TCONS_00053791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053791
Unique NameTCONS_00053791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053791 ID=TCONS_00053791|Name=TCONS_00053791|organism=Clytia hemisphaerica|type=transcript|length=4452bp
CCATTGTGTCTTTTTACAAATTTAATTAATACTACATGAAAGCAAGCTGG
TTTTTACCAATCTTTATGCATTGAGATAAATTGCACCACTCTCATGAGAG
TATTGACTTATTTAGTAATGATGTCACAAGTTATGTGATTAGCTTCTTAC
ATGGAAACCAGGCTGCTTTCCTGATGACCAGTTGATTGTTATTATATTGC
TGCTAATGGTGAaatgagaagaaaaattacagaaaatcaTAGGAGCGGAA
AATTTGAAGGGAATTTTATAATACCTCTATTATGACGACACTTATTGACG
CATTAAAAAGCTATTCAGTCATTTTTTGATGCATtcattttgtttctttc
taatGGACATACCCTGCTTTCGACTTGTATAAAAAGTTTTGtgttgagaa
aattattttcagtgacaAAAAAATTCGCATAGCATAcactgtatatattt
ttaagaaaactaatttattaatacaaatttttatagagatttaaagaaat
tatttagAGAAGAAAGAAGTTATGAAATTGATTCTACTTGTTTTTGGCTT
AATCCAAGCCCATGCATCAGTCCTTGATGTTTTTGCTTTCACCAATGGAC
ATGAGCCACGAGTTGCCATGAACTGTGATCATGTACCATTCTACATTGAC
TTGAAAACCGGATCATGGGTTGAAGACAGCGAAGGACTTGAAATTTGTGA
TCACAACAAAGAAGTTGTCAAGAAATACTGTCAAAAGATGTACCCCAAAC
TGAACATCACCAACATTGTTGAAGCCAATACACCACAAACCTTTAACAAC
TGGTGCCGATCCGGACAATCCCAATGTACTGAAGCCAAAGAAGTTGTTCC
ATACAGATGTTTGGTCAATGAATACGAAGCTGATGCTCTTATGGTTCCAG
ATGGTTGTAAATTTGATCACATCCATGACCCAAACCAGTGTTTGAGCCAT
GACCaatggaaagaaaaagcctCCAAAAAATGTGACAGCCAatacaaaat
gaaattgaaggaCTACGGAATCTTGCTCTCATGCGGTACTGATGTCTTCA
CCGGTGTTGAATTTGTCTGCTGCCCAGAGAAAATGCCAGAAACCAAACCA
GCCCCAAGTGCTGCTACCCCAAAAATCACCAAGGATGTCTTCCAAGCTGC
TGTTGCCAAATTCTTGCAATACTTACCAAGTGTCACCAAGGGATGTGACA
GAAGCACCTATTTGACCAAACAAGCCTCCATGGGAGAACACCACCAAAGC
CAAATCGCTGCTGTTGTCGATGAATGGGACAATGCTGAGAAGAGATACAA
CGACTTGAAGAAAAAAGACCCTGTTGTTgctgaagaaaaaatgaaacGAA
CCTTGGAAGTTTTCCGACAAACTCTTGCTGCCCTTGAACAAGAGTCCAAG
GACGAGAAAGAACGATTGAGAGTCGAACATGCTGACTGTATCAACACCCA
AATCTCCAAGGACAAGAGAGATGCCATGATCAACTATTTGGCCTCCATCC
AAAAGGAACCTGCCAATGCTGACGAAATCTTGGGAGCTGTCCGCAAATTC
ATCCAAGTCTGCGAACACGACAGAGTCCACAGCCTCCGACACTTTGAACA
TGTTCGCCGACGAAATGCAAGCGAAGCCGATTCCATCCGATCTGAATTAT
TGCAACACTTAAAGGGATTGAACAAAGTTGTCAATGAAAGCATGGCCCTC
TTGAACTACTTGCCAACTATTGCCAAGAAATTCGGACTCACTGGAAACAC
TGCTGTTTTGAAACCAAAAACTGAATTACCAGAAATCAAGCACGAAGACC
ATGTCCATGAACGTGTCAAAGAAATCCTTGAAAACAACAAACACCTTGAG
GAAGATGATGATGAAGAcgacgatgatgatgatgaagaatCTATTTTCGT
CACATCCAAACCCGTCCCATTGAAGAAATTATTGGCCGctgccaaaatca
aaaatacCGTCGAGAAAACACCCACTATCAAATCTTTGGGTAAAATGGCT
