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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053803 ID=TCONS_00053803|Name=TCONS_00053803|organism=Clytia hemisphaerica|type=transcript|length=2897bp
tAGAAGtgtatataaaaatttgatggaaaaaaaagatttgaaacaAGGAT
AAGAGCAGATTCACAAGGCTTACACAGTGTTTCATCGTATACAGCTGAcg
taaaaaaaatcacaaatcaaTCTTGTTGCTGTTGTGAGTGAGATCACTAG
GTATTGAGGGAATATTGTTTGTGCGTTGGTtcgaagaaagaaaaaggaat
atTTAAATCCTTTCATTATGTCGTTCTTTCAGCAAGTTTTAAATTCGGAC
AAATCAAAGCAAGAGGTTATCCAACGTGAggagcaaaaacaaaaacataa
gaAAGAGCGAGACAATTTgtacgAAGATCAGAACGAGGATGAATGTATGA
GAGCCTACCAACGAGAAATGGCCAAgtcacaaaacaaaaaacaaaacaac
aagcCGTCTAATAATGGCTCAACCACAAATACAAATTCAACGAATGGCTG
ATAAAATGATATTTAAAACATACAGTTTCATATATGAATTCTTATGAAAG
TGCGACAGGTTATATAGAATCCCTCTAGACTCGTTACCTCATTCGAGCTT
GAattattgaatttattttttatggaaaGTTTAAAACTCTAGCATTGCAT
AAAATTGTGTTTAAGTGACTGCCAATCGAACtactttttgaaatcttttt
attCGCCCTTCCAATTCTTAGAGCATAATAGGcttacaaattttcatttc
aataagtttgaaaaacaattcaaaattatTGACTTCACTTTAAAATTGCA
TTCGGAGCTCATAAGTGTTATTCGAGTTCACAAATTTATAAAGGCCCCTT
TTAAATCAAGGAATTCTGACCTGACTCGGTTCTTTTAATCAAGCCTATTT
ATTCataacccctcaaaatttaaggaTGTTATATTATTGTATAATTTTTG
TTGTAACCTTATACTTCAATTATTTCAAAACCATTTACTGTAAATAACAT
ACACTGctcttgaaattaaattttacaaACTTGAAAACACTTTCATCTGC
CTTTGAAATGTATTGTTCCCAATTCAACATGATGCAGAAGATTATAAAAC
ATATGTACAGtaaacattaaaattttaccAGCAAAATACACCAATAAAAA
ACAGTAGAAATATAACCAAATAATTTGAGACAATTTATCATTTATGTAAC
TAAGGATAATCATTATATCAATAGTCCCTTCTCAGAATACCGTGGAAGGT
TTTTCAGCCctgcaaaatcaaaaaatccagtggggatggttttggagtgc
aatttgttccattaaatttcaaaaGGGGTTagttcaaagtcaatttccca
gtggggctgaaattccggggtgttttcccaccggggacaaaattttggcc
gAACTGTCCACTGCCGAACTGTCCACTGCCGAACTGTCCACTGCCGAACA
GTGGGGCTTGAGCCTCAGCGAGGCTGTGGCACAGGGGTGTGAAGGTTGTG
CAGATGAATATCTCGACTGTACCCTCGAACAAAATGTTCCTCGGAAGTTC
GAAATAGAGTGATTCAACTATCGACTTTTCCATTACGagattctattatt
cgaattaaTTCTAGGTGTCATTCAAGGTAAAATAATCAATAAATAAAATG
CTTTCTTTAAAATTGGCATATCGCTGCATCTTTAACAAATAGCACATCCA
CGTGAATTCGAATTAGCGTAAGCCAACTGTAGAAGTGTTGCAGGCCCCTT
TAAAACACAAAAGTAAGAATGAAGAAAAACCTCTTACCAACAAGTTTGAA
CCAACCagaaacaatgaaaaaatcaacattCGAAATCATCCGTAATAGAG
TCCTTATTTTCAACGTACTTATCGGGCGGTAATAAGGCGTCGGATCCACG
CCCAAAACTTGCGCCCTCCTGTTCTGCCAGTTCTAAAACACCACCCCAGA
