TCONS_00053789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053789
Unique NameTCONS_00053789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053789 ID=TCONS_00053789|Name=TCONS_00053789|organism=Clytia hemisphaerica|type=transcript|length=4697bp
acctcaacatcaAATGCTACAACAGTATCGTCTAACAATGAAACTTGCAT
TCTTCCTTTGACCAAAGAGCTGGTTTGCTTCAACGGTTTTCCATTTGCAT
CCCCGTTCATTTTGGAGTTTATTGGAATATGAATTCATTCCAAAACCATC
TTACTTAATCACTTCTAAACACTCTACCATCCAACTTTTGAATCAATCTA
TGAGTATAATCTTGGTATTGGTGCAATgttaaataaaaagaatttcaGGG
AATCCAGTGCAGTCCAGTGACAAGCCCCAGCCAGAGCACGGGTTGACAGT
TGGAAACAGTTGATGCTGCAAATCTTGAATCTTGATTTCCTGGTGTGTGT
TCCagatttaaagaaattatttagAGAAGAAAGAAGTTATGAAATTGATT
CTACTTGTTTTTGGCTTAATCCAAGCCCATGCATCAGTCCTTGATGTTTT
TGCTTTCACCAATGGACATGAGCCACGAGTTGCCATGAACTGTGATCATG
TACCATTCTACATTGACTTGAAAACCGGATCATGGGTTGAAGACAGCGAA
GGACTTGAAATTTGTGATCACAACAAAGAAGTTGTCAAGAAATACTGTCA
AAAGATGTACCCCAAACTGAACATCACCAACATTGTTGAAGCCAATACAC
CACAAACCTTTAACAACTGGTGCCGATCCGGACAATCCCAATGTACTGAA
GCCAAAGAAGTTGTTCCATACAGATGTTTGGTCAATGAATACGAAGCTGA
TGCTCTTATGGTTCCAGATGGTTGTAAATTTGATCACATCCATGACCCAA
ACCAGTGTTTGAGCCATGACCaatggaaagaaaaagcctCCAAAAAATGT
GACAGCCAatacaaaatgaaattgaaggaCTACGGAATCTTGCTCTCATG
CGGTACTGATGTCTTCACCGGTGTTGAATTTGTCTGCTGCCCAGAGAAAA
TGCCAGAAACCAAACCAGCCCCAAGTGCTGCTACCCCAAAAATCACCAAG
GATGTCTTCCAAGCTGCTGTTGCCAAATTCTTGCAATACTTACCAAGTGT
CACCAAGGGATGTGACAGAAGCACCTATTTGACCAAACAAGCCTCCATGG
GAGAACACCACCAAAGCCAAATCGCTGCTGTTGTCGATGAATGGGACAAT
GCTGAGAAGAGATACAACGACTTGAAGAAAAAAGACCCTGTTGTTgctga
agaaaaaatgaaacGAACCTTGGAAGTTTTCCGACAAACTCTTGCTGCCC
TTGAACAAGAGTCCAAGGACGAGAAAGAACGATTGAGAGTCGAACATGCT
GACTGTATCAACACCCAAATCTCCAAGGACAAGAGAGATGCCATGATCAA
CTATTTGGCCTCCATCCAAAAGGAACCTGCCAATGCTGACGAAATCTTGG
GAGCTGTCCGCAAATTCATCCAAGTCTGCGAACACGACAGAGTCCACAGC
CTCCGACACTTTGAACATGTTCGCCGACGAAATGCAAGCGAAGCCGATTC
CATCCGATCTGAATTATTGCAACACTTAAAGGGATTGAACAAAGTTGTCA
ATGAAAGCATGGCCCTCTTGAACTACTTGCCAACTATTGCCAAGAAATTC
GGACTCACTGGAAACACTGCTGTTTTGAAACCAAAAACTGAATTACCAGA
AATCAAGCACGAAGACCATGTCCATGAACGTGTCAAAGAAATCCTTGAAA
ACAACAAACACCTTGAGGAAGATGATGATGAAGAcgacgatgatgatgat
gaagaatCTATTTTCGTCACATCCAAACCCGTCCCATTGAAGAAATTATT
GGCCGctgccaaaatcaaaaatacCGTCGAGAAAACACCCACTATCAAAT
CTTTGGGTAAAATGGCTGCCAAGATTAAAAACGAATATGATGACTCCGAT
GATGAGGATGATGATAATGACATCATTGCCGATGCTTTCCCAGTCCCACA
AAAAGACGCACCCACCCACCACAAAGGAAAGAAGGAACATCACCGATCAC
CGATGGTTATTAACATCATCTTGGGATTGTGTTGTGGTATCTTGGTCGTC
ATGTTGATTGTCGTTATCGTCATGGTCGTCCAACGCCGACGTGTCGCCCA
CACTCGAGTCGTCATTGCCGAAAATAATGATGACCGTGAGCATTTGATTC
AAATgcaaaaaagtggatttgaaaatccAACCTACAAATTCTTTTATTat
taaatttttccttttttaataataattgGATTTCGAATGATGTATGTGAT
TTAAGAACAAACACGACAtgagaaagaaattttatttgttacttattttg
gttattttggtaaaaaaaatctACATATGTAACCAACCTTGGAAAGATTT
AGTGAGAGAAAATGTAGatagattgaaaaaaaagcaCATTTTCTGTAAGA
AAATTGGTGTTGTCATCACACAAAGTATCGTTGTTGCCACTACTattatt
ttttgtagaaaaaaatttttgtaacaATGAGATCGAATTATAGATGAGTT
GTAGGTCGACTTGGCTCACTCGATTTTTCGATTACTTTTAAAGTTTCTGA
AATTCCCAGTTCGCAAACAGGATTTTGTATCTTTTATCCCTCTTTTGTTG
tacagaaaattgaaaattccccTTGGAATTCTTTCTCAATACAATTCACT