GCCAAGATTAAAAACGAATATGATGACTCCGATGATGAGGATGATGATAA
TGACATCATTGCCGATGCTTTCCCAGTCCCACAAAAAGACGCACCCACCC
ACCACAAAGGAAAGAAGGAACATCACCGATCACCGATGGTTATTAACATC
ATCTTGGGATTGTGTTGTGGTATCTTGGTCGTCATGTTGATTGTCGTTAT
CGTCATGGTCGTCCAACGCCGACGTGTCGCCCACACTCGAGTCGTCATTG
CCGAAAATAATGATGACCGTGAGCATTTGATTCAAATgcaaaaaagtgga
tttgaaaatccAACCTACAAATTCTTTTATTattaaatttttcctttttt
aataataattgGATTTCGAATGATGTATGTGATTTAAGAACAAACACGAC
Atgagaaagaaattttatttgttacttattttggttattttggtaaaaaa
aatctACATATGTAACCAACCTTGGAAAGATTTAGTGAGAGAAAATGTAG
atagattgaaaaaaaagcaCATTTTCTGTAAGAAAATTGGTGTTGTCATC
ACACAAAGTATCGTTGTTGCCACTACTattattttttgtagaaaaaaatt
tttgtaacaATGAGATCGAATTATAGATGAGTTGTAGGTCGACTTGGCTC
ACTCGATTTTTCGATTACTTTTAAAGTTTCTGAAATTCCCAGTTCGCAAA
CAGGATTTTGTATCTTTTATCCCTCTTTTGTTGtacagaaaattgaaaat
tccccTTGGAATTCTTTCTCAATACAATTCACTTTAAGAAGGTCTCttgt
ttttaccattttactttattaaaagaaaaatatacctTCGTTGTTCTAag
tgtaaattttttgattttttatatgatgtaaattttaagtattttttttg
tGCCCTTTATTATGCCATGCTACCGTTCCACATAACTACGATCTGACGAC
ATTGACATTTTGACCAAGACTTAAATAGAATTGACTTTCTGACGAAAACA
TGACTTCGCGATTTAGTACCTGACTTACAAGACAAGACTAATTAAGACTG
TTACTTCAATGAAACACAGACCTGTGAGGACTGTTTTTTTAACTACAATA
CTTTTGAGACAGGACAGACAAAAAAACTTCCTTCGACTTCTATCGTTacc
acaaagaaaaaaagatttgaggGGAGGTATCAGGAGGCATCTCAAACAAC
TAAAAAGGAGGTCTAGATAAAGAAAtaggaatttcattttcatttgatgC
ATCAATATCTATCCATCAAACGACGACAAGATAATAACAAAACaatataa
tattccACCCACACCTCCTGATTACTTTAAACTTTGTTCCTTCACTAATT
ATGTTACACATCATATTACCCATCATctcttgttttttattattaattat
tttggtattttataaTAAATGTTTTAAAAGATGTCTTTTTTAAATTGGAG
GATAGGTACTGTAATGTGAAATTGGTCTATAATAAGGTAACTATAGTAAT
CAAACGCCTTTGAACTTAATTGGAAtgttggttctttcaaaataTAACCA
GCCTACACCTTCCTTCATTTTTGAAAAGCATTCTactgtctttttttttt
taattcttatttattttgttaataACAGCTCCTTTTTGCTCTTCTAAGAT
ATCCTGCCAGACATCCTGGAAATTCAGCATGATTTCTCGGTGATGTTCTC
ATAGTACAATACCTAAGATCTAAAATCTTCGTGATATTCGttgtaaaatt
caaatttacgtcactttttctacaaaatgtcaatttttatcaGCTTTTTT
CGAGCATTTGTAATGACGTTTTTAACTAGTGAAAAAGTGTCGTCTGTTAT
ATTCAGGCGAATATCACGTGTTCTAGTCTTTTACAGGAATCTTAACAAAC
AACTGACCCtaataattttacattttaattttGCTTTGAATCTGATTAAC
GACTgtcatttcatttttaatatATATAATGATTCCTTTTGTTCAAGATT
TTTCGAAAGTTTGAAACACCTGGTAAACACACCTACCTACTATGATAATA
AGTTCGGTATCTCAATTTTGTCATATTTGGCACTCAACTGACATTAATCA
TTATGTCATAAATTGCGATTCATTATGACACATAATGACGTTTCAGTCTT
GATTATGACGTAAGAGATACCCTACTAATTATCGCCAGTAGGAGTTTGTG
TTTGTCTATTCGACTAATTtaataattgataaaataaaaaggagctggat