GGCGGTCAGTCCTTAACAATCGGTGACAACCAACGATAATTAAATGATGT
TTAGCACGAGACAGCGCTACATTGGTGCGCCGCGGGCAGTTTATAAATCC
GATAAATTTGGTTCGTACGCACGACAAAATAATAACGTCTTTTTCTGCAC
CTTGAAAAGCATCAACTGTTGAAATTTGAACACCTTTTAACTCCATTGCC
GATAGAACTCCTGATTCTTGTAGTTGGTTGGAAATTCGTTTCACCTGAGC
TTTATACTGGGTTATGATTCCAACTTGGGTCGGTTCAAGACCTTCTGCTA
AGATCGCGTTAACCAGTTTTACACAATACTGTACTTCCTTAACGTTGAAT
AAACTGCCATCGGAGGCTGTTGCTTCCTTTCCGTCCGAAATATCAGCAAT
TGATACTGGACCTAACCAATCAAGTAACGGGCCTCGATCATCGGTCGAAA
CTCCATCCGTAAGCATTCCTTTATAAAACATCTTACTNTGGCCCCGATCA
TCAGTCGAAACTCCATCCGTAAGCATTCCTTTATAAAACATCTTACTGCA
TAGCAAACTGATCGCTGGGTGGCATCGGTATTGGCATCTCAAAATGATAG
GATCTAAGCCAGCTTTCTGCAATCGCTCGAATAAAGTCACTTCCAAACCT
TCTGGATGTGCACTTTCTGACCCTTGAATAGTTGGACTGAGCTGGTTAGG
ATCACCAACCAGCACTAGCCTTTGACAATGGAAACGAGCAATTGGCACCA
TGGATAGAGGCTCGATCATTTGACTGCATTCATCCAGAAGATGTACTTGG
AATGTCAGATTCTTCAGTAAAGGAAACGAGCATGCAGCACACGTCACACC
AACGACTNAAAGATGTACTTGGAATGTAAGATTCTTCAGTAAAGGAAACG
AGCATGCAGCACACGTCACACCAACGACTCGGACTCGATTCAAACGTGTT
CGATTGGCACCCATTTTGTGAGCTTCGATTGCTTTCTTAACATAATC Run BLAST on NCBI transcript from alignment at scaffold_234:241739..248263+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053803 ID=TCONS_00053803|Name=TCONS_00053803|organism=Clytia hemisphaerica|type=transcript|length=6525bp|location=Sequence derived from alignment at scaffold_234:241739..248263+ (Clytia hemisphaerica)
tAGAAGtgtatataaaaatttgatggaaaaaaaagatttgaaacaAGGAT
AAGAGCAGATTCACAAGGCTTACACAGTGTTTCATCGTATACAGCTGAcg
taaaaaaaatcacaaatcaaTCTTGTTGCTGTTGTGAGTGAGATCACTAG
GTATTGAGGGAATATTGTTTGTGCGTTGGTtcgaagaaagaaaaaggaat
atTTAAATCCTTTCATTATGTCGTTCTTTCAGCAAGTTTTAAATTCGGTA
AGTCATGGGTATTTATGATATTTAAGGAGGACACCATTTATAGATTATGA
ACGTGTCTGTCAATTTTGAGACGACAAGACAGGTCAGGTTGAAGTAGATG
TCATCAATATATAAAATTATACAtatgaaagttgtttttatgtCTTAAGG
GTGGAATAAAGAAAGATGTGTGGCTAACTGGAGAAGCTACAACAATGTGT
CATACTAACCCTTTCCGTGCAGACATGCGATatttcgacctatttgccgg
aaatttataattttttactaGATTTTTCCATCTGAcggtttgaaataaaa
aaaaaagaaaatttggaaacttttcgatattgaaaaaaataactattcta
caATTTTTAACTCAAAATCAAAGTCTTTGGCTGATACTTCTTATCTTACt
cagaaaatgaagtgaaaatcgCTACGTTTTGCCAAtatcggcatatgccg
acatccgGCAAATAGGTCGAGGGTGTAAAAAAAGGCACAGCAGTTAAAGG
GAAATAATACTTTCAAGGGGATTTTGATGACATGGGGCGATTTTCTTACA
