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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053780 ID=TCONS_00053780|Name=TCONS_00053780|organism=Clytia hemisphaerica|type=transcript|length=2481bp
ATCTTAAGGACAATTTATAATAAATTTATTAGGACAATGGGAtttaaaat
gccaaaaaatataCAGAGACGCGAAACATTCGTATAGCATAACTTTGCCA
CATTATAAATTTCACTTGAAAAAAGTTATGAGGTCTCAAATTTACCGCGA
AGAAAATACTCGGGTaatgatttttctgaaatctaaTGCTTGGTTACCAA
CTCAAAATGTGTAGTTTAAAAAATTAGAACTGAAGTTCATCTAATTATTA
AACGTTCTTTAACAAACTATATAgaaacataaggtttcgatggccaaaat
atcaagaacaaattGTAAAGACATTTATTTTCAGGTTTTGTGGCTTCTAA
AATACTCGATTTCTTTGGAAATTTAATTTAGGCTTTAAACTAAAAGAGTT
Ataaacatccaaaggcttcaagaattttgaatgttcttataaaaaaaacg
tgtaattttttGTCTAAAGTGAAAGCGCTTTCAACACTCTTTTCACTAAG
AAAATGATGTAGCAACGATAATAGTACCAAGTCTGTATCACTGTCTCAAA
AAACTTTGGGCCATCGTAGCGAACGTTGTAATCAAAAGTTCCCCGGAATT
CCGGTAAATTCATTTCTTTGACATCATTATTGTGTTTAGTGATTATTCTA
GCGGTTCCCCTTTTAAGATTTGCTAGCAGATTTTCTATGTAAGCCGTGAG
TCTTTCCATTTCATTTTCGATAAATGACATTTGGCCGAAAGCGATATGTT
TCCATTCACCATCCTGTAACCTAGCAACCGAACACATAGCTCCTTGTCTT
AGATCTCCGGACATAGTATTCCCAATATCTCCTTGTGAGTAACCAAAAAA
GTTTTGATCATTCAAAAACAAATCTAATGGAGAGGTATTACAAATGTTAG
CTTCTTCAAACCCATTAAACTCTGTTTCAAATAACTCTTCGACTTCATTT
ATTAAAAGCGCAAATGTTGGAAGAAATAGCCTTTGCTGAAATTGTGGGAT
CTTCTCTATCCATGTTTTTGAAGTAGGTTTATGAGGTAATGAGAAACTGA
GATAGCTTTGTCGATCACGGAAGGGTAGTGCTCCTGTAGCTGTATCTTGA
AACAATGATATCGCTTTTATTCCTATCCTATATTTTGCTTCTTTAGTCAG
ACAGCTGATGATCTCTCCTGACAGTATGGTGAAAATACTGGTCAATAAAT
ATATACATCTTCTTTGAAACTCGTACCATACAAACATATAAATCCATCCG
AAATCTGCCTGAGCATGCAAATCCGTGTAATGGGTGTTCAAAGCTGGAAC
TTCGTTCATGTTAAGGTCACTAGCATCGACAAGAAAATCTAAGTATTTAG
ATTTACCTTCACCGTCTTTAGTAATCAAACAAGATGATCGCCAGAAAAAA
CGAAGGCATCTCTAATGCGTCAAATTTGCTCGACAGATAAGCAAGTATAT
TAAAGATACATTTAGATAAATCTTCGTTGCATTTCTCCGAGTCGTAAACA
TGGTATAATATTGCTGTTTTCAATTTATAAGATTCAATTAAATGTCCACA
TATCAACTTCTTGATGATTCGATAGCATTTTCGGTGTGCTTCATTCAGGT
TTTTCATCAAGTGTAATTCTTCTTGAGCGAAAGAGATATGGAAACATTGA
TGACACTCGGGGGAACATTTTTTAGGTACCAAAAAGCAGCCATGATTTTG
TAGAAGTGGTTTAAATTCAGATGGAAAATTATCGTCATTAACAATTGTAG
AAATACACTCTTCGGGATAAGCTATTGATGGGAGGATATCAACTGTTAGC
GAAAACTCATGAAATAAGCCTTTCCATTCCGCTTTTAGGCAAGGGATTCC
AAAGCCAAGTGCATCCACAGATTTCAATTGCAAACAACCAGTTCGTCGTT
TGATCAGTTTTTCATTGTctgataaacattttaaagAGTTTCTTATCATA
CCGGAAAAAGTTTCTGATAGTTCTTTTGAGTTTTcaataccattttcaaa
atcaattttcacaCGACCTGTTCTACATCCAACTTCATCAGAAATCTTGA
TTTGTCCAGCGTTTATTTCAACGTTGAAGTCAAATTCATCAGGTAAAGTC
AACTTTGTCTTCTCATAGAAACTTCCCACGGGTAGAATTTTCTTGACAGA
AAAAAGATCTCCGTACGTCAAATgctcaaatttattttctaacaAAGTGT
ATTTGGGGGTGTGCTTTTTTAAGGTTTCATCGTATGATAATGTCACCCTT
TGGTAACCTTCGACAGGAAGAGTTTTTccaatttcaagaattttagtAAG
AGCTTCAAACACTGCACTTTCCACATCACTAACTGTCTCTTCTGATACTT
TATAGTTGCAAAAGTCATCatgaaatttgttaaaaaagttattcaaatCC
ATTCTCTATCCAaccaaattagaaaaaaaaacacaaataaaaTCTACATT
