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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053751 ID=TCONS_00053751|Name=TCONS_00053751|organism=Clytia hemisphaerica|type=transcript|length=1182bp
taccagtttttacaCATAAAATGTTCCAAGATTAAAGATTTATTGGTTGA
AGTGTGATAGTAACAATGATTCTACCAGCagtaaattttcttcttcttca
ttttacGATTTTTGTCAAGATATTCCGAGTTTcctaataaaaatatttac
tcTTTTTCTATTGTATAGAGAAAAgcctaacttaaattttggtatatatT
AAGACTTTAAAATCAGTTCAGTCGATTAATTGAATTATCTTATATAATTG
TGTTAATTCTttattcaattttgaaattctaattttatttaaatgaaTTT
TAGCATTTTAGGTACGTCTAAGTTTTTCTCTATACAATAAAAGAGtaatc
agcaaaaaattttaTCCGTAACAATATCCCACAATATCTTGATAAACCTT
TATTGGCACCCGGTAAAATCCCACACAAGATCGCACTCTaaatttaaaaa
cctaaaatttgttACCAACGTCAGTTATCCAGTAAGTTACTTGAAGCCTT
TGTAAACAAACCTCATTCGCTAACATCCATTTGAGGAACGATCTCCATAC
TTTCGTGAAACTCTGTGAATTTCCGCATTTTCACATTTGGGTGAATGGAT
TGATTAGATTCTTTTATATCCTTTATGATGGCCTGCCGGATTTGTTCCCT
GAGTTGCGATTCGTCAGGATCCTCCCCGACTACTTCCATAACCCTTGGAT
GAATCATCTCTCCTATCTCACGCAGACTATCGAAAGAGATTTCACTCTCA
CATTCAGTGAAACAGAAGGGGAGAGAAGTTTTCTCATAGGTGGAGAGTCC
TTCTACTATATCATCAATGTATGCTTCATCAATCTTTCCACTTTCAATTT
TAGCATAAGGTACATCAGAGATATGTTTATAACCAGTTTTCTCTAACAAG
TAAGTCAATACTTTACGTATTCTCTCTCTTTGGTGCTCATACGCCGGTGC
AAATCTTTCCAAATTAGCATGTTCAATTCCAGAGCAGTTAGCGATCCCTA
GAGTTTTGTGAAGGTCATGCATgagcccggggggggtactacccttgtcg
accgacgggggtgctccgctgagatctgaaaaaatggaccctacgtggga
ctcgaaatttgcgaaaaaagtgaccctgaatgggactgaaattccaaaat
tttctcaaattttctactttttccccaaattt Run BLAST on NCBI protein sequence of TCONS_00053751-protein >TCONS_00053751-protein ID=TCONS_00053751-protein|Name=TCONS_00053751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MHDLHKTLGIANCSGIEHANLERFAPAYEHQRERIRKVLTYLLEKTGYKH
ISDVPYAKIESGKIDEAYIDDIVEGLSTYEKTSLPFCFTECESEISFDSL
REIGEMIHPRVMEVVGEDPDESQLREQIRQAIIKDIKESNQSIHPNVKMR
KFTEFHESMEIVPQMDVSE Run BLAST on NCBI transcript from alignment at scaffold_233:879125..880306 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053751 ID=TCONS_00053751|Name=TCONS_00053751|organism=Clytia hemisphaerica|type=transcript|length=1182bp|location=Sequence derived from alignment at scaffold_233:879125..880306 (Clytia hemisphaerica)
aaatttggggaaaaagtagaaaatttgagaaaattttggaatttcagtcc
cattcagggtcacttttttcgcaaatttcgagtcccacgtagggtccatt
ttttcagatctcagcggagcacccccgtcggtcgacaagggtagtacccc
ccccgggctcATGCATGACCTTCACAAAACTCTAGGGATCGCTAACTGCT
CTGGAATTGAACATGCTAATTTGGAAAGATTTGCACCGGCGTATGAGCAC