ttttttcttaatccgatttttgtcaattttctttgtctttctGAATATCC
CTGTCTTTTCGTATACACCCAATGTGTTCATAtggatggagtttttacaa
gattttattttcatttatttttctttagttctttTAACTCGTCCATCCTT
TGAAAGGCTAGCTTTCTCTCGTATGATAggagaattgttttttcaaaccg
TG
Run BLAST on NCBI

transcript from alignment at scaffold_234:109419..115311+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053791 ID=TCONS_00053791|Name=TCONS_00053791|organism=Clytia hemisphaerica|type=transcript|length=5893bp|location=Sequence derived from alignment at scaffold_234:109419..115311+ (Clytia hemisphaerica)
CCATTGTGTCTTTTTACAAATTTAATTAATACTACATGAAAGCAAGCTGG
TTTTTACCAATCTTTATGCATTGAGATAAATTGCACCACTCTCATGAGAG
TATTGACTTATTTAGTAATGATGTCACAAGTTATGTGATTAGCTTCTTAC
ATGGAAACCAGGCTGCTTTCCTGATGACCAGTTGATTGTTATTATATTGC
TGCTAATGGTGAaatgagaagaaaaattacagaaaatcaTAGGAGCGGAA
AATTTGAAGGGAATTTTATAATACCTCTATTATGACGACACTTATTGACG
CATTAAAAAGCTATTCAGTCATTTTTTGATGCATtcattttgtttctttc
taatGGACATACCCTGCTTTCGACTTGTATAAAAAGTTTTGtgttgagaa
aattattttcagtgacaAAAAAATTCGCATAGCATAcactgtatatattt
ttaagaaaactaatttattaatacaaatttttatagagatttaaagaaat
tatttagAGAAGAAAGAAGTTATGAAATTGATTCTACTTGTTTTTGGCTT
AATCCAAGCCCATGCATCAGTCCTTGATGTTTTTGCTTTCACCAATGGAC
ATGAGCCACGAGTTGCCATGAACTGTGATCATGTACCATTCTACATTGAC
TTGAAAACCGGATCATGGGTTGAAGACAGCGAAGGACTTGAAATTTGTGA
TCACAACAAAGAAGTTGTCAAGAAGTaagttttttcatttcttatttaag
aaaattttgacatttttcaatgtTTCTTACCTTGGCCTGAATTAATATGG
TTATCcctttttttgtgatttcaatAACATTCGACAGACTGATATGGTTG
ATttcttttaaatgattttttttgactgtgcCCCAGAATCAGTAAGTCTT
GTATTGCTCAAAATACTCATAATTTTTGTCCATCCTTGATCTTCAGATAC
TGTCAAAAGATGTACCCCAAACTGAACATCACCAACATTGTTGAAGCCAA
TACACCACAAACCTTTAACAACTGGTGCCGATCCGGACAATCCCAATGTA
CTGAAGCCAAAGAAGTTGTTCCATACAGATGTTTGGTCAATGAATACGAA
GCTGATGCTCTTATGGTTCCAGATGGTTGTAAATTTGATCACATCCATGA
CCCAAACCAGTGTTTGAGCCATGACCaatggaaagaaaaagcctCCAAAA
AATGTGACAGCCAatacaaaatgaaattgaaggaCTACGGAATCTTGCTC
TCATGCGGTACTGATGTCTTCACCGGTGTTGAATTTGTCTGCTGCCCAGA
GAAAATGCCAGAAACCAAACCAGCCCCAAGTGCTGCTACCCCAAAAATCA
CCAAGGATGTCTTCCAAGCTGCTGTTGCCAAATTCTTGCAATACTTACCA
AGTGTCACCAAGGGATGTGACAGAAGCACCTATTTGACCAAACAAGCCTC
CATGGGAGAACACCACCAAAGCCAAATCGCTGCTGTTGTCGATGAATGGG
ACAATGCTGAGAAGAGATACAACGACTTGAAGAAAAAAGACCCTGTTGTT
gctgaagaaaaaatgaaacgtAAGGAGAGTTATGATTTGTGAGAATTTGC
TTCATGCACTGTGTTTAGATTACTTTATTTACTGTGTCCACTAGCAAGGA
TGAAACCTACAACATTTTAATGAGTTTTCTTTGTATTCTTTTCAGGAACC
