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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053773 ID=TCONS_00053773|Name=TCONS_00053773|organism=Clytia hemisphaerica|type=transcript|length=1578bp
ATTGTATCTTAGAGAGCGTCATGATCCTTCATTTTTGCAACATAGGATGT
TGCGTACTGCAATAGCATATCCTTTCCGCCAGTGCCCTGGACGTCCATAT
GGCACTCCAATTTTGCAACGATCGTGTCTATATAGGCACGGCGGAAGGTT
TCCCTATCTTCATTTTGATGCTTAAACtttatttcatctttttcaaactt
aattTCTTCCTCTCTCACCCCGATCGACTGGCTAGACTAGGCTTGCTGCC
ATTTTGGTACTTCAATACGTACATCAGTGGAAGCAATTCTCTTCGGATCT
AAATTTTTCATCGATTTAAGCCATAGCAACATGTGTGCACATGAGGCGTA
CGTCGATATTGAAACTCAAACCTATAGAAAGTCACAGTGACATTCCCATT
TTTAGGCGACCTTTTGTCCGCAAACACATGAGTACTCCACCTATTGCTGT
TGCACCCCGAAATCAATCCTCGAGCAATATTTTCTAGAGTGTGTAATATG
TGCACAGTCAAATGGTAAGGCAACGACTTGTGATCTATCCCGGGATACTT
TTGTCCTTCTGCAAACCATCAGGTTTTGGAAAAGTCCACTCCGACGGCGA
TATTGTCAAAAATATACTAGGATATCCGTATTGCCTTACCGCATCTTTCA
GATAGAGATGTTGCCAACGCCAATAAGAGGCTGTAAATGTTTTGCCCTCT
AGCGCTCTTAGTGGAGAACACCCAAATTTTTTCCCGCTTTCAATGGCACC
CGTCACCGACTTAAAGACATATCGGTCGTACTGGAATTGAAGTAAAGAGT
AGTCCAAACCATAGTCTACAACACCCGACATGGCTTTATAATGGAATGTT
CTTTAGTTTCTACATAGAATATGCGTAATGCATCCTTAATCtctttcgaa
aacttttgatcAAAATCATCTGCAGGTCAAAATCGGGGAAATAATAGTAA
GAGTGATGGTTGATGATGTTTTTGGGGTTAGTTTGGGCTGACGTAACCCA
TTTTTTTTGATAATGCGTGTTTCCTGTCATAAACTTTTGTTACTTTTGCT
TGCGTTCTTAGATCGTTTGTGTGTTCAAAGTGGTATTTCTTTTAGTAAAG
TTCTTAAGCAGTTGTTTTGGCacacttcaattttgttttgtagTGATAAA
TTTAATAAAGCTGGGCTTCCATACTCTAGGAGGCTTCTGCTCATGGACAG
ATAGATTTTGTGTTTCGTAGAGATGGTGATgtttttttcgagtttttttA
GTATGCGTGAGATGTTGCGCCTTCCTTGAGCTTTGTTGGTAGATTTTTCT
ATGTGTGAGTTAAATGTTAAGTGTTTGTCAAAAGTGAGTCCTAGAAAATA
CATTTCTTTTACTTGTTCTATGTTTTGGTTTTTGGACTTACCCCGGttgg
gtggaggtcctataaattgaccagtgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcgttcgttcgttcgttcgttcgtctgttaccaactt
ttctcaggattgaatcataggaatcttttgatttttggtacaaaggtgca
aaatggtggtggccgaaatgtgacggag Run BLAST on NCBI transcript from alignment at scaffold_233:1164430..1166007 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053773 ID=TCONS_00053773|Name=TCONS_00053773|organism=Clytia hemisphaerica|type=transcript|length=1578bp|location=Sequence derived from alignment at scaffold_233:1164430..1166007 (Clytia hemisphaerica)
ctccgtcacatttcggccaccaccattttgcacctttgtaccaaaaatca
