|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053778 ID=TCONS_00053778|Name=TCONS_00053778|organism=Clytia hemisphaerica|type=transcript|length=2136bp
TTAGCGAACAAAGTGAACAAATTGAAATTGTTCTCCAGTCGTCGCAAACC
ATGATTGCGCCTCCTTAATCTTTGATAACATTATTACTTTTAAATACAAC
TCAAAATATTACTCATGAGATATTAAGATACTGTATATGCAAAAAAACAA
CTTTACTTTTAAATTCCATATGATACAGACATTGAAATGAAAGACTCATT
TCTGAGCAGAATCAGTCCAAAAAAGAGCTTTGTTTGaaggaaatcaaaat
tttctcttgtCGCTTTCAACAAATTTGCGGTAATCTTTTTCCCTTTTTGC
TATACTTGAAGATAAACCAATTTACTTTTCATTACTACAAATTGTACAAA
GCTGCACTATAATACAGTCACAAAAATGTACTAATTGATAAAAGTCTTAG
TTCGTTCTTATCAAACAAACACACGCTGAGAATTGATCCACAAAAGATTA
GCCTTTTGATGAGCAACGTTTGACATCACAAATTATACCAGAACTTTGca
cgaaaatttgatatttcgaTACAAGTTCATAAAACGAATCCCAGTTATTC
ATCAACTTTTTGTTTAAGATGtctataatattgaatttcatgAACGTTTG
TACAAATACGCTTTGTAATTTGATCGACTTGATtagatttatgaattttc
tgACCTTTTTGTCAGTTCCATGAGTATCATATGTTTCTTTATTTGAATTA
GGATGGAAGTTGGCAACCTTCACGTGTTCCATCCTGCCAGTACTATCGTC
TGATCACTATTGCAATCGTCAGGGGAAACCAATGCCAGTACCTTAGAAGT
CGGCATAAACATATGTCAATCCTACACGAGCCAAATTCAACTAATCAACC
GCATCCCTCTAAAACTGTATGAGCAACTAATTTACAACAGGATTTAACCA
ATTACAGAATCTTTCCTTCCAAATGAATAGGCTGGCTTTCATCCGCAACG
ATCAAGCCTCAATCAGGTTACACTGCTTACTGGGGATATCGAACATTTTT
TCAGGCAGAAACTTAAGGCTGGTATTGTGTTTGTCGATCTTTCTGTAGCA
TATGATACAGTTTGGCATCGTGGTCTGACACTCAAGTTGCTTAAAATCAT
CCGAAGCCACCACATGGTCCATGTCATTATGCCATTGATATCACAGCGCC
GCTTCTAGTTGCACATTGTTGGCAAGAAGTCCCATTGTCGTACCCTGATC
AACGGTGTTCCACAAGGCTCCGTCCTACTCCACTGTACACACACGACCTG
CAACCCACAACCAGCAAGAAGTACATATACGCAGATGTTCTTGACATTCT
TGACATAAAATCTACCCACAAGGATTTCCCTGAGATAGAAATGTTCTCTT
CCAAGATATTGATTCCTTGAGGACTATTTTACTAACTGGAGGCTTAATTT
AAACACAGGAAAAAACTGTCTCGAGTATGTTTTATCCATCGATCGGAAAG
CTACTTACGAACTCAACGTTACGACCAACGGCGAGAAACTACGCTTTGAG
ACGAATTCTGTCTACCTTGGCGTGACGCTAGATCGTACCCTCTCCTTCAA
CCAGCACCTTACAAACGATTTTTCGAAGGTTACGAAATACGCTGCAATCT
TCTTCGAAATCTTGCTGATAGCCGCTGGGGTGCAGACTTTACCACCCTCC
GCACAACTGCACTAGCTCTATGCTATTCAACGGCAGAATTTTGCTTGCCA
ATCTGGAGTTTCAACAGGTCATTGTAAAAAGGTTGACCTTTCTCTAAACA
GCGGATCCATCAAACCCACACCTGCTTATATCCTTCCGGTTCTTTGTGGC
TTTGATGTATTTCGTCCTTgctaggactcgtcagcactgcatactgcata
TATTCTTTCCTATTTTTTACGCCGACTGTCAGCAAAAAAACAGTTTATGG