TTGGAAGTTTTCCGACAAACTCTTGCTGCCCTTGAACAAGAGTCCAAGGA
CGAGAAAGAACGATTGAGAGTCGAACATGCTGACTGTATCAACACCCAAA
TCTCCAAGGACAAGAGAGATGCCATGATCAACTATTTGGCCTCCATCCAA
AAGGAACCTGCCAATGCTGACGAAATCTTGGGAGCTGTCCGCAAATTCAT
CCAAGTCTGCGAACACGACAGAGTCCACAGCCTCCGACACTTTGAACATG
TTCGCCGACGAAATGCAAGCGAAGCCGATTCCATCCGATCTGAATTATTG
CAACACTTAAAGGGATTGAACAAAGTTGTCAATGAAAGCATGGCCCTCTT
GAACTACTTGCCAACTATTGCCAAGAAATTCGGACTCACTGGAAACACTG
CTGTTTTGAAACCAAAAGTGAGTGTTGTTTTTTCTTGGGAAATTTTTGTA
GGAATTGAGGATGATGAAAAGATTTCTGAGTGTATTAAGAGAAAGGAGAA
CGTCCCTACTTTGTATTTTAAAGTTTGTgttttttagaaaactttttaac
acctttttgttcgtttttgaagaattttagtGTGAATTCATGTGTTATTT
TAATGTTGTTTATATCTCTACAGACTGAATTACCAGAAATCAAGCACGAA
GACCATGTCCATGAACGTGTCAAAGAAATCCTTGAAAACAACAAACACCT
TGAGGTACATTTTCTAATCGTGATAAGCTTTTTTATCACCTTTTTCTGGC
ATTTAGATACACCtcagaaattttaaaacttttcgtTAAATGGTATAAGG
AGAAAAAATTAGCTTTCCAAGCTTTTTCTGATTCgagaatttttaatttc
ttactAAAATTATCTGCTTGGATTCCTTGAATTTTTAATCCATGACTTAA
AAATTAATCGATTTTTTGACGAGAGGTTATAACCCCTAATTTATACTCTG
TTCACTCCTCAAAACGTCACGACAAGGTCAAGTTTTGTAAGAATTTATGc
aatttagaattttcaaaattcatgatGGAGATTTCTCTTAATCCTAGACT
TTTCCTTCCGTAAAAAGCTTCTTGATGAATTCAATTCTTAGAACCAATGA
AGAGCTAGTATTTCGATTTTCTATCCTTTTCACTTTGTTCTTGGTTGCAC
ACACTAAACTGTGTAATTCTTAAAGTCTAAAATTTAATCATGGTTCGTGT
GTCCATTTTTTAGGAAGATGATGATGAAGAcgacgatgatgatgatgaag
aatCTATTTTCGTCACATCCAAACCCGTCCCATTGAAGAAATTATTGGCC
GctgccaaaatcaaaaatacCGTCGAGAAAACACCCACTATCAAATCTTT
GGGTAAAATGGCTGCCAAGATTAAAAACGAATATGATGACTCCGATGATG
AGGATGATGATAATGACATCATTGCCGATGCTTTCCCAGTCCCACAAAAA
GACGCACCCACCCACCACAAAGGAAAGAAGGAACATCACCGATCACCGAT
GGTTATTAACATCATCTTGGGATTGTGTTGTGGTATCTTGGTCGTCATGT
TGATTGTCGTTATCGTCATGGTCGTCCAACGCCGACGTGTCGCCCACACT
CGAGTCGTCATTGCCGAAAATAATGATGACCGTGAGCATTTGATTCAAAT
gcaaaaaagtggatttgaaaatccAACCTACAAATTCTTTTATTattaaa
tttttccttttttaataataattgGATTTCGAATGATGTATGTGATTTAA
GAACAAACACGACAtgagaaagaaattttatttgttacttattttggtta
ttttggtaaaaaaaatctACATATGTAACCAACCTTGGAAAGATTTAGTG
AGAGAAAATGTAGatagattgaaaaaaaagcaCATTTTCTGTAAGAAAAT
TGGTGTTGTCATCACACAAAGTATCGTTGTTGCCACTACTattatttttt
gtagaaaaaaatttttgtaacaATGAGATCGAATTATAGATGAGTTGTAG
GTCGACTTGGCTCACTCGATTTTTCGATTACTTTTAAAGTTTCTGAAATT
CCCAGTTCGCAAACAGGATTTTGTATCTTTTATCCCTCTTTTGTTGtaca
gaaaattgaaaattccccTTGGAATTCTTTCTCAATACAATTCACTTTAA
GAAGGTCTCttgtttttaccattttactttattaaaagaaaaatatacct
TCGTTGTTCTAagtgtaaattttttgattttttatatgatgtaaatttta
