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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053797 ID=TCONS_00053797|Name=TCONS_00053797|organism=Clytia hemisphaerica|type=transcript|length=549bp
GATGATCCTGCAAAAGTTCCAGCTGATTTCTTCCGTGGGGTGGATTTCTC
ACTCTCTGCACATGGCAAATGGTTGGAAGACTCTCATTTGACATTTGTTA
GAGCGAACTGTCATGATAGCCAAGGGCCGATGAAGGAGAAACTCAAGACT
GTATGGAAACGCATGCGCGCTGCAATACCAAAGGATGATTCGAGTATACC
TGACAAACTAGTAGAATCAAAAGGAGAAGTTTCACCCACCAAACTTCATC
ATACATGTCCGTCAGGGCAATTCCGACTCATCAAGTTCAATTTCAAGTAC
CCACAAACACATAATAATCATTATTATGTAACTttatcctgggtggaaaa
tgaaGATGGCACATACACTCGATATGATTGCACTGCTTTCATGTTGATTG
CTGATTTcgtcaagatttttgaaaaggcTGGAGTTTAAGGTCATCAATAC
AGCCTTTAGACCTAGCACTATGTATTGCTGGGAAGTGGCATGGTCCGAAT
TTCTCTGGAttaattttgcttcatttcacgTTAGAATTAATGAACTCTT Run BLAST on NCBI protein sequence of TCONS_00053797-protein >TCONS_00053797-protein ID=TCONS_00053797-protein|Name=TCONS_00053797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
DDPAKVPADFFRGVDFSLSAHGKWLEDSHLTFVRANCHDSQGPMKEKLKT
VWKRMRAAIPKDDSSIPDKLVESKGEVSPTKLHHTCPSGQFRLIKFNFKY
PQTHNNHYYVTLSWVENEDGTYTRYDCTAFMLIADFVKIFEKAGV Run BLAST on NCBI transcript from alignment at scaffold_234:169946..170940+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053797 ID=TCONS_00053797|Name=TCONS_00053797|organism=Clytia hemisphaerica|type=transcript|length=995bp|location=Sequence derived from alignment at scaffold_234:169946..170940+ (Clytia hemisphaerica)
GATGATCCTGCAAAAGTTCCAGCTGATTTCTTCCGTGGGGTGGATTTCTC
ACTCTCTGCACATGGCAAATGGTTGGAAGACTCTCATTTGACATTTGTTA
GAGCGAACTGTCATGATAGCCAAGTAAGTACTGAATAATTTTTATCGGAA
TCATTGAATGGCTATTGTGCTCGGATAAATTAAGAAGGGCCTTACGATAA
AGTTAACTCAATAATTAGCTTTGTCGGGTTGTCAAGAGAACGACTTTGTG
ATACAAATTTGTTAAATCTTACATGCCCTTTAGCTATTCAAAATCTGTTT
GGAGTTAGGCGTTTTAGATTCATAAAATGCATTTctatgatttgattttg
atgccCAGTTAGTTGTTTCAACGCCCATCTGATGTCCATTACGTCCATAT
AACCTTAGATGAACGTTGGAATAACGTTGTATGCAGCCAATGGAGAGCTG
TTGTAGGAGTGAACAATGCAATGGTCATGCCTCGTTTTTTTTATGATATC
CCAACTTTAAAAAGTGTCTGTTGAATTAAAATGTGATGATCTTTAATATA
CCTGTCTTTTATATTCCAGGGGCCGATGAAGGAGAAACTCAAGACTGTAT
GGAAACGCATGCGCGCTGCAATACCAAAGGATGATTCGAGTATACCTGAC
AAACTAGTAGAATCAAAAGGAGAAGTTTCACCCACCAAACTTCATCATAC
ATGTCCGTCAGGGCAATTCCGACTCATCAAGTTCAATTTCAAGTACCCAC
AAACACATAATAATCATTATTATGTAACTttatcctgggtggaaaatgaa
GATGGCACATACACTCGATATGATTGCACTGCTTTCATGTTGATTGCTGA
TTTcgtcaagatttttgaaaaggcTGGAGTTTAAGGTCATCAATACAGCC
TTTAGACCTAGCACTATGTATTGCTGGGAAGTGGCATGGTCCGAATTTCT
CTGGAttaattttgcttcatttcacgTTAGAATTAATGAACTCTT Coding sequence (CDS) from alignment at scaffold_234:169946..170940+ >TCONS_00053797 ID=TCONS_00053797|Name=TCONS_00053797|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_234:169946..170940+ (Clytia hemisphaerica)
GATGATCCTGCAAAAGTTCCAGCTGATTTCTTCCGTGGGGTGGATTTCTC
ACTCTCTGCACATGGCAAATGGTTGGAAGACTCTCATTTGACATTTGTTA
GAGCGAACTGTCATGATAGCCAAGGGCCGATGAAGGAGAAACTCAAGACT
GTATGGAAACGCATGCGCGCTGCAATACCAAAGGATGATTCGAGTATACC
TGACAAACTAGTAGAATCAAAAGGAGAAGTTTCACCCACCAAACTTCATC
ATACATGTCCGTCAGGGCAATTCCGACTCATCAAGTTCAATTTCAAGTAC
CCACAAACACATAATAATCATTATTATGTAACTttatcctgggtggaaaa
tgaaGATGGCACATACACTCGATATGATTGCACTGCTTTCATGTTGATTG
CTGATTTcgtcaagatttttgaaaaggcTGGAGTTTAAGATGATCCTGCA
AAAGTTCCAGCTGATTTCTTCCGTGGGGTGGATTTCTCACTCTCTGCACA
TGGCAAATGGTTGGAAGACTCTCATTTGACATTTGTTAGAGCGAACTGTC
ATGATAGCCAAGGGCCGATGAAGGAGAAACTCAAGACTGTATGGAAACGC
ATGCGCGCTGCAATACCAAAGGATGATTCGAGTATACCTGACAAACTAGT
AGAATCAAAAGGAGAAGTTTCACCCACCAAACTTCATCATACATGTCCGT
CAGGGCAATTCCGACTCATCAAGTTCAATTTCAAGTACCCACAAACACAT
AATAATCATTATTATGTAACTttatcctgggtggaaaatgaaGATGGCAC
ATACACTCGATATGATTGCACTGCTTTCATGTTGATTGCTGATTTcgtca
agatttttgaaaaggcTGGAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053797-exon-scaffold_234-1491911889:169946..170068 | TCONS_00053797-exon-scaffold_234-1491911889:169946..170068 | Clytia hemisphaerica | exon |
| TCONS_00053797-exon-scaffold_234-1510915933:169946..170068 | TCONS_00053797-exon-scaffold_234-1510915933:169946..170068 | Clytia hemisphaerica | exon |
| TCONS_00053797-exon-scaffold_234-1575043694:169946..170068 | TCONS_00053797-exon-scaffold_234-1575043694:169946..170068 | Clytia hemisphaerica | exon |
| TCONS_00053797-exon-scaffold_234-1491911889:170515..170940 | TCONS_00053797-exon-scaffold_234-1491911889:170515..170940 | Clytia hemisphaerica | exon |
| TCONS_00053797-exon-scaffold_234-1510915933:170515..170940 | TCONS_00053797-exon-scaffold_234-1510915933:170515..170940 | Clytia hemisphaerica | exon |
| TCONS_00053797-exon-scaffold_234-1575043694:170515..170940 | TCONS_00053797-exon-scaffold_234-1575043694:170515..170940 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:169946..170940 + |
Blast
The following BLAST results are available for this feature:
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