CGTTTATCAAGAGAAACTTTGAAAACGAATCTCAGAAGAAAGACCTTTTT
ACAAGTAAAGATCATCACAAATATTATTGATAACTTTGATCGGTGTcatc
tcattttcaaaaatctgaaactttttggtcaaaacgaggaaaactaccaa
aattttaagaattttgggaTCCTTTGGAGGGCTTTTTCTTTTGAGGGacg
aaaatcgtgattttttaTGAGGTTTTCCCTTTTTTC Run BLAST on NCBI protein sequence of TCONS_00053778-protein >TCONS_00053778-protein ID=TCONS_00053778-protein|Name=TCONS_00053778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MYFVLARTRQHCILHIFFPIFYADCQQKNSLWRLSRETLKTNLRRKTFLQ
VKIITNIIDNFDRCHLIFKNLKLFGQNEENYQNFKNFGILWRAFSFEGRK
S Run BLAST on NCBI transcript from alignment at scaffold_233:1214741..1216876 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053778 ID=TCONS_00053778|Name=TCONS_00053778|organism=Clytia hemisphaerica|type=transcript|length=2136bp|location=Sequence derived from alignment at scaffold_233:1214741..1216876 (Clytia hemisphaerica)
GAAAAAAGGGAAAACCTCAtaaaaaatcacgattttcgtCCCTCAAAAGA
AAAAGCCCTCCAAAGGAtcccaaaattcttaaaattttggtagttttcct
cgttttgaccaaaaagtttcagatttttgaaaatgagatgACACCGATCA
AAGTTATCAATAATATTTGTGATGATCTTTACTTGTAAAAAGGTCTTTCT
TCTGAGATTCGTTTTCAAAGTTTCTCTTGATAAACGCCATAAACTGTTTT
TTTGCTGACAGTCGGCGTAAAAAATAGGAAAGAATAtatgcagtatgcag
tgctgacgagtcctagcAAGGACGAAATACATCAAAGCCACAAAGAACCG
GAAGGATATAAGCAGGTGTGGGTTTGATGGATCCGCTGTTTAGAGAAAGG
TCAACCTTTTTACAATGACCTGTTGAAACTCCAGATTGGCAAGCAAAATT
CTGCCGTTGAATAGCATAGAGCTAGTGCAGTTGTGCGGAGGGTGGTAAAG
TCTGCACCCCAGCGGCTATCAGCAAGATTTCGAAGAAGATTGCAGCGTAT
TTCGTAACCTTCGAAAAATCGTTTGTAAGGTGCTGGTTGAAGGAGAGGGT
ACGATCTAGCGTCACGCCAAGGTAGACAGAATTCGTCTCAAAGCGTAGTT
TCTCGCCGTTGGTCGTAACGTTGAGTTCGTAAGTAGCTTTCCGATCGATG
GATAAAACATACTCGAGACAGTTTTTTCCTGTGTTTAAATTAAGCCTCCA
GTTAGTAAAATAGTCCTCAAGGAATCAATATCTTGGAAGAGAACATTTCT
ATCTCAGGGAAATCCTTGTGGGTAGATTTTATGTCAAGAATGTCAAGAAC
ATCTGCGTATATGTACTTCTTGCTGGTTGTGGGTTGCAGGTCGTGTGTGT
ACAGTGGAGTAGGACGGAGCCTTGTGGAACACCGTTGATCAGGGTACGAC
AATGGGACTTCTTGCCAACAATGTGCAACTAGAAGCGGCGCTGTGATATC
AATGGCATAATGACATGGACCATGTGGTGGCTTCGGATGATTTTAAGCAA
CTTGAGTGTCAGACCACGATGCCAAACTGTATCATATGCTACAGAAAGAT
CGACAAACACAATACCAGCCTTAAGTTTCTGCCTGAAAAAATGTTCGATA
TCCCCAGTAAGCAGTGTAACCTGATTGAGGCTTGATCGTTGCGGATGAAA