CAAAGAGAGAGAATACGTAAAGTATTGACTTACTTGTTAGAGAAAACTGG
TTATAAACATATCTCTGATGTACCTTATGCTAAAATTGAAAGTGGAAAGA
TTGATGAAGCATACATTGATGATATAGTAGAAGGACTCTCCACCTATGAG
AAAACTTCTCTCCCCTTCTGTTTCACTGAATGTGAGAGTGAAATCTCTTT
CGATAGTCTGCGTGAGATAGGAGAGATGATTCATCCAAGGGTTATGGAAG
TAGTCGGGGAGGATCCTGACGAATCGCAACTCAGGGAACAAATCCGGCAG
GCCATCATAAAGGATATAAAAGAATCTAATCAATCCATTCACCCAAATGT
GAAAATGCGGAAATTCACAGAGTTTCACGAAAGTATGGAGATCGTTCCTC
AAATGGATGTTAGCGAATGAGGTTTGTTTACAAAGGCTTCAAGTAACTTA
CTGGATAACTGACGTTGGTaacaaattttaggtttttaaatttAGAGTGC
GATCTTGTGTGGGATTTTACCGGGTGCCAATAAAGGTTTATCAAGATATT
GTGGGATATTGTTACGGAtaaaattttttgctgattaCTCTTTTATTGTA
TAGAGAAAAACTTAGACGTACCTAAAATGCTAAAAttcatttaaataaaa
ttagaatttcaaaattgaataaAGAATTAACACAATTATATAAGATAATT
CAATTAATCGACTGAACTGATTTTAAAGTCTTAatatataccaaaattta
agttaggcTTTTCTCTATACAATAGAAAAAgagtaaatatttttattagg
AAACTCGGAATATCTTGACAAAAATCgtaaaatgaagaagaagaaaattt
actGCTGGTAGAATCATTGTTACTATCACACTTCAACCAATAAATCTTTA
ATCTTGGAACATTTTATGtgtaaaaactggta Coding sequence (CDS) from alignment at scaffold_233:879125..880306 >TCONS_00053751 ID=TCONS_00053751|Name=TCONS_00053751|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_233:879125..880306 (Clytia hemisphaerica)
ATGCATGACCTTCACAAAACTCTAGGGATCGCTAACTGCTCTGGAATTGA
ACATGCTAATTTGGAAAGATTTGCACCGGCGTATGAGCACCAAAGAGAGA
GAATACGTAAAGTATTGACTTACTTGTTAGAGAAAACTGGTTATAAACAT
ATCTCTGATGTACCTTATGCTAAAATTGAAAGTGGAAAGATTGATGAAGC
ATACATTGATGATATAGTAGAAGGACTCTCCACCTATGAGAAAACTTCTC
TCCCCTTCTGTTTCACTGAATGTGAGAGTGAAATCTCTTTCGATAGTCTG
CGTGAGATAGGAGAGATGATTCATCCAAGGGTTATGGAAGTAGTCGGGGA
GGATCCTGACGAATCGCAACTCAGGGAACAAATCCGGCAGGCCATCATAA
AGGATATAAAAGAATCTAATCAATCCATTCACCCAAATGTGAAAATGCGG
AAATTCACAGAGTTTCACGAAAGTATGGAGATCGTTCCTCAAATGGATGT
TAGCGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053751-exon-scaffold_233-1491911889:879125..880306 | TCONS_00053751-exon-scaffold_233-1491911889:879125..880306 | Clytia hemisphaerica | exon |
| TCONS_00053751-exon-scaffold_233-1510915933:879125..880306 | TCONS_00053751-exon-scaffold_233-1510915933:879125..880306 | Clytia hemisphaerica | exon |
| TCONS_00053751-exon-scaffold_233-1575043694:879125..880306 | TCONS_00053751-exon-scaffold_233-1575043694:879125..880306 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:879125..880306 . |
Blast
The following BLAST results are available for this feature:
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