TCATTAAAAGCTAATAGTAGATAATCAAAGGGTGGTATAAATCACAAATC
ACAGAAAATGTACACTTTAGATAATCTAAGCATGacaaacgatagccctt
gacccaataagcataaatatgaaCTAGAATGTTAAGCAACCCCAGCACTA
ACccaaaaattggagttgcttataaaaaacgtgtacgtgtTTCTGGtaaa
atgtaaatcaaaataCAAATCGCTTGAATAAAGGAAGACTTTTTTCGTGT
AGGCAAAATGTATAATAAAATGCAACGTCGagtcaattttctttctttca
gcATGGAGAATGGAAAGTCCGCAATTTTTCCTGTTTCTCACTAATGAAAC
GTTTCAAGCTTATACAACAAAAAAATTCGagcaatttcaaaaactattct
TTGACATCATAAAAATGAGACTGAAAGAGaacagatttttttttgcaaaa
ttcagCAAAACGANtactttatataaaaatgtgtctgctttttttgggac
acactgtagttctataattttataagaaattggAGTGGCTTTTGGTGGTA
TCAGGGTTTAAACAAGAATgcatttaaataaaaaaacattactGTTAATT
TCAGTATAAACTTTTCATGCAATAATGAAAACCTTAATTTTTAAACAATC
AAGTTGCTCGTTTATTCTGGTACTTTTGTGCTTTTTTATTGTTTAGGTAC
ATATCTTAGATTTTTATAGCCTTGTTTGACTAATTTGACCCATGATGATA
TATCCAAATTAAGTCTTCTCAGACCACGTTCtagtctggagaccatactc
tgttacaaaaatatttctatcctgtcaaaatcccaacaacttcactgaaa
tacagagtatggaattattgaNNNNNNNNNNcccttttagtacactgtac
taactcaatttaatctaaaaaatacaccaccccaccagctatgggccagt
acactgactcgATACCCCCCCtgtttgaagccaacaaatcctaccaaagt
tgcgcggccttgagtagtctggagaccatactctgttacaaaaatatttc
tatcctatcaaaatcccaacaacttcactgaaatacagagtatggaatta
ttgactcaattcaaatcacttcaaatcacaaaagaaaaaaccgttatctt
ttcaaaacaatttaaaagctcgcgccacttcttgaaacaatagagctgtt
tGACGTCACATCGCGCAGAATTGACGTTACAGTTTTTGACATCAAAAAAA
TCCGGGGGTTTTGACGtagatttttgacgtcaaaaaattagaagttgcaa
atttcttaatttttccttACCCTTGTTTATTACACTGCTTCCTGTGTATA
ATGTTTTCAGacataaatttgatatttttgaatcaCTGAATCTGTCCTCT
TTTAAGAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGAGctgtttgacgtcatacttttg
tttatcaaatcataacaataaaatattagccaatcaaattttgcgcTGAT
TCTTACATCTTCAATAATTCCCGGCTACTATGTAAAAACTCTGATATTTT
CTGCTCGAACTAAATGCTATACCTCAAAACCACACGGACATTGTAGCCGG
GTCTCCCAGCTAACCACGTTCACACtctacggttccgtttcgctttaagg
tctgaagacaaatcacggttttactcaaaaaaaatttatgtgcttgttac
atggtACAtgtatttctgattggttcgaatttattgatcagctgtaagtt
gtaaagcaagtaacatcggcataaaatcacgtgaactttttcaagtaatc
acatgttttgactgcattgatataattttgtaaCCCGTGTATTGTTCTAT
TTTTTAGAACATTGATTGCTCTGATAAAATTGCTAAAACTTTCATTTCAA
CAGGACAAATCAAAGCAAGAGGTTATCCAACGTGAggagcaaaaacaaaa
acataagaAAGAGCGAGACAATTTggtacgtttttttataagaacaaacg
ttataagaacataaggcttcgatgatcAAAATACTaggaaaaagaagaac
