TCONS_00053785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053785
Unique NameTCONS_00053785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053785 ID=TCONS_00053785|Name=TCONS_00053785|organism=Clytia hemisphaerica|type=transcript|length=397bp
GTGGATATCAACAACAATCAATCCTGCCTTGGCTTGTTTGTATGTAAAGT
CTGAAGACCACCTCATCGAATAAACTCTGGCGCTTCAATCAGGCTGCACT
CATCCCACAGTGCAGCCATTCAGCTAAGTGACTAATACTATTTACAACTA
TACTCTAACATCATGCGACAAGATTCTTCATTGTAATACAATAAAGGAAG
TACATTTCTCAAattacttttgcttttatacTCTCCTGCACTCCATTTAT
CATGGATCAAAGTGATAATTCCCCTGAGGTAGATCAGTCCCAAAGATGTA
CCAAAGAATTGGAAACTGAGGATCTAATAGCAGAACTTTGCTTTTATGCC
TCCTTGGATTCTGTAAAATTCTGTTTGCGGAAGTATCAATATGGCAA
Run BLAST on NCBI

transcript from alignment at scaffold_233:1354106..1354502

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053785 ID=TCONS_00053785|Name=TCONS_00053785|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at scaffold_233:1354106..1354502 (Clytia hemisphaerica)
TTGCCATATTGATACTTCCGCAAACAGAATTTTACAGAATCCAAGGAGGC ATAAAAGCAAAGTTCTGCTATTAGATCCTCAGTTTCCAATTCTTTGGTAC ATCTTTGGGACTGATCTACCTCAGGGGAATTATCACTTTGATCCATGATA AATGGAGTGCAGGAGAgtataaaagcaaaagtaatTTGAGAAATGTACTT CCTTTATTGTATTACAATGAAGAATCTTGTCGCATGATGTTAGAGTATAG TTGTAAATAGTATTAGTCACTTAGCTGAATGGCTGCACTGTGGGATGAGT GCAGCCTGATTGAAGCGCCAGAGTTTATTCGATGAGGTGGTCTTCAGACT TTACATACAAACAAGCCAAGGCAGGATTGATTGTTGTTGATATCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033946XLOC_033946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053785-exon-scaffold_233-1491911889:1354106..1354502TCONS_00053785-exon-scaffold_233-1491911889:1354106..1354502Clytia hemisphaericaexon
TCONS_00053785-exon-scaffold_233-1510915933:1354106..1354502TCONS_00053785-exon-scaffold_233-1510915933:1354106..1354502Clytia hemisphaericaexon
TCONS_00053785-exon-scaffold_233-1575043694:1354106..1354502TCONS_00053785-exon-scaffold_233-1575043694:1354106..1354502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1354106..1354502 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.607995 0.855677 1.46831 1.53477 2.29039 1.8099 2.18356 2.83474 2.50185 0.942 0.324141 0.77995 0.643736 1.07606 0.431155 0 0.141665 0.344573 0.802418 0.295324 1.21089 1.45447 0 1.21918 1.70173 1.4466 0 0.782529 0.588451 0.491322
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top