TCONS_00053758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053758
Unique NameTCONS_00053758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053758 ID=TCONS_00053758|Name=TCONS_00053758|organism=Clytia hemisphaerica|type=transcript|length=367bp
GATCGCCGATGCCTACGGTTGGCTAACAGTTAAGGAATTTAAAGCTAATG
AATTGACATCTGGGGAGGCAGAGGAGAAAAGACTAAAGAGAGCAATAAAA
AACGCAGAGATTGTCAAAGgccgtttttataaaaaacaaaaacttccCGA
AGATTCAGACTATAATAAAGTAATAAGTTGGACGAAGTTGTATGCTAACT
CCTGTAAACGTGTCGGACATTACGTATCGCACTGTCCCTTTTCGAATATA
GTATTGCCTTCGTCTCTCGTATATTCAACAAAATCACATTCATCGTcatc
aacaaataaaaattcGTCAAGTTCTTCAAAAAGCTCGAAAGACGGTAAAA
GTACCTCTGGATAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00053758-protein

>TCONS_00053758-protein ID=TCONS_00053758-protein|Name=TCONS_00053758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
IADAYGWLTVKEFKANELTSGEAEEKRLKRAIKNAEIVKGRFYKKQKLPE
DSDYNKVISWTKLYANSCKRVGHYVSHCPFSNIVLPSSLVYSTKSHSSSS
TNKNSSSSSKSSKDGKSTSG
Run BLAST on NCBI

transcript from alignment at scaffold_233:964289..964655

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053758 ID=TCONS_00053758|Name=TCONS_00053758|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at scaffold_233:964289..964655 (Clytia hemisphaerica)
TTTTTATCCAGAGGTACTTTTACCGTCTTTCGAGCTTTTTGAAGAACTTG
ACgaatttttatttgttgatgACGATGAATGTGATTTTGTTGAATATACG
AGAGACGAAGGCAATACTATATTCGAAAAGGGACAGTGCGATACGTAATG
TCCGACACGTTTACAGGAGTTAGCATACAACTTCGTCCAACTTATTACTT
TATTATAGTCTGAATCTTCGggaagtttttgttttttataaaaacggcCT
TTGACAATCTCTGCGTTTTTTATTGCTCTCTTTAGTCTTTTCTCCTCTGC
CTCCCCAGATGTCAATTCATTAGCTTTAAATTCCTTAACTGTTAGCCAAC
CGTAGGCATCGGCGATC

Coding sequence (CDS) from alignment at scaffold_233:964289..964655

>TCONS_00053758 ID=TCONS_00053758|Name=TCONS_00053758|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_233:964289..964655 (Clytia hemisphaerica)
TTATCCAGAGGTACTTTTACCGTCTTTCGAGCTTTTTGAAGAACTTGACg
aatttttatttgttgatgACGATGAATGTGATTTTGTTGAATATACGAGA
GACGAAGGCAATACTATATTCGAAAAGGGACAGTGCGATACGTAATGTCC
GACACGTTTACAGGAGTTAGCATACAACTTCGTCCAACTTATTACTTTAT
TATAGTCTGAATCTTCGggaagtttttgttttttataaaaacggcCTTTG
ACAATCTCTGCGTTTTTTATTGCTCTCTTTAGTCTTTTCTCCTCTGCCTC
CCCAGATGTCAATTCATTAGCTTTAAATTCCTTAACTGTTAGCCAACCGT
AGGCATCGGCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033920XLOC_033920Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053758-proteinTCONS_00053758-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053758-exon-scaffold_233-1491911889:964289..964655TCONS_00053758-exon-scaffold_233-1491911889:964289..964655Clytia hemisphaericaexon
TCONS_00053758-exon-scaffold_233-1510915933:964289..964655TCONS_00053758-exon-scaffold_233-1510915933:964289..964655Clytia hemisphaericaexon
TCONS_00053758-exon-scaffold_233-1575043694:964289..964655TCONS_00053758-exon-scaffold_233-1575043694:964289..964655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:964289..964655 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16695	0.778044	0.463831	0.439201	0	0	0.290289	0.441708	0	0	0	0.537798	1.22271	0	1.38742	1.02114	0.215557	0	0	0.333597	0.277691	0.317682	0	0.402165	0.598478	0.740225	0.387233	0	0.508283	0.378888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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