TTAAGAAGGTCTCttgtttttaccattttactttattaaaagaaaaatat
acctTCGTTGTTCTAagtgtaaattttttgattttttatatgatgtaaat
tttaagtattttttttgtGCCCTTTATTATGCCATGCTACCGTTCCACAT
AACTACGATCTGACGACATTGACATTTTGACCAAGACTTAAATAGAATTG
ACTTTCTGACGAAAACATGACTTCGCGATTTAGTACCTGACTTACAAGAC
AAGACTAATTAAGACTGTTACTTCAATGAAACACAGACCTGTGAGGACTG
TTTTTTTAACTACAATACTTTTGAGACAGGACAGACAAAAAAACTTCCTT
CGACTTCTATCGTTaccacaaagaaaaaaagatttgaggGGAGGTATCAG
GAGGCATCTCAAACAACTAAAAAGGAGGTCTAGATAAAGAAAtaggaatt
tcattttcatttgatgCATCAATATCTATCCATCAAACGACGACAAGATA
ATAACAAAACATCAACAttctttttatagtttttttatatagagagaaaa
tgtttttgtcaAGTTAATTAAAAAGCTTTTCTTTTAAGACGCATTTCCTG
ACCCCATGTTTCGAAATAACCTCTTTGTAAAGACGAAATACCGACCGACA
TACACGATAACAAAAGAACTACtctcttttttattagaactctattttac
aagaaaaatctggcTCTAAATCACCACAAAATTGGAAGACAAAAGCTTTT
TGTTGACTTTCATAAAGTATAAATTTGAAGTCTCCCAACctcaattttgg
tgaaaaagaaatatgaCCAATCTCCTGAAGCTTGATTCTTTTAGAGAAAG
ACCTAACGACAGAACAAAAGACATTGACTGCacaaaacaatataatattc
cACCCACACCTCCTGATTACTTTAAACTTTGTTCCTTCACTAATTATGTT
ACACATCATATTACCCATCATctcttgttttttattattaattattttgg
tattttataaTAAATGTTTTAAAAGATGTCTTTTTTAAATTGGAGGATAG
GTACTGTAATGTGAAATTGGTCTATAATAAGGTAACTATAGTAATCAAAC
GCCTTTGAACTTAATTGGAAtgttggttctttcaaaataTAACCAGCCTA
CACCTTCCTTCATTTTTGAAAAGCATTCTactgtctttttttttttaatt
cttatttattttgttaataACAGCTCCTTTTTGCTCTTCTAAGATATCCT
GCCAGACATCCTGGAAATTCAGCATGATTTCTCGGTGATGTTCTCATAGT
ACAATACCTAAGATCTAAAATCTTCGTGATATTCGttgtaaaattcaaat
ttacgtcactttttctacaaaatgtcaatttttatcaGCTTTTTTCGAGC
ATTTGTAATGACGTTTTTAACTAGTGAAAAAGTGTCGTCTGTTATATTCA
GGCGAATATCACGTGTTCTAGTCTTTTACAGGAATCTTAACAAACAACTG
ACCCtaataattttacattttaattttGCTTTGAATCTGATTAACGACTg
tcatttcatttttaatatATATAATGATTCCTTTTGTTCAAGATTTTTCG
AAAGTTTGAAACACCTGGTAAACACACCTACCTACTATGATAATAAGTTC
GGTATCTCAATTTTGTCATATTTGGCACTCAACTGACATTAATCATTATG
TCATAAATTGCGATTCATTATGACACATAATGACGTTTCAGTCTTGATTA
TGACGTAAGAGATACCCTACTAATTATCGCCAGTAGGAGTTTGTGTTTGT
CTATTCGACTAATTtaataattgataaaataaaaaggagctggatttttt
tcttaatccgatttttgtcaattttctttgtctttctGAATATCCCTGTC
TTTTCGTATACACCCAATGTGTTCATAtggatggagtttttacaagattt
tattttcatttatttttctttagttctttTAACTCGTCCATCCTTTGAAA
GGCTAGCTTTCTCTCGTATGATAggagaattgttttttcaaaccgTG
Run BLAST on NCBI

transcript from alignment at scaffold_234:101385..115311+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053789 ID=TCONS_00053789|Name=TCONS_00053789|organism=Clytia hemisphaerica|type=transcript|length=13927bp|location=Sequence derived from alignment at scaffold_234:101385..115311+ (Clytia hemisphaerica)
acctcaacatcaAATGCTACAACAGTATCGTCTAACAATGAAACTTGCAT
TCTTCCTTTGACCAAAGAGCTGGTTTGCTTCAACGGTTTTCCATTTGCAT
CCCCGTTCATTTTGGAGTTTATTGGAATATGAATTCATTCCAAAACCATC
TTACTTAATCACTTCTAAACACTCTACCATCCAACTTTTGAATCAATCTA
TGAGTATAATCTTGGTATTGGTGCAATgttaaataaaaagaatttcaGGG
AATCCAGTGCAGTCCAGTGACAAGCCCCAGCCAGAGCACGGGTTGACAGT
TGGAAACAGTTGATGCTGCAAATCTTGAATCTTGATTTCCTGGTGTGTGT
TCCGTGAGTAAATTTATCAATCCGAATTTCTTCCAGCTCAGTAATACTTC
TATTGTTAAATATCAATGAATGAAATTAAGAAACATTATATAAATAAATA
ATCAATATATTTACACACTGATTTGTTGACAGTACAAAAATCTTGACCac
aatttcttgatttttgaaattctgagaGCGCAACTGAATGCTGTGTTATG
