TCONS_00053716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053716
Unique NameTCONS_00053716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053716 ID=TCONS_00053716|Name=TCONS_00053716|organism=Clytia hemisphaerica|type=transcript|length=251bp
TCCTTTTctaatttaccattttgagCTTTCAAGCCGCCCATCTCATTTTC
AAGGGTTTGAAAGTCATTTTCCAATTTGCCATTTTGGGCTTTCAAGCCGC
CCATTTCCTGTTTAAGGTCTTCGAATTCATTTATCAGATCAGCTTCAGCC
ACTTTTTTCTCGAAAGCTTGATTCTGAATTTTGAGTGTTTCGATTTCTTT
TGCCATTTGACTtccattatttttgttttcctgcTGCGCCTTCAATTTAG
C
Run BLAST on NCBI

transcript from alignment at scaffold_233:94279..94529

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053716 ID=TCONS_00053716|Name=TCONS_00053716|organism=Clytia hemisphaerica|type=transcript|length=251bp|location=Sequence derived from alignment at scaffold_233:94279..94529 (Clytia hemisphaerica)
GCTAAATTGAAGGCGCAgcaggaaaacaaaaataatggaAGTCAAATGGC
AAAAGAAATCGAAACACTCAAAATTCAGAATCAAGCTTTCGAGAAAAAAG
TGGCTGAAGCTGATCTGATAAATGAATTCGAAGACCTTAAACAGGAAATG
GGCGGCTTGAAAGCCCAAAATGGCAAATTGGAAAATGACTTTCAAACCCT
TGAAAATGAGATGGGCGGCTTGAAAGctcaaaatggtaaattagAAAAGG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033879XLOC_033879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053716-exon-scaffold_233-1491911889:94279..94529TCONS_00053716-exon-scaffold_233-1491911889:94279..94529Clytia hemisphaericaexon
TCONS_00053716-exon-scaffold_233-1510915933:94279..94529TCONS_00053716-exon-scaffold_233-1510915933:94279..94529Clytia hemisphaericaexon
TCONS_00053716-exon-scaffold_233-1575043694:94279..94529TCONS_00053716-exon-scaffold_233-1575043694:94279..94529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:94279..94529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.47173	0.854409	0	0	1.06304	5.80315	5.94225	1.27179	1.80201	2.68119	0	7.31242	5.73314	8.42422	2.9526	2.49123	2.32251	12.6194	9.3969	9.87802	8.2378	3.46089	3.14645	4.32646	1.76021	3.10416	1.10428	7.53804	2.56002
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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