aaagattcctatgattcaatcctgagaaaagttggtaacagacgaacgaa
cgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacg
aacactggtcaatttataggacctccacccaaCCGGGGTAAGTCCAAAAA
CCAAAACATAGAACAAGTAAAAGAAATGTATTTTCTAGGACTCACTTTTG
ACAAACACTTAACATTTAACTCACACATAGAAAAATCTACCAACAAAGCT
CAAGGAAGGCGCAACATCTCACGCATACTaaaaaaactcgaaaaaaacAT
CACCATCTCTACGAAACACAAAATCTATCTGTCCATGAGCAGAAGCCTCC
TAGAGTATGGAAGCCCAGCTTTATTAAATTTATCActacaaaacaaaatt
gaagtgtGCCAAAACAACTGCTTAAGAACTTTACTAAAAGAAATACCACT
TTGAACACACAAACGATCTAAGAACGCAAGCAAAAGTAACAAAAGTTTAT
GACAGGAAACACGCATTATCAAAAAAAATGGGTTACGTCAGCCCAAACTA
ACCCCAAAAACATCATCAACCATCACTCTTACTATTATTTCCCCGATTTT
GACCTGCAGATGATTTTgatcaaaagttttcgaaagaGATTAAGGATGCA
TTACGCATATTCTATGTAGAAACTAAAGAACATTCCATTATAAAGCCATG
TCGGGTGTTGTAGACTATGGTTTGGACTACTCTTTACTTCAATTCCAGTA
CGACCGATATGTCTTTAAGTCGGTGACGGGTGCCATTGAAAGCGGGAAAA
AATTTGGGTGTTCTCCACTAAGAGCGCTAGAGGGCAAAACATTTACAGCC
TCTTATTGGCGTTGGCAACATCTCTATCTGAAAGATGCGGTAAGGCAATA
CGGATATCCTAGTATATTTTTGACAATATCGCCGTCGGAGTGGACTTTTC
CAAAACCTGATGGTTTGCAGAAGGACAAAAGTATCCCGGGATAGATCACA
AGTCGTTGCCTTACCATTTGACTGTGCACATATTACACACTCTAGAAAAT
ATTGCTCGAGGATTGATTTCGGGGTGCAACAGCAATAGGTGGAGTACTCA
TGTGTTTGCGGACAAAAGGTCGCCTAAAAATGGGAATGTCACTGTGACTT
TCTATAGGTTTGAGTTTCAATATCGACGTACGCCTCATGTGCACACATGT
TGCTATGGCTTAAATCGATGAAAAATTTAGATCCGAAGAGAATTGCTTCC
ACTGATGTACGTATTGAAGTACCAAAATGGCAGCAAGCCTAGTCTAGCCA
GTCGATCGGGGTGAGAGAGGAAGAaattaagtttgaaaaagatgaaataa
aGTTTAAGCATCAAAATGAAGATAGGGAAACCTTCCGCCGTGCCTATATA
GACACGATCGTTGCAAAATTGGAGTGCCATATGGACGTCCAGGGCACTGG
CGGAAAGGATATGCTATTGCAGTACGCAACATCCTATGTTGCAAAAATGA
AGGATCATGACGCTCTCTAAGATACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053773-exon-scaffold_233-1491911889:1164430..1166007 | TCONS_00053773-exon-scaffold_233-1491911889:1164430..1166007 | Clytia hemisphaerica | exon |
| TCONS_00053773-exon-scaffold_233-1510915933:1164430..1166007 | TCONS_00053773-exon-scaffold_233-1510915933:1164430..1166007 | Clytia hemisphaerica | exon |
| TCONS_00053773-exon-scaffold_233-1575043694:1164430..1166007 | TCONS_00053773-exon-scaffold_233-1575043694:1164430..1166007 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1164430..1166007 . |
Blast
The following BLAST results are available for this feature:
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