attttaagactttacaGACTGTAGAACACCGGATTTCTTAAGAAGTTGCA
cataaatacacgtttttttagaGCAAACgtcataagaacataaggcttcg
atgacaaattaagaacaatttaagaacggTTTCCGACTTTGTCgaatcta
aaacacccaatttcttcaGAAGTTGCACATACTCAATACTCATAAAAAGG
TGAAAgtgagaatattttaagaacatttttagctcttaacttaaaaagtt
aagagcatccaaaTACTTCAAACTTTGGACATTCTTATTCAAAAAATGTG
TATAAAAACCAATGTGGGCCAGCCTCAGTTGCTATTAATTTCTTTTCTTA
AGTCTTAAAAGGGGTCATTAAACCTTGATAGCCAATTTATTCTTAGGTTT
TAGCCAAATTTCAACAACTAATATGTTCTCTTGCgaattgttcttataga
aaagtaCACAGACTTAAAGATctttactttaatttttttttcagagaaat
GACGATAGGGGCGCGTCCACTTTTTGTACTGAAATCCCGGGGACGTTTCG
TTTTCCACGAGTGAAGTCTGTCTGGCTtctcaaataactttttttatgag
aaatcttaaaacacacggggaacacaaatttgttcgagttagggaaattt
cgatttatggagtaaggtttataaggtattgttaactgaaaggaccataa
aacttgttcgagttaaggagacatagAGAGAGAAAGcaaaataataaact
tctttcttcttttgactCAGACAAttctaacagaaaacttcctttcatga
agaccaaatttcataacactGCTTGAAAATAAGCCTCCCCCTTCCTTGTT
ATCCcccattttcattaaaatttctgacccccccccaccttctttatttt
ttcgaaaggtgtcatccccccttaagaaagggagggggtccgaactatgg
aggttcgaattaaagagacccgatgtatattttgttttttttttcagtac
gAAGATCAGAACGAGGATGAATGTATGAGAGCCTACCAACGAGAAATGGC
CAAgtcacaaaacaaaaaacaaaacaacaagcCGTCTAATAATGGCTCAA
CCACAAATACAAATTCAACGAATGGCTGATAAAATGATATTTAAAACATA
CAGTTTCATATATGAATTCTTATGAAAGTGCGACAGGTTATATAGAATCC
CTCTAGACTCGTTACCTCATTCGAGCTTGAattattgaatttatttttta
tggaaaGTTTAAAACTCTAGCATTGCATAAAATTGTGTTTAAGTGACTGC
CAATCGAACtactttttgaaatctttttattCGCCCTTCCAATTCTTAGA
GCATAATAGGcttacaaattttcatttcaataagtttgaaaaacaattca
aaattatTGACTTCACTTTAAAATTGCATTCGGAGCTCATAAGTGTTATT
CGAGTTCACAAATTTATAAAGGCCCCTTTTAAATCAAGGAATTCTGACCT
GACTCGGTTCTTTTAATCAAGCCTATTTATTCataacccctcaaaattta
aggaTGTTATATTATTGTATAATTTTTGTTGTAACCTTATACTTCAATTA
TTTCAAAACCATTTACTGTAAATAACATACACTGctcttgaaattaaatt
ttacaaACTTGAAAACACTTTCATCTGCCTTTGAAATGTATTGTTCCCAA
TTCAACATGATGCAGAAGATTATAAAACATATGTACAGtaaacattaaaa
ttttaccAGCAAAATACACCAATAAAAAACAGTAGAAATATAACCAAATA
ATTTGAGACAATTTATCATTTATGTAACTAAGGATAATCATTATATCAAT
AGTCCCTTCTCAGAATACCGTGGAAGGTTTTTCAGCCctgcaaaatcaaa
aaatccagtggggatggttttggagtgcaatttgttccattaaatttcaa
aaGGGGTTagttcaaagtcaatttcccagtggggctgaaattccggggtg
ttttcccaccggggacaaaattttggccgAACTGTCCACTGCCGAACTGT
CCACTGCCGAACTGTCCACTGCCGAACAGTGGGGCTTGAGCCTCAGCGAG
GCTGTGGCACAGGGGTGTGAAGGTTGTