatcatacccctctggaattccgaa
tttttacagattttcatccattacccccatggaattccacttatttttga
cggatttttgtcTACTGCTATGGAATTatactgcatttcaaaccataccc
ccttggaacagaaatggactcctcaacaggggatgcacagtttttttctg
gaaaaacccaaTTCGAACTTCTGTCAATGGAATCTCTATCTTATTCGAAT
AAATCAGACTCCAGGTTCGAACGAGTTAACACTATAAGCATGCTTCTACC
CTGAAAAAGTATTCCTCATGGTACTCTCATTTGTAAGAGCAGATAGGCTG
TTCATTACTCTCGCCTCTGCACGGatttaaaaaatggaaacaaaattgag
gtagaaaaatgttgaaagatccaattagtttttcaaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_233:64460..65249

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053713 ID=TCONS_00053713|Name=TCONS_00053713|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at scaffold_233:64460..65249 (Clytia hemisphaerica)
atttttgaaaaactaattggatctttcaacatttttctacctcaattttg
tttccattttttaaatCCGTGCAGAGGCGAGAGTAATGAACAGCCTATCT
GCTCTTACAAATGAGAGTACCATGAGGAATACTTTTTCAGGGTAGAAGCA
TGCTTATAGTGTTAACTCGTTCGAACCTGGAGTCTGATTTATTCGAATAA
GATAGAGATTCCATTGACAGAAGTTCGAAttgggtttttccagaaaaaaa
ctgtgcatcccctgttgaggagtccatttctgttccaagggggtatggtt
tgaaatgcagtatAATTCCATAGCAGTAgacaaaaatccgtcaaaaataa
gtggaattccatgggggtaatggatgaaaatctgtaaaaattcggaattc
cagaggggtatgatcctaaaattgcctggaattccaagggggtagttCAC
AAAAGGTTGaagctcctcaacagggggtgcacggtttttttctggaaaag
cccattagcGAGAATCTGCAGTACCGACTGTCGCTTGCTCACCTTGAGTG
TCTCACTTACTTCAGTTATATTCTTATATCAACAAATTATCATCAATTTC
TTTCTGGATTTTCAGCTATCAGCTACCTTGAGTGCCTCACTTACTTAAGT
TATATTCTTATATCAACAAATTATCATCAATTTCTTTCTGGATTTTCAGC
TATCAGCTACTTTGAGTGCCTCACTTACTTAAGTTATATTCTTATATCAA
CAAATTATCATCAATTTCTTTCTGGATTTTCAGCTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033876XLOC_033876Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053713-exon-scaffold_233-1491911889:64460..65249TCONS_00053713-exon-scaffold_233-1491911889:64460..65249Clytia hemisphaericaexon
TCONS_00053713-exon-scaffold_233-1510915933:64460..65249TCONS_00053713-exon-scaffold_233-1510915933:64460..65249Clytia hemisphaericaexon
TCONS_00053713-exon-scaffold_233-1575043694:64460..65249TCONS_00053713-exon-scaffold_233-1575043694:64460..65249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:64460..65249 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.858798	0.732058	3.24996	3.03123	0.337312	0.339584	0.504401	0.693763	0.164498	0.677752	0	0.434783	0.2467	0.38854	0.227114	0.360494	0.394349	0.403281	0.871723	0.78163	0.521008	1.11999	1.29266	0.373058	0.419804	0.496413	5.12526	4.34795	0.581464	0.426249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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