TCONS_00053779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053779
Unique NameTCONS_00053779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053779 ID=TCONS_00053779|Name=TCONS_00053779|organism=Clytia hemisphaerica|type=transcript|length=342bp
gttatcaaatattattttaacaatattcattttattattattcaaaattg
atgaattgtatcttatttattcaaattataCTGTTTGTTCCAACGAACAA
GAGTTCTTCTCTTTATATAATGTGATTTTTCTTAAGGCCGTTACCTTCTT
CATTTGCTATACCCACTTTTCTATAATTCGTAAATGAAGGCTAGTCCAGT
TCCTTCTAAATGTTTCTTTTCCCATTCTTCAAATCTTTGAATAGTTTCTT
GAGTGAAAGCAGTCTTCCAACCACCTGTTTTGCCTTTGTTGATGAATGTT
CCTTTTTCTTCTGTATTGTTTTGTGAACGTTTAATCATCTGA
Run BLAST on NCBI

transcript from alignment at scaffold_233:1221835..1222176

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053779 ID=TCONS_00053779|Name=TCONS_00053779|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at scaffold_233:1221835..1222176 (Clytia hemisphaerica)
TCAGATGATTAAACGTTCACAAAACAATACAGAAGAAAAAGGAACATTCA TCAACAAAGGCAAAACAGGTGGTTGGAAGACTGCTTTCACTCAAGAAACT ATTCAAAGATTTGAAGAATGGGAAAAGAAACATTTAGAAGGAACTGGACT AGCCTTCATTTACGAATTATAGAAAAGTGGGTATAGCAAATGAAGAAGGT AACGGCCTTAAGAAAAATCACATTATATAAAGAGAAGAACTCTTGTTCGT TGGAACAAACAGtataatttgaataaataagatacaattcatcaattttg aataataataaaatgaatattgttaaaataatatttgataac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033941XLOC_033941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053779-exon-scaffold_233-1491911889:1221835..1222176TCONS_00053779-exon-scaffold_233-1491911889:1221835..1222176Clytia hemisphaericaexon
TCONS_00053779-exon-scaffold_233-1510915933:1221835..1222176TCONS_00053779-exon-scaffold_233-1510915933:1221835..1222176Clytia hemisphaericaexon
TCONS_00053779-exon-scaffold_233-1575043694:1221835..1222176TCONS_00053779-exon-scaffold_233-1575043694:1221835..1222176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1221835..1222176 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.906079 0.783027 0 0 0 0 0 0 0 0.177653 9.6092 6.09948 4.52376 3.19235 4.85311 7.11139 9.23791 3.01439 12.1444 16.3981 29.7688 28.2969 26.6348 32.3474 263.985 367.159 42.1398 27.7404
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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