TCONS_00053800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053800
Unique NameTCONS_00053800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length152

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053800 ID=TCONS_00053800|Name=TCONS_00053800|organism=Clytia hemisphaerica|type=transcript|length=152bp
CTTTTATGTCATATGATTTATATTATGAACCAATCGGACTCGTACATCAC
TTGGGTGAACAGTCAactgggtaaacgagacaaaagtCGTCACGTGAAAG
ATCTTTCCAAAGATATGAGGGATGGTGTGGTCTTCTTGCAGCTGGTTGAA
GT
Run BLAST on NCBI

transcript from alignment at scaffold_234:187902..188457+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053800 ID=TCONS_00053800|Name=TCONS_00053800|organism=Clytia hemisphaerica|type=transcript|length=556bp|location=Sequence derived from alignment at scaffold_234:187902..188457+ (Clytia hemisphaerica)
CTTTTATGTCATATGATTTATGTAAGCCAAATtgtccatttttatgaaaa
ctGGTAAAGAGGTTGAATATCATATTTTCCATGAATATGAACTGATTATA
TGCGTTTTACAGTAATATCGACTTTCTGTCTTCTCTTTCCTCATTTTTGA
CGAAAGTCGGCAGAAAATCgactgtctaaagtcaatgcgataccttcttt
tgacgtcaatgcaatgaattgttgtatctttttcaagcaaagatttgaaA
CTGCCGACTTTCCGTGGATCTTCTCCCGTCTCACACATTGAAAGGAGTTT
CCTTTACAACGCCATACTCTCTAGGCTAGACTTTCCATCGCTTAACTTCA
TGAcagataaaattttttgattggcttaaattTATACACGGTTCTCTATA
TCTCTTTTTTGTCTCTTTCATTCAGATTATGAACCAATCGGACTCGTACA
TCACTTGGGTGAACAGTCAactgggtaaacgagacaaaagtCGTCACGTG
AAAGATCTTTCCAAAGATATGAGGGATGGTGTGGTCTTCTTGCAGCTGGT
TGAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033951XLOC_033951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053800-exon-scaffold_234-1491911889:187902..187922TCONS_00053800-exon-scaffold_234-1491911889:187902..187922Clytia hemisphaericaexon
TCONS_00053800-exon-scaffold_234-1510915933:187902..187922TCONS_00053800-exon-scaffold_234-1510915933:187902..187922Clytia hemisphaericaexon
TCONS_00053800-exon-scaffold_234-1575043694:187902..187922TCONS_00053800-exon-scaffold_234-1575043694:187902..187922Clytia hemisphaericaexon
TCONS_00053800-exon-scaffold_234-1491911889:188327..188457TCONS_00053800-exon-scaffold_234-1491911889:188327..188457Clytia hemisphaericaexon
TCONS_00053800-exon-scaffold_234-1510915933:188327..188457TCONS_00053800-exon-scaffold_234-1510915933:188327..188457Clytia hemisphaericaexon
TCONS_00053800-exon-scaffold_234-1575043694:188327..188457TCONS_00053800-exon-scaffold_234-1575043694:188327..188457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:187902..188457 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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