agtattttttttgtGCCCTTTATTATGCCATGCTACCGTTCCACATAACT
ACGATCTGACGACATTGACATTTTGACCAAGACTTAAATAGAATTGACTT
TCTGACGAAAACATGACTTCGCGATTTAGTACCTGACTTACAAGACAAGA
CTAATTAAGACTGTTACTTCAATGAAACACAGACCTGTGAGGACTGTTTT
TTTAACTACAATACTTTTGAGACAGGACAGACAAAAAAACTTCCTTCGAC
TTCTATCGTTaccacaaagaaaaaaagatttgaggGGAGGTATCAGGAGG
CATCTCAAACAACTAAAAAGGAGGTCTAGATAAAGAAAtaggaatttcat
tttcatttgatgCATCAATATCTATCCATCAAACGACGACAAGATAATAA
CAAAACATCAACAttctttttatagtttttttatatagagagaaaatgtt
tttgtcaAGTTAATTAAAAAGCTTTTCTTTTAAGACGCATTTCCTGACCC
CATGTTTCGAAATAACCTCTTTGTAAAGACGAAATACCGACCGACATACA
CGATAACAAAAGAACTACtctcttttttattagaactctattttacaaga
aaaatctggcTCTAAATCACCACAAAATTGGAAGACAAAAGCTTTTTGTT
GACTTTCATAAAGTATAAATTTGAAGTCTCCCAACctcaattttggtgaa
aaagaaatatgaCCAATCTCCTGAAGCTTGATTCTTTTAGAGAAAGACCT
AACGACAGAACAAAAGACATTGACTGCacaaaacaatataatattccACC
CACACCTCCTGATTACTTTAAACTTTGTTCCTTCACTAATTATGTTACAC
ATCATATTACCCATCATctcttgttttttattattaattattttggtatt
ttataaTAAATGTTTTAAAAGATGTCTTTTTTAAATTGGAGGATAGGTAC
TGTAATGTGAAATTGGTCTATAATAAGGTAACTATAGTAATCAAACGCCT
TTGAACTTAATTGGAAtgttggttctttcaaaataTAACCAGCCTACACC
TTCCTTCATTTTTGAAAAGCATTCTactgtctttttttttttaattctta
tttattttgttaataACAGCTCCTTTTTGCTCTTCTAAGATATCCTGCCA
GACATCCTGGAAATTCAGCATGATTTCTCGGTGATGTTCTCATAGTACAA
TACCTAAGATCTAAAATCTTCGTGATATTCGttgtaaaattcaaatttac
gtcactttttctacaaaatgtcaatttttatcaGCTTTTTTCGAGCATTT
GTAATGACGTTTTTAACTAGTGAAAAAGTGTCGTCTGTTATATTCAGGCG
AATATCACGTGTTCTAGTCTTTTACAGGAATCTTAACAAACAACTGACCC
taataattttacattttaattttGCTTTGAATCTGATTAACGACTgtcat
ttcatttttaatatATATAATGATTCCTTTTGTTCAAGATTTTTCGAAAG
TTTGAAACACCTGGTAAACACACCTACCTACTATGATAATAAGTTCGGTA
TCTCAATTTTGTCATATTTGGCACTCAACTGACATTAATCATTATGTCAT
AAATTGCGATTCATTATGACACATAATGACGTTTCAGTCTTGATTATGAC
GTAAGAGATACCCTACTAATTATCGCCAGTAGGAGTTTGTGTTTGTCTAT
TCGACTAATTtaataattgataaaataaaaaggagctggatttttttctt
aatccgatttttgtcaattttctttgtctttctGAATATCCCTGTCTTTT
CGTATACACCCAATGTGTTCATAtggatggagtttttacaagattttatt
ttcatttatttttctttagttctttTAACTCGTCCATCCTTTGAAAGGCT
AGCTTTCTCTCGTATGATAggagaattgttttttcaaaccgTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033950XLOC_033950Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053791-exon-scaffold_234-1491911889:109419..110142TCONS_00053791-exon-scaffold_234-1491911889:109419..110142Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1510915933:109419..110142TCONS_00053791-exon-scaffold_234-1510915933:109419..110142Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1575043694:109419..110142TCONS_00053791-exon-scaffold_234-1575043694:109419..110142Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1491911889:110365..110987TCONS_00053791-exon-scaffold_234-1491911889:110365..110987Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1510915933:110365..110987TCONS_00053791-exon-scaffold_234-1510915933:110365..110987Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1575043694:110365..110987TCONS_00053791-exon-scaffold_234-1575043694:110365..110987Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1491911889:111114..111535TCONS_00053791-exon-scaffold_234-1491911889:111114..111535Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1510915933:111114..111535TCONS_00053791-exon-scaffold_234-1510915933:111114..111535Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1575043694:111114..111535TCONS_00053791-exon-scaffold_234-1575043694:111114..111535Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1491911889:111742..111822TCONS_00053791-exon-scaffold_234-1491911889:111742..111822Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1510915933:111742..111822TCONS_00053791-exon-scaffold_234-1510915933:111742..111822Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1575043694:111742..111822TCONS_00053791-exon-scaffold_234-1575043694:111742..111822Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1491911889:112332..113774TCONS_00053791-exon-scaffold_234-1491911889:112332..113774Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1510915933:112332..113774TCONS_00053791-exon-scaffold_234-1510915933:112332..113774Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1575043694:112332..113774TCONS_00053791-exon-scaffold_234-1575043694:112332..113774Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1491911889:114153..115311TCONS_00053791-exon-scaffold_234-1491911889:114153..115311Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1510915933:114153..115311TCONS_00053791-exon-scaffold_234-1510915933:114153..115311Clytia hemisphaericaexon
TCONS_00053791-exon-scaffold_234-1575043694:114153..115311TCONS_00053791-exon-scaffold_234-1575043694:114153..115311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:109419..115311 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
95.5837	102.893	144.16	139.657	52.196	27.6603	9.18711	6.74686	78.1608	144.829	66.6856	88.0514	244.423	204.861	158.557	178.288	163.875	243.202	184.289	301.211	140.834	148.659	82.1458	115.739	22.8893	25.0866	943.438	952.418	130.265	138.707
Blast
[Close]
BLAST of TCONS_00053791 vs. Swiss-Prot (Human)
Match: APLP1 (Amyloid-like protein 1 OS=Homo sapiens GN=APLP1 PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 1.850e-50
Identity = 130/459 (28.32%), Postives = 218/459 (47.49%), Query Frame = 3 
Query:  609 RVAMNCDHVPFYIDLKTGSWVEDSEGLEICDHNKEVVKKYCQKMYPKLNITNIVEANTPQTFNNWCRSGQS-QCTEAK-EVVPYRCLVNEYEADALMVPDGCKFDHIHDPNQCLSHDQWKEKASKKCDSQYKMKLKDYGILLSCGTDVFTGVEFVCCPEKMPETKPAPSAAT---------------------------PKITKDVF----QA---------------AVAKFLQYLPSVTKGCD-----------RSTYLTKQASMGEHHQSQIAAVVDEWDNAEKRYNDLKKKDPVVAEEKMKRTL-EVFRQTLAALEQESKDEKERLRVEHADCINTQISKDKRDAMINYLASIQKEPANADEILGAVRKFIQVCEHDRVHSLRHFEHVRRRNASEADSIRSELLQHLKGLNKVVNESMALLNYLPTIAKKFGLTGNTAVLKPKTELPEIKHEDHV 1805
            +VA  C  +  + DL+TG W  D +    C  + + V +YC++MYP+L I  + +A        WC   +S  C     +VVP+RCL  E+ ++AL+VP+GC+F H    +QC S  +  ++A + C SQ  + L   G+LL CG+D F GVE+VCCP   P   P PS                              P+   D F    QA               AV   +   P  T G D              +L  +  + E    QI  V+ EW  A+ +  +L K D        ++ L E F+  L  LE++   E++RL   HA  +   I+  +R A+  +LA++Q +P  A+ +L A+R++++  + ++ H+LRH++HV   +  +A  +R ++  HL+ + + VN+S+ LL+  P +A++         L+P+ +  E+ H +H+
Sbjct:   55 QVAGLCGRLTLHRDLRTGRWEPDPQRSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAIPMERWCGGSRSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQEACSSQ-GLILHGSGMLLPCGSDRFRGVEYVCCP---PPGTPDPSGTAVGDPSTRSWPPGSRVEGAEDEEEEESFPQPVDDYFVEPPQAEEEEETVPPPSSHTLAVVGKVTPTPRPTDGVDIYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKAD--------RQALNEHFQSILQTLEEQVSGERQRLVETHATRVIALINDQRRAALEGFLAALQADPPQAERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVHTHLQVIEERVNQSLGLLDQNPHLAQE---------LRPQIQ--ELLHSEHL 490
The following BLAST results are available for this feature:
BLAST of TCONS_00053791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APLP11.850e-5028.32Amyloid-like protein 1 OS=Homo sapiens GN=APLP1 PE... [more]
back to top