TTTCACATTAGGGAGGGTTTGTTTACAAGATCCGAGAAACaacaatttgt
tgttttactaTTGTGGAGATAAGATGAGCGGATAGTTTAGACCGCGCGCT
CGCGTCGATCTGATTACTGATTTATTGTGACGTTNAATGAGCGGATAGTT
TAGGCCGCGCGCTCGCGTCGATCTGATTACTGATTTATTGTGACGTTGTT
TGTCggtattttgaaaacattcattggttgattttgcCGTCATAAAAAGC
CGGCCGGCAAAACAtctaaaagaaaatcaattaacCTCTTGTCCAATCAA
TTCACTGTAATCTACGACACCAtatatttgattggtttattATCACGTGA
TCTTGTAAATCAGAAAGACAACATGATGACAAAAATTCGTCAAAGAAGAG
GTAAAAATGTAGGGAATCATGGTTGATAAAATGGCTGAGCCAATATAAAT
TGAACTCTCTTCTCAGAATGTCTTACAAAGGGTAATGTATAGACTTTTAT
CATTTTGAAACATTCTTTTCACATGTTTTAAAGGTTTGAGTATGTTATTT
CGAATCTAGCTCGCTTCGCGGCCTATAATTCCTGCAATATTGGTCTGTTT
TGAGCAACAActttttgtgtttgtttgtgTTTGTGTTTGTTGAAACTAAC
CAGCCAGTCAGAGTAAGGATATCTTATAATAGTTGGTTTTAAGAATGATA
TCATTTGCTACTTAATGGATTTAGATGAAATGGTCCTTGAAGAGGCAGGA
CTTAGATGGCCGAGAAAAACTTTGGGAGGGAAAAATTCTGACATTTTaca
tttgacatttttattttgactCTTTTCAGTCCAGtcgaatgggccattcc
agaatttgtctgtaacaggggggcgaacgacacaggatttccaagGACAA
Aagcttttcaccaaaattcaaaatttccaaggcgagagaagaaaatgtat
gaatttccatggcaattgaattaaaaaaggcaaaaaagagtggaatttcc
aacGTATTTTTCGAAAGTACAtgcattttcatttgaaatatccgaccacc
actggagaaaaaaaattatttccgaggctagaaaaaattgcATGTCGTCC
AACAGGGGGTAACAAGAATTTTCTTAAATGGCCCAATCTAATTCCCAAAA
CAGTAACTCTTTTTATAGCTTTGAATTTGCCTTAGgtcattgggctattc
catttttaaaccacaCAGGGGTATTGatgaacttttccaggggggtctga
accttgattttccaaggggtttttggtcattttcagattttccaaggggg
ttattatAGGTTTCCAGGGGTTTCTCTCCTCCTGAACTGGCATCAATAGT
CACTTTCTAGGcccttttttacaaaattttacttTCCAGGGGTGTTGACt
cctaatttccaggggatagtttgttatccaaaatttccaggggggttagt
gaaaaaagttcgtcaataccccggtacaatttttttttggaatagcccat
tttgattgaatttaagagaaagaacaataaaaaagaacaatacctttttc
ataaaacaaaaaattgtgacttcaaattcaatctttttcttcctctaaac
catctaaaaatcttgaaaggtatgattttatttgtctttggtacagtttt
tcaaaaatttgtggTTTATAGGAGAAAATCCTGTTTTAAATTTggctacc
gtaagttggtctaatgtcaataTCTCTCTTTAATTTTGACATCCTTCTTT
GGAGATAGGAAGGTTTGAATCACTGATGGACTCCTTGACTGATTGCTTAG
CCACGCTTAGCGTTATTCCGACACTATAGGCTGGGTGGGTTAGATCGACT
GACGCTAACAAAATTTACTAGAGATATCAATTTTCGAGGCCCGAGAGATG
TtcaaatttctagaaaattatAACCGTCgtacttattattttttagcAGC
CTCTCCATATTCAAGATTTAACAAAACATCCTCACTTAAAATTTGTCTCT
TTTTCACGGCATCAAGAATAACTTTataatcattttctcaagcaaagagt
actcaaagcaattttagctttacgatagtgccgggGATTTTCAGTGGATA
GTatttaattatcattatccctttattttcatttcttgaactttagcaaa
aaaaaaaggaaaaatagaaaagttgtatgtTTTACTGccctattcacata
ctgaattttaaagattttctatGGAATTTTGCAAGATTCAAAAGACTAAC
TTTTGTCTCGCTTTAGtgggactttagcttaagtgcttgcgtccagcatt
gggtacaaagtccaaatatgtggTTCCCATATATGAAGAGTTAGGGCTAT
ACTGTTTTTGTTCGaacttgttcgattgacacGGTCTGGTAATGTCAGCA
TGTATCGTCTAATTCTAACACTTCTTTAGAGATGAATAGTGTAGAAAGGT
TGGAATCTTGACGTGGTCAGaaaggaaaaatcttttttcaatcttaAGTA
CTAGtctagaaaatcttttttcagtcAATAATtccaacctttctatcaat
aaGAAGATTTTGGAATAAGATGAGGGTTGACCTCATTAAATCAACTCACA
GTAGACTTTTCTGGAAATTGACCAtgtgaatttattttcaatctccCTTG
GTCAATAAGTAAATTTGTTTGTGTTAtaaaataatgttttaaaaGCTTAA
ACAATAGGTGGCGTGCTTTTGACACAGTGGATTGCAAAATTCATAGTTTG
CCCCGTTATAAATTAGCCAATGTTTAAATCATTTTAGAAAGGTGGTTTTA
TCTAAATGGAGGATTAAGATGTCAGTGATGTGTTTTTGTGTTTCCCCTGG
TTTTCCCAAATTAGAAGTTTGATTTCTGATTTACCATGCAATGTCTTCTA
TCTTTATTGTTTAGTatgtttcaaaacattcaatttgTAATGATTCTTCT
GTTTTTCGTAGTGCAACAATGTAGGGTAgtatcaaatttttataaaacag
TGAAGAACCCTAGTGTAGGGGTAGTTCTATTTACTTGATGACTATGGCGT
CAgcaggggggggcacgcagttactacaagacatgatgtgtagtaagtgc
tttttcaacactttttttcaggaccaccaccctttgcagttNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGAGGAATTATCAATGACT
GGTTACAAATTTATCTCTCCAAGTTGCTCTTAGTATCAGTAATCGAAACA
GCAATCAGTTATCGGTTAAACCCAACCAGACAAAAAAATCACCAACccta
aaattttcagaatttgtgaAAATAACCGACcaatattgattgattgactt
AAACTAATCTTGACGTTATTAATAGACTAAATACTTTATTACTAGTTCCC
TAGTAGTGATtttcttctctaatttcttTGTTACTTGAACTTTATTCCTC
CTAGCTTTCTCCTCTGACTTCTTCCTTTATCAAACTTATTAACTTTTTTA
CATTGTCAAGAATActcatttacaaaatttttcaaaaactgtatggaGTT
TTCTAACtgatttaatggatgacaaaaatGTATTATGTTTAATTGCTAGT
TATATTGGGAAATCTTTGGCTTGTAACTGTATATACTTTGTCCTATTTGA
TCATTTTGGTGGTGCATAGAGCAAGTTTTCTTTGAAATGGATTTTCAGTA
AAAAAGGGGGATAAATAATTTGACTCCTAAATTGAttttaagtacctgaa
aattgGACTGGTCTTGGTATGGTATCATGAGCGATCTAGTAGCGGTCAAA
TTTGTTTTAGATTGGCCTTCAGACCTTCtacgaaatttgattttaaaagg
tCCTGGTCGCTCGTTagactaccttattggaactaattttcgcggtcgaa
aaaaaatatccaaaaaattgcatttcgcgggttctaattttcgcggtttt
ttccattctggaattttcgcagttttgcccatttttggacaaatttctct
cattttcctagggatttttcaaatttttcgataaaattggaaaaaattgt
atttcgcaggaattaatttttgcggttttcaactctcaaaattttttgtg
ggatcaaattttcgcgattttgacgaagaaccgcgaaaaacgctaaaatt
aaaacccgtgaaaattagttccaataaggtagtccTGACCTCTAGTTAGT
GTTTTTAGTAACAATTACATCAAACAAATTGTTATAAAAGGATGTCAACT
GGTCAATTGAGGTTGGTCTTGATCCAAATGCATCAAAATGACAGTTAAAT
TAACTGGACTCGTCTCTTTGTGGCCTTTTGTCAAAGTTTTACCGGTCATT
TACTAGCCTTGAAAAGACAGTCTGAAGACCAGTccgattttcaggtactt
aaaaTTGCTGAGCAAGGcacaaatttcatttaaaaagagGAAATGACAGA
AACGAGGGGAATCATACCCCTCTTTTATTAGCAGGTATTAGCCTAAAATT
TATATtctttatattattattatacatTTTCCAGTCTAAATAGACAATTA
TGGatattattcattatttttgtatgGCATCGTCATGTTTTGCAAAACCA
CTATTAATGACGAAATAACTGACACATAACAAACATTATTCAGACTCATG
GTCTTGATCTAAACATAGAATGCAGAGGGATCCAGCCcccagaaaaaagg
aaaataggCCCAGCTAAATTTCAAAACGTAGCCCCCACCTTCAAAAtagc
aaagaaattttgcatccaaattctcaataaatgtattttaataTGATAAG
ATAGCCCccagaatctttaaaaaatggtttaccctccccccccccaaaaa
aaaaaaaaaactcaggGGGGGGCATTCCATGGccagaatttaatttttaa
aatggtTTTGCTCCTTCCTGCAGTTCATGAAAATCTTCCATAAGGAAGCC
ACATCCTAGAAGGGCAGGGCAACGTCGGGTAGCAGCCAAATAAGAGCACT
TTTTGGagtattttttataaaacttgtttttaccttaattttgtttaaaa
accaAATACTTAAAAGGCATGAAAATGGCCTGATACTCTTTGCAGTGGAT
TTTGCTTGACTGGTACGAAACTTTAGTTCAGTCCTCAACTTGgtgaataa
ttagaatttacgTTGTGTATTAGTATTGAAGCGGTCATTTCTCCTGTTTT
TCTATTCAATATGTCTATGTTCGTCTCAATTCACCTTCTTTTTTTTCGCT
GatgttttcatcttcttttcaATTATTGTCATTCTGATACCAttgtcaat
acttttctttaattttgttaATCCCCAGATTTGTACAGTTATCAATTCAA
GATcttcatgaaaaattatttttactacACAGAAACAGCTGGACCATTTT
CTTACATTTATACATATTTATATACTAATCAAActgtttttcttcctttt
atctCTATGTGATTCTGAGGGTTATTATTTATTGGTTTAAGTTGTAAAGA
ACACTCTTATTAGGGGGTCAAAATACTGATGGTACTTCAAAAGGTCATTA
TTAGGAAACTATTTGAAGGCATTTGAAGCAAAATTCAGGCCACAGGATCC
TTTAAAAGTCAATCTAGTGAGTTGAACCCAAAAAATATCCACTGCCGGGT
GTGAACAAATTTTTTCCCTAAATTTCCTGAAATTTCTATCCCTAATCTTT
TAAAGCATTCGTCAAGGTTAAAAGGATGGTCttttttgggacaagctgga
gtttttacaagctcttatttgatttggttggtcgttaagatgtaataaaa