GCCAGCCTATTCATTTGGAAGGAAAGATTCTGTAATTGGTTAAATCCTGT
TGTAAATTAGTTGCTCATACAGTTTTAGAGGGATGCGGTTGATTAGTTGA
ATTTGGCTCGTGTAGGATTGACATATGTTTATGCCGACTTCTAAGGTACT
GGCATTGGTTTCCCCTGACGATTGCAATAGTGATCAGACGATAGTACTGG
CAGGATGGAACACGTGAAGGTTGCCAACTTCCATCCTAATTCAAATAAAG
AAACATATGATACTCATGGAACTGACAAAAAGGTcagaaaattcataaat
ctaATCAAGTCGATCAAATTACAAAGCGTATTTGTACAAACGTTcatgaa
attcaatattatagaCATCTTAAACAAAAAGTTGATGAATAACTGGGATT
CGTTTTATGAACTTGTAtcgaaatatcaaattttcgtgCAAAGTTCTGGT
ATAATTTGTGATGTCAAACGTTGCTCATCAAAAGGCTAATCTTTTGTGGA
TCAATTCTCAGCGTGTGTTTGTTTGATAAGAACGAACTAAGACTTTTATC
AATTAGTACATTTTTGTGACTGTATTATAGTGCAGCTTTGTACAATTTGT
AGTAATGAAAAGTAAATTGGTTTATCTTCAAGTATAGCAAAAAGGGAAAA
AGATTACCGCAAATTTGTTGAAAGCGacaagagaaaattttgatttcctt
CAAACAAAGCTCTTTTTTGGACTGATTCTGCTCAGAAATGAGTCTTTCAT
TTCAATGTCTGTATCATATGGAATTTAAAAGTAAAGTTGTTTTTTTGCAT
ATACAGTATCTTAATATCTCATGAGTAATATTTTGAGTTGTATTTAAAAG
TAATAATGTTATCAAAGATTAAGGAGGCGCAATCATGGTTTGCGACGACT
GGAGAACAATTTCAATTTGTTCACTTTGTTCGCTAA Coding sequence (CDS) from alignment at scaffold_233:1214741..1216876 >TCONS_00053778 ID=TCONS_00053778|Name=TCONS_00053778|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_233:1214741..1216876 (Clytia hemisphaerica)
tcacgattttcgtCCCTCAAAAGAAAAAGCCCTCCAAAGGAtcccaaaat
tcttaaaattttggtagttttcctcgttttgaccaaaaagtttcagattt
ttgaaaatgagatgACACCGATCAAAGTTATCAATAATATTTGTGATGAT
CTTTACTTGTAAAAAGGTCTTTCTTCTGAGATTCGTTTTCAAAGTTTCTC
TTGATAAACGCCATAAACTGTTTTTTTGCTGACAGTCGGCGTAAAAAATA
GGAAAGAATAtatgcagtatgcagtgctgacgagtcctagcAAGGACGAA
ATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053778-exon-scaffold_233-1491911889:1214741..1216876 | TCONS_00053778-exon-scaffold_233-1491911889:1214741..1216876 | Clytia hemisphaerica | exon |
| TCONS_00053778-exon-scaffold_233-1510915933:1214741..1216876 | TCONS_00053778-exon-scaffold_233-1510915933:1214741..1216876 | Clytia hemisphaerica | exon |
| TCONS_00053778-exon-scaffold_233-1575043694:1214741..1216876 | TCONS_00053778-exon-scaffold_233-1575043694:1214741..1216876 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1214741..1216876 . |
Blast
The following BLAST results are available for this feature:
|