AGAATCAACCATTTCAAGCTCCTCTTTCTCG Run BLAST on NCBI protein sequence of TCONS_00053780-protein >TCONS_00053780-protein ID=TCONS_00053780-protein|Name=TCONS_00053780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MDLNNFFNKFHDDFCNYKVSEETVSDVESAVFEALTKILEIGKTLPVEGY
QRVTLSYDETLKKHTPKYTLLENKFEHLTYGDLFSVKKILPVGSFYEKTK
LTLPDEFDFNVEINAGQIKISDEVGCRTGRVKIDFENGIENSKELSETFS
GMIRNSLKCLSDNEKLIKRRTGCLQLKSVDALGFGIPCLKAEWKGLFHEF
SLTVDILPSIAYPEECISTIVNDDNFPSEFKPLLQNHGCFLVPKKCSPEC
HQCFHISFAQEELHLMKNLNEAHRKCYRIIKKLICGHLIESYKLKTAILY
HVYDSEKCNEDLSKCIFNILAYLSSKFDALEMPSFFLAIILFDY Run BLAST on NCBI transcript from alignment at scaffold_233:1297922..1300402 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053780 ID=TCONS_00053780|Name=TCONS_00053780|organism=Clytia hemisphaerica|type=transcript|length=2481bp|location=Sequence derived from alignment at scaffold_233:1297922..1300402 (Clytia hemisphaerica)
CGAGAAAGAGGAGCTTGAAATGGTTGATTCTAATGTAGAttttatttgtg
tttttttttctaatttggtTGGATAGAGAATGGatttgaataactttttt
aacaaatttcatGATGACTTTTGCAACTATAAAGTATCAGAAGAGACAGT
TAGTGATGTGGAAAGTGCAGTGTTTGAAGCTCTTactaaaattcttgaaa
ttggAAAAACTCTTCCTGTCGAAGGTTACCAAAGGGTGACATTATCATAC
GATGAAACCTTAAAAAAGCACACCCCCAAATACACTTtgttagaaaataa
atttgagcATTTGACGTACGGAGATCTTTTTTCTGTCAAGAAAATTCTAC
CCGTGGGAAGTTTCTATGAGAAGACAAAGTTGACTTTACCTGATGAATTT
GACTTCAACGTTGAAATAAACGCTGGACAAATCAAGATTTCTGATGAAGT
TGGATGTAGAACAGGTCGtgtgaaaattgattttgaaaatggtattgAAA
ACTCAAAAGAACTATCAGAAACTTTTTCCGGTATGATAAGAAACTcttta
aaatgtttatcagACAATGAAAAACTGATCAAACGACGAACTGGTTGTTT
GCAATTGAAATCTGTGGATGCACTTGGCTTTGGAATCCCTTGCCTAAAAG
CGGAATGGAAAGGCTTATTTCATGAGTTTTCGCTAACAGTTGATATCCTC
CCATCAATAGCTTATCCCGAAGAGTGTATTTCTACAATTGTTAATGACGA
TAATTTTCCATCTGAATTTAAACCACTTCTACAAAATCATGGCTGCTTTT
TGGTACCTAAAAAATGTTCCCCCGAGTGTCATCAATGTTTCCATATCTCT
TTCGCTCAAGAAGAATTACACTTGATGAAAAACCTGAATGAAGCACACCG
AAAATGCTATCGAATCATCAAGAAGTTGATATGTGGACATTTAATTGAAT
CTTATAAATTGAAAACAGCAATATTATACCATGTTTACGACTCGGAGAAA
TGCAACGAAGATTTATCTAAATGTATCTTTAATATACTTGCTTATCTGTC
GAGCAAATTTGACGCATTAGAGATGCCTTCGTTTTTTCTGGCGATCATCT
TGTTTGATTACTAAAGACGGTGAAGGTAAATCTAAATACTTAGATTTTCT
TGTCGATGCTAGTGACCTTAACATGAACGAAGTTCCAGCTTTGAACACCC
ATTACACGGATTTGCATGCTCAGGCAGATTTCGGATGGATTTATATGTTT
GTATGGTACGAGTTTCAAAGAAGATGTATATATTTATTGACCAGTATTTT
CACCATACTGTCAGGAGAGATCATCAGCTGTCTGACTAAAGAAGCAAAAT
ATAGGATAGGAATAAAAGCGATATCATTGTTTCAAGATACAGCTACAGGA
GCACTACCCTTCCGTGATCGACAAAGCTATCTCAGTTTCTCATTACCTCA
TAAACCTACTTCAAAAACATGGATAGAGAAGATCCCACAATTTCAGCAAA
GGCTATTTCTTCCAACATTTGCGCTTTTAATAAATGAAGTCGAAGAGTTA
TTTGAAACAGAGTTTAATGGGTTTGAAGAAGCTAACATTTGTAATACCTC
TCCATTAGATTTGTTTTTGAATGATCAAAACTTTTTTGGTTACTCACAAG
GAGATATTGGGAATACTATGTCCGGAGATCTAAGACAAGGAGCTATGTGT
TCGGTTGCTAGGTTACAGGATGGTGAATGGAAACATATCGCTTTCGGCCA
