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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053720 ID=TCONS_00053720|Name=TCONS_00053720|organism=Clytia hemisphaerica|type=transcript|length=881bp
CAATCTTACCTAAGTACCCCTCGAACATTTTTTGCATAATAAAAAGTCAT
TAGATTCGCGACGTGTTGAAAAACTGGTCTTTATAAGCTTCCATTCTCAT
AACAACGTCAACAATATTAGGATAATTTGACAAAAGTGTTCTGATTTGAA
CAGGTTTTTTTGGTCTCCACTCTGTTTGGAGGTCGTTTTTTTTTCCTGGA
ACTTAAAATCATACACTTTACAAATTATATTATTGAAATCTTTATTATCG
AATAGACTACCACGTTTCTTCTATGTAGTACCATGGTGCTTACCATATCC
CGTGATTTTAGGTGCGTTGCTtgttgtgaaatttttaaaattcagtttca
AATAATAGatctttttataaattacgtcacgaacatcacttgcctcgtat
tcaaacaatttccatggtgatcattttccttgagacattaaacgattttt
ttatgaatagaaagtagttgtaataaaacccgctgggagttaatcaccat
ggcaataatttcaaaacgaggcaactgatgttcgtgacgtaatttatgaa
aaggtctatacccCTACGCTAAGTTTTTACATTTATACAATAAGATAATT
CATTCTACGCCATTCCAGGGTCATTGAAATCACAATCAGGTTCAATGACC
TCTTCCTATTggtcaaatattttgaaaatttgaccaaCGGAAGGTCTTTG
CTAGAGCGTAGTTTCCTAATAAGCGCTGCATTCTGAAGGCGGCGCTTTTA
TggaatccaaaatttttaatgcGCCGCATATGTAGAGTGGTACTTGGATG
AAAGCGGtataaagaatattttaaacgtttttttgtaatagttttttaaa
agaaagttttaagaAGTTGAAATTATTTTAT Run BLAST on NCBI transcript from alignment at scaffold_233:213870..214750 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053720 ID=TCONS_00053720|Name=TCONS_00053720|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at scaffold_233:213870..214750 (Clytia hemisphaerica)
ATAAAATAATTTCAACTtcttaaaactttcttttaaaaaactattacaaa
aaaacgtttaaaatattctttataCCGCTTTCATCCAAGTACCACTCTAC
ATATGCGGCgcattaaaaattttggattccATAAAAGCGCCGCCTTCAGA
ATGCAGCGCTTATTAGGAAACTACGCTCTAGCAAAGACCTTCCGttggtc
aaattttcaaaatatttgaccAATAGGAAGAGGTCATTGAACCTGATTGT
GATTTCAATGACCCTGGAATGGCGTAGAATGAATTATCTTATTGTATAAA
TGTAAAAACTTAGCGTAGgggtatagaccttttcataaattacgtcacga
acatcagttgcctcgttttgaaattattgccatggtgattaactcccagc
gggttttattacaactactttctattcataaaaaaatcgtttaatgtctc
aaggaaaatgatcaccatggaaattgtttgaatacgaggcaagtgatgtt
cgtgacgtaatttataaaaagatCTATTATTtgaaactgaattttaaaaa
tttcacaacaAGCAACGCACCTAAAATCACGGGATATGGTAAGCACCATG
GTACTACATAGAAGAAACGTGGTAGTCTATTCGATAATAAAGATTTCAAT
AATATAATTTGTAAAGTGTATGATTTTAAGTTCCAGGAAAAAAAAACGAC
CTCCAAACAGAGTGGAGACCAAAAAAACCTGTTCAAATCAGAACACTTTT
GTCAAATTATCCTAATATTGTTGACGTTGTTATGAGAATGGAAGCTTATA
AAGACCAGTTTTTCAACACGTCGCGAATCTAATGACTTTTTATTATGCAA
AAAATGTTCGAGGGGTACTTAGGTAAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053720-exon-scaffold_233-1491911889:213870..214750 | TCONS_00053720-exon-scaffold_233-1491911889:213870..214750 | Clytia hemisphaerica | exon |
| TCONS_00053720-exon-scaffold_233-1510915933:213870..214750 | TCONS_00053720-exon-scaffold_233-1510915933:213870..214750 | Clytia hemisphaerica | exon |
| TCONS_00053720-exon-scaffold_233-1575043694:213870..214750 | TCONS_00053720-exon-scaffold_233-1575043694:213870..214750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:213870..214750 . |
Blast
The following BLAST results are available for this feature:
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