gaatcttattactttttctaaagaacgcgtcatctctatcactttaaatg
accaattagtgaagtatcttgtaaaaactctagCTCATCATCCCTCTCTT
TTGCCTTAAAACTGCAGTAATTTGACACCACTATTAGAAATGTAGGTTTT
GTGTTTGAATTTTCAGCTAAATAAGAATGTGCGCCTAATTTTTTCTCCTG
TTATTCTAATGCTCCCTGCTTTTACATGGGGTCAAGTTTAGTTGAACTTT
GACAATGGCCATGTCATAGTTAactatgtttatgtttctttatAATTGCA
ATACTTAGAAATTGTCAAGTTACTTATTTGAGACAGTGTAAACATTTgca
ttttttctatttcattgaTGGTGGGGAATTTATTCTTTCTGTATTCCTAG
TGGTTAAGCAGTGAGACTTTGAGAAAGAGACAACATTTTAACAAAGACGT
TTTTTTAACAATATTCTTAATATGTTGAATCTAATGAATGAGATTTGTTA
TGATCTTTTCAATTTGGATTTTGTGTATCTATTTAGTGAGTGTGGGTTTT
TTGCAGAAGAAAAACCCCTGCTGTTTCATTCCTCTTTCTATTTAACTAAC
ATtccatgaaaaattgatgaagactTTTCAAAGTTTCTTCACAATCTTCC
CTTGACTCACAATCAACTTgatgaaaataggaaaaaatgaAATAGGAAAG
AAAACGTTTTCTCAGCATGTTTTATAATGGGggaaaagtaaaaagtaaag
tCTTTCTGGGTTTTACAAGAttgctttttcatttttgtatacAGTAAATT
TTATGTCAACAGTGAATTACACTTCTTgattatcatgaaaattttcttga
tagttttttatcaattattcaTCTATTTCATCATTGTAAatgtgagagaa
aaaaattgataaaaacttaTTCAATGTCTCTCTATAATATCTTTTGCTCA
AGAAAGTAAACTACTAAAAAGTATGATGAAAAGACCATTGTGTCTTTTTA
CAAATTTAATTAATACTACATGAAAGCAAGCTGGTTTTTACCAATCTTTA
TGCATTGAGATAAATTGCACCACTCTCATGAGAGTATTGACTTATTTAGT
AATGATGTCACAAGTTATGTGATTAGCTTCTTACATGGAAACCAGGCTGC
TTTCCTGATGACCAGTTGATTGTTATTATATTGCTGCTAATGGTGAaatg
agaagaaaaattacagaaaatcaTAGGAGCGGAAAATTTGAAGGGAATTT
TATAATACCTCTATTATGACGACACTTATTGACGCATTAAAAAGCTATTC
AGTCATTTTTTGATGCATtcattttgtttctttctaatGGACATACCCTG
CTTTCGACTTGTATAAAAAGTTTTGtgttgagaaaattattttcagtgac
aAAAAAATTCGCATAGCATAcactgtatatatttttaagaaaactaattt
attaatacaaatttttatagagatttaaagaaattatttagAGAAGAAAG
AAGTTATGAAATTGATTCTACTTGTTTTTGGCTTAATCCAAGCCCATGCA
TCAGTCCTTGATGTTTTTGCTTTCACCAATGGACATGAGCCACGAGTTGC
CATGAACTGTGATCATGTACCATTCTACATTGACTTGAAAACCGGATCAT
GGGTTGAAGACAGCGAAGGACTTGAAATTTGTGATCACAACAAAGAAGTT
GTCAAGAAGTaagttttttcatttcttatttaagaaaattttgacatttt
tcaatgtTTCTTACCTTGGCCTGAATTAATATGGTTATCcctttttttgt
gatttcaatAACATTCGACAGACTGATATGGTTGATttcttttaaatgat
tttttttgactgtgcCCCAGAATCAGTAAGTCTTGTATTGCTCAAAATAC
TCATAATTTTTGTCCATCCTTGATCTTCAGATACTGTCAAAAGATGTACC
CCAAACTGAACATCACCAACATTGTTGAAGCCAATACACCACAAACCTTT
AACAACTGGTGCCGATCCGGACAATCCCAATGTACTGAAGCCAAAGAAGT
TGTTCCATACAGATGTTTGGTCAATGAATACGAAGCTGATGCTCTTATGG
TTCCAGATGGTTGTAAATTTGATCACATCCATGACCCAAACCAGTGTTTG
AGCCATGACCaatggaaagaaaaagcctCCAAAAAATGTGACAGCCAata
caaaatgaaattgaaggaCTACGGAATCTTGCTCTCATGCGGTACTGATG
TCTTCACCGGTGTTGAATTTGTCTGCTGCCCAGAGAAAATGCCAGAAACC
AAACCAGCCCCAAGTGCTGCTACCCCAAAAATCACCAAGGATGTCTTCCA
AGCTGCTGTTGCCAAATTCTTGCAATACTTACCAAGTGTCACCAAGGGAT
GTGACAGAAGCACCTATTTGACCAAACAAGCCTCCATGGGAGAACACCAC
CAAAGCCAAATCGCTGCTGTTGTCGATGAATGGGACAATGCTGAGAAGAG
ATACAACGACTTGAAGAAAAAAGACCCTGTTGTTgctgaagaaaaaatga
aacgtAAGGAGAGTTATGATTTGTGAGAATTTGCTTCATGCACTGTGTTT
AGATTACTTTATTTACTGTGTCCACTAGCAAGGATGAAACCTACAACATT
TTAATGAGTTTTCTTTGTATTCTTTTCAGGAACCTTGGAAGTTTTCCGAC
AAACTCTTGCTGCCCTTGAACAAGAGTCCAAGGACGAGAAAGAACGATTG
AGAGTCGAACATGCTGACTGTATCAACACCCAAATCTCCAAGGACAAGAG
AGATGCCATGATCAACTATTTGGCCTCCATCCAAAAGGAACCTGCCAATG
CTGACGAAATCTTGGGAGCTGTCCGCAAATTCATCCAAGTCTGCGAACAC
GACAGAGTCCACAGCCTCCGACACTTTGAACATGTTCGCCGACGAAATGC
AAGCGAAGCCGATTCCATCCGATCTGAATTATTGCAACACTTAAAGGGAT
TGAACAAAGTTGTCAATGAAAGCATGGCCCTCTTGAACTACTTGCCAACT
ATTGCCAAGAAATTCGGACTCACTGGAAACACTGCTGTTTTGAAACCAAA
AGTGAGTGTTGTTTTTTCTTGGGAAATTTTTGTAGGAATTGAGGATGATG
AAAAGATTTCTGAGTGTATTAAGAGAAAGGAGAACGTCCCTACTTTGTAT
TTTAAAGTTTGTgttttttagaaaactttttaacacctttttgttcgttt
ttgaagaattttagtGTGAATTCATGTGTTATTTTAATGTTGTTTATATC
TCTACAGACTGAATTACCAGAAATCAAGCACGAAGACCATGTCCATGAAC
GTGTCAAAGAAATCCTTGAAAACAACAAACACCTTGAGGTACATTTTCTA
ATCGTGATAAGCTTTTTTATCACCTTTTTCTGGCATTTAGATACACCtca
gaaattttaaaacttttcgtTAAATGGTATAAGGAGAAAAAATTAGCTTT
CCAAGCTTTTTCTGATTCgagaatttttaatttcttactAAAATTATCTG
CTTGGATTCCTTGAATTTTTAATCCATGACTTAAAAATTAATCGATTTTT
TGACGAGAGGTTATAACCCCTAATTTATACTCTGTTCACTCCTCAAAACG
TCACGACAAGGTCAAGTTTTGTAAGAATTTATGcaatttagaattttcaa
aattcatgatGGAGATTTCTCTTAATCCTAGACTTTTCCTTCCGTAAAAA
GCTTCTTGATGAATTCAATTCTTAGAACCAATGAAGAGCTAGTATTTCGA
TTTTCTATCCTTTTCACTTTGTTCTTGGTTGCACACACTAAACTGTGTAA
TTCTTAAAGTCTAAAATTTAATCATGGTTCGTGTGTCCATTTTTTAGGAA
GATGATGATGAAGAcgacgatgatgatgatgaagaatCTATTTTCGTCAC
ATCCAAACCCGTCCCATTGAAGAAATTATTGGCCGctgccaaaatcaaaa
atacCGTCGAGAAAACACCCACTATCAAATCTTTGGGTAAAATGGCTGCC
AAGATTAAAAACGAATATGATGACTCCGATGATGAGGATGATGATAATGA
CATCATTGCCGATGCTTTCCCAGTCCCACAAAAAGACGCACCCACCCACC
ACAAAGGAAAGAAGGAACATCACCGATCACCGATGGTTATTAACATCATC
TTGGGATTGTGTTGTGGTATCTTGGTCGTCATGTTGATTGTCGTTATCGT
CATGGTCGTCCAACGCCGACGTGTCGCCCACACTCGAGTCGTCATTGCCG
AAAATAATGATGACCGTGAGCATTTGATTCAAATgcaaaaaagtggattt
gaaaatccAACCTACAAATTCTTTTATTattaaatttttccttttttaat
aataattgGATTTCGAATGATGTATGTGATTTAAGAACAAACACGACAtg
agaaagaaattttatttgttacttattttggttattttggtaaaaaaaat
ctACATATGTAACCAACCTTGGAAAGATTTAGTGAGAGAAAATGTAGata
gattgaaaaaaaagcaCATTTTCTGTAAGAAAATTGGTGTTGTCATCACA
CAAAGTATCGTTGTTGCCACTACTattattttttgtagaaaaaaattttt
gtaacaATGAGATCGAATTATAGATGAGTTGTAGGTCGACTTGGCTCACT
CGATTTTTCGATTACTTTTAAAGTTTCTGAAATTCCCAGTTCGCAAACAG
GATTTTGTATCTTTTATCCCTCTTTTGTTGtacagaaaattgaaaattcc
ccTTGGAATTCTTTCTCAATACAATTCACTTTAAGAAGGTCTCttgtttt
taccattttactttattaaaagaaaaatatacctTCGTTGTTCTAagtgt
aaattttttgattttttatatgatgtaaattttaagtattttttttgtGC
CCTTTATTATGCCATGCTACCGTTCCACATAACTACGATCTGACGACATT
GACATTTTGACCAAGACTTAAATAGAATTGACTTTCTGACGAAAACATGA
CTTCGCGATTTAGTACCTGACTTACAAGACAAGACTAATTAAGACTGTTA
CTTCAATGAAACACAGACCTGTGAGGACTGTTTTTTTAACTACAATACTT
TTGAGACAGGACAGACAAAAAAACTTCCTTCGACTTCTATCGTTaccaca
aagaaaaaaagatttgaggGGAGGTATCAGGAGGCATCTCAAACAACTAA
AAAGGAGGTCTAGATAAAGAAAtaggaatttcattttcatttgatgCATC
AATATCTATCCATCAAACGACGACAAGATAATAACAAAACATCAACAttc
tttttatagtttttttatatagagagaaaatgtttttgtcaAGTTAATTA
AAAAGCTTTTCTTTTAAGACGCATTTCCTGACCCCATGTTTCGAAATAAC
CTCTTTGTAAAGACGAAATACCGACCGACATACACGATAACAAAAGAACT
ACtctcttttttattagaactctattttacaagaaaaatctggcTCTAAA
TCACCACAAAATTGGAAGACAAAAGCTTTTTGTTGACTTTCATAAAGTAT
AAATTTGAAGTCTCCCAACctcaattttggtgaaaaagaaatatgaCCAA
TCTCCTGAAGCTTGATTCTTTTAGAGAAAGACCTAACGACAGAACAAAAG
ACATTGACTGCacaaaacaatataatattccACCCACACCTCCTGATTAC
TTTAAACTTTGTTCCTTCACTAATTATGTTACACATCATATTACCCATCA
TctcttgttttttattattaattattttggtattttataaTAAATGTTTT
AAAAGATGTCTTTTTTAAATTGGAGGATAGGTACTGTAATGTGAAATTGG
TCTATAATAAGGTAACTATAGTAATCAAACGCCTTTGAACTTAATTGGAA
tgttggttctttcaaaataTAACCAGCCTACACCTTCCTTCATTTTTGAA
AAGCATTCTactgtctttttttttttaattcttatttattttgttaataA
CAGCTCCTTTTTGCTCTTCTAAGATATCCTGCCAGACATCCTGGAAATTC
AGCATGATTTCTCGGTGATGTTCTCATAGTACAATACCTAAGATCTAAAA
TCTTCGTGATATTCGttgtaaaattcaaatttacgtcactttttctacaa
aatgtcaatttttatcaGCTTTTTTCGAGCATTTGTAATGACGTTTTTAA
CTAGTGAAAAAGTGTCGTCTGTTATATTCAGGCGAATATCACGTGTTCTA
GTCTTTTACAGGAATCTTAACAAACAACTGACCCtaataattttacattt
taattttGCTTTGAATCTGATTAACGACTgtcatttcatttttaatatAT
ATAATGATTCCTTTTGTTCAAGATTTTTCGAAAGTTTGAAACACCTGGTA
AACACACCTACCTACTATGATAATAAGTTCGGTATCTCAATTTTGTCATA
TTTGGCACTCAACTGACATTAATCATTATGTCATAAATTGCGATTCATTA
TGACACATAATGACGTTTCAGTCTTGATTATGACGTAAGAGATACCCTAC
TAATTATCGCCAGTAGGAGTTTGTGTTTGTCTATTCGACTAATTtaataa
ttgataaaataaaaaggagctggatttttttcttaatccgatttttgtca
attttctttgtctttctGAATATCCCTGTCTTTTCGTATACACCCAATGT
GTTCATAtggatggagtttttacaagattttattttcatttatttttctt
tagttctttTAACTCGTCCATCCTTTGAAAGGCTAGCTTTCTCTCGTATG
ATAggagaattgttttttcaaaccgTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033950XLOC_033950Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053789-exon-scaffold_234-1491911889:101385..101737TCONS_00053789-exon-scaffold_234-1491911889:101385..101737Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1510915933:101385..101737TCONS_00053789-exon-scaffold_234-1510915933:101385..101737Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1575043694:101385..101737TCONS_00053789-exon-scaffold_234-1575043694:101385..101737Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1491911889:109905..110142TCONS_00053789-exon-scaffold_234-1491911889:109905..110142Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1510915933:109905..110142TCONS_00053789-exon-scaffold_234-1510915933:109905..110142Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1575043694:109905..110142TCONS_00053789-exon-scaffold_234-1575043694:109905..110142Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1491911889:110365..110987TCONS_00053789-exon-scaffold_234-1491911889:110365..110987Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1510915933:110365..110987TCONS_00053789-exon-scaffold_234-1510915933:110365..110987Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1575043694:110365..110987TCONS_00053789-exon-scaffold_234-1575043694:110365..110987Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1491911889:111114..111535TCONS_00053789-exon-scaffold_234-1491911889:111114..111535Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1510915933:111114..111535TCONS_00053789-exon-scaffold_234-1510915933:111114..111535Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1575043694:111114..111535TCONS_00053789-exon-scaffold_234-1575043694:111114..111535Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1491911889:111742..111822TCONS_00053789-exon-scaffold_234-1491911889:111742..111822Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1510915933:111742..111822TCONS_00053789-exon-scaffold_234-1510915933:111742..111822Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1575043694:111742..111822TCONS_00053789-exon-scaffold_234-1575043694:111742..111822Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1491911889:112332..115311TCONS_00053789-exon-scaffold_234-1491911889:112332..115311Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1510915933:112332..115311TCONS_00053789-exon-scaffold_234-1510915933:112332..115311Clytia hemisphaericaexon
TCONS_00053789-exon-scaffold_234-1575043694:112332..115311TCONS_00053789-exon-scaffold_234-1575043694:112332..115311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:101385..115311 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.154444	19.5348	11.7848	15.3285	27.6439	0	3.61508e-07	1.9845e-10	3.82546e-07	3.56695e-09	9.32448e-09	5.37501e-08	0	0.285698	2.5996e-08	6.69838e-10	1.15333e-08	4.04073e-07	0.0128196	0	0	3.10839	12.3737	0	0	0	0.443044
Blast
[Close]
BLAST of TCONS_00053789 vs. Swiss-Prot (Human)
Match: APLP1 (Amyloid-like protein 1 OS=Homo sapiens GN=APLP1 PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.104e-50
Identity = 130/459 (28.32%), Postives = 218/459 (47.49%), Query Frame = 2 
Query:  476 RVAMNCDHVPFYIDLKTGSWVEDSEGLEICDHNKEVVKKYCQKMYPKLNITNIVEANTPQTFNNWCRSGQS-QCTEAK-EVVPYRCLVNEYEADALMVPDGCKFDHIHDPNQCLSHDQWKEKASKKCDSQYKMKLKDYGILLSCGTDVFTGVEFVCCPEKMPETKPAPSAAT---------------------------PKITKDVF----QA---------------AVAKFLQYLPSVTKGCD-----------RSTYLTKQASMGEHHQSQIAAVVDEWDNAEKRYNDLKKKDPVVAEEKMKRTL-EVFRQTLAALEQESKDEKERLRVEHADCINTQISKDKRDAMINYLASIQKEPANADEILGAVRKFIQVCEHDRVHSLRHFEHVRRRNASEADSIRSELLQHLKGLNKVVNESMALLNYLPTIAKKFGLTGNTAVLKPKTELPEIKHEDHV 1672
            +VA  C  +  + DL+TG W  D +    C  + + V +YC++MYP+L I  + +A        WC   +S  C     +VVP+RCL  E+ ++AL+VP+GC+F H    +QC S  +  ++A + C SQ  + L   G+LL CG+D F GVE+VCCP   P   P PS                              P+   D F    QA               AV   +   P  T G D              +L  +  + E    QI  V+ EW  A+ +  +L K D        ++ L E F+  L  LE++   E++RL   HA  +   I+  +R A+  +LA++Q +P  A+ +L A+R++++  + ++ H+LRH++HV   +  +A  +R ++  HL+ + + VN+S+ LL+  P +A++         L+P+ +  E+ H +H+
Sbjct:   55 QVAGLCGRLTLHRDLRTGRWEPDPQRSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAIPMERWCGGSRSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQEACSSQ-GLILHGSGMLLPCGSDRFRGVEYVCCP---PPGTPDPSGTAVGDPSTRSWPPGSRVEGAEDEEEEESFPQPVDDYFVEPPQAEEEEETVPPPSSHTLAVVGKVTPTPRPTDGVDIYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKAD--------RQALNEHFQSILQTLEEQVSGERQRLVETHATRVIALINDQRRAALEGFLAALQADPPQAERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVHTHLQVIEERVNQSLGLLDQNPHLAQE---------LRPQIQ--ELLHSEHL 490
The following BLAST results are available for this feature:
BLAST of TCONS_00053789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APLP12.104e-5028.32Amyloid-like protein 1 OS=Homo sapiens GN=APLP1 PE... [more]
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