TCONS_00053796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053796
Unique NameTCONS_00053796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053796 ID=TCONS_00053796|Name=TCONS_00053796|organism=Clytia hemisphaerica|type=transcript|length=265bp
TCCTGATATGTTTACAGAGCCTTTTGATAAGAAAATCATCACCCTTCCCG
TCACATCTTTACAATACAACCAAAGCGATAACCAGCTCATTGAATCAATC
ATGCATAATGTTGTACAAGTCCATTACGTCTCTAACGCAAAATACAAATG
TATGCATTCTGATAATGGTTGGCTTAATCTAACAGCTTTATCAGCCGACA
TAAACCAGCTGCATTATTTAAGAATCAACGATTTAAAATCTATCAAACCA
AAGATGTTATGTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_234:148267..149290+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053796 ID=TCONS_00053796|Name=TCONS_00053796|organism=Clytia hemisphaerica|type=transcript|length=1024bp|location=Sequence derived from alignment at scaffold_234:148267..149290+ (Clytia hemisphaerica)
TCCTGATATGTTTACAGAGCCTTGTAAGTTTATTCTTCGTTTATTCATTG
GGACATTACATTGAATTTCCCATTATTGaacaatatattttcttttgctG
TCTGCTTGATCTGTAAACACTATATCaacaaaaaaatagatttctagATA
CACAGGGTAGAACCTGGCAAAAAACTGACTCTTACAGTATATTCTTATGT
AATCAAATCTTACACCCTCCGCACTATATTGCTTCACCTTTTTCGATGTC
CAACAAACTCATCAACCCTATATACATTGCTCTTTAGGGATTAGTAAAAG
CCGACCTGTTCAAGGACCGAAGAAtttttactttaatgggataaactttc
gcgggattaaatttcgcgggattaaatttcgcggatttcgcggatttggg
tgtcatccaatggaaatttggaagagCCTCATCAGCGAAATATTTCTaag
caaaaatcaaaatttgtcaaataaatactatttgaatggttacttgcatc
aaagaggtgcaaataatgtgtatttctgAAAATCAATTCAACCAActtgc
atgatttgacagtaaaagtcacaaaatcgtgaaaatattgccacccaata
gtgccaccgcgaaatttaatccctgcaaaagtttatcccattaaagtaac
agTTCGTCGGTCCTTGAACAGGTCGGTTTTTAATAATCTCTAAAGAGAAA
TGTATGTTAgataaattaatgaaaaaatgtGTCTCACCcctcaaattttc
atcaaagaACATAATCTGTTTCTATTTTTCAGTTGATAAGAAAATCATCA
CCCTTCCCGTCACATCTTTACAATACAACCAAAGCGATAACCAGCTCATT
GAATCAATCATGCATAATGTTGTACAAGTCCATTACGTCTCTAACGCAAA
ATACAAATGTATGCATTCTGATAATGGTTGGCTTAATCTAACAGCTTTAT
CAGCCGACATAAACCAGCTGCATTATTTAAGAATCAACGATTTAAAATCT
ATCAAACCAAAGATGTTATGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033952XLOC_033952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053796-exon-scaffold_234-1491911889:148267..148289TCONS_00053796-exon-scaffold_234-1491911889:148267..148289Clytia hemisphaericaexon
TCONS_00053796-exon-scaffold_234-1510915933:148267..148289TCONS_00053796-exon-scaffold_234-1510915933:148267..148289Clytia hemisphaericaexon
TCONS_00053796-exon-scaffold_234-1575043694:148267..148289TCONS_00053796-exon-scaffold_234-1575043694:148267..148289Clytia hemisphaericaexon
TCONS_00053796-exon-scaffold_234-1491911889:149049..149290TCONS_00053796-exon-scaffold_234-1491911889:149049..149290Clytia hemisphaericaexon
TCONS_00053796-exon-scaffold_234-1510915933:149049..149290TCONS_00053796-exon-scaffold_234-1510915933:149049..149290Clytia hemisphaericaexon
TCONS_00053796-exon-scaffold_234-1575043694:149049..149290TCONS_00053796-exon-scaffold_234-1575043694:149049..149290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:148267..149290 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.609232	0	0.689804	0	0.821584	0	0	0	0	0	4.32064	0.811491	0	0	0	0.371249	0	0	0	0	0	0	0.698534	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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