AATGTCATTTATCGAAAATGAAATGGAAAGACTCACGGCTTACATAGAAA
ATCTGCTAGCAAATCTTAAAAGGGGAACCGCTAGAATAATCACTAAACAC
AATAATGATGTCAAAGAAATGAATTTACCGGAATTCCGGGGAACTTTTGA
TTACAACGTTCGCTACGATGGCCCAAAGTTTTTTGAGACAGTGATACAGA
CTTGGTACTATTATCGTTGCTACATCATTTTCTTAGTGAAAAGAGTGTTG
AAAGCGCTTTCACTTTAGACaaaaaattacacgttttttttataagaaca
ttcaaaattcttgaagcctttggatgtttaTAACTCTTTTAGTTTAAAGC
CTAAATTAAATTTCCAAAGAAATCGAGTATTTTAGAAGCCACAAAACCTG
AAAATAAATGTCTTTACaatttgttcttgatattttggccatcgaaacct
tatgtttcTATATAGTTTGTTAAAGAACGTTTAATAATTAGATGAACTTC
AGTTCTAATTTTTTAAACTACACATTTTGAGTTGGTAACCAAGCAttaga
tttcagaaaaatcattACCCGAGTATTTTCTTCGCGGTAAATTTGAGACC
TCATAACTTTTTTCAAGTGAAATTTATAATGTGGCAAAGTTATGCTATAC
GAATGTTTCGCGTCTCTGtatattttttggcattttaaaTCCCATTGTCC
TAATAAATTTATTATAAATTGTCCTTAAGAT Coding sequence (CDS) from alignment at scaffold_233:1297922..1300402 >TCONS_00053780 ID=TCONS_00053780|Name=TCONS_00053780|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_233:1297922..1300402 (Clytia hemisphaerica)
ATGGatttgaataacttttttaacaaatttcatGATGACTTTTGCAACTA
TAAAGTATCAGAAGAGACAGTTAGTGATGTGGAAAGTGCAGTGTTTGAAG
CTCTTactaaaattcttgaaattggAAAAACTCTTCCTGTCGAAGGTTAC
CAAAGGGTGACATTATCATACGATGAAACCTTAAAAAAGCACACCCCCAA
ATACACTTtgttagaaaataaatttgagcATTTGACGTACGGAGATCTTT
TTTCTGTCAAGAAAATTCTACCCGTGGGAAGTTTCTATGAGAAGACAAAG
TTGACTTTACCTGATGAATTTGACTTCAACGTTGAAATAAACGCTGGACA
AATCAAGATTTCTGATGAAGTTGGATGTAGAACAGGTCGtgtgaaaattg
attttgaaaatggtattgAAAACTCAAAAGAACTATCAGAAACTTTTTCC
GGTATGATAAGAAACTctttaaaatgtttatcagACAATGAAAAACTGAT
CAAACGACGAACTGGTTGTTTGCAATTGAAATCTGTGGATGCACTTGGCT
TTGGAATCCCTTGCCTAAAAGCGGAATGGAAAGGCTTATTTCATGAGTTT
TCGCTAACAGTTGATATCCTCCCATCAATAGCTTATCCCGAAGAGTGTAT
TTCTACAATTGTTAATGACGATAATTTTCCATCTGAATTTAAACCACTTC
TACAAAATCATGGCTGCTTTTTGGTACCTAAAAAATGTTCCCCCGAGTGT
CATCAATGTTTCCATATCTCTTTCGCTCAAGAAGAATTACACTTGATGAA
AAACCTGAATGAAGCACACCGAAAATGCTATCGAATCATCAAGAAGTTGA
TATGTGGACATTTAATTGAATCTTATAAATTGAAAACAGCAATATTATAC
CATGTTTACGACTCGGAGAAATGCAACGAAGATTTATCTAAATGTATCTT
TAATATACTTGCTTATCTGTCGAGCAAATTTGACGCATTAGAGATGCCTT
CGTTTTTTCTGGCGATCATCTTGTTTGATTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053780-exon-scaffold_233-1491911889:1297922..1300402 | TCONS_00053780-exon-scaffold_233-1491911889:1297922..1300402 | Clytia hemisphaerica | exon |
| TCONS_00053780-exon-scaffold_233-1510915933:1297922..1300402 | TCONS_00053780-exon-scaffold_233-1510915933:1297922..1300402 | Clytia hemisphaerica | exon |
| TCONS_00053780-exon-scaffold_233-1575043694:1297922..1300402 | TCONS_00053780-exon-scaffold_233-1575043694:1297922..1300402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1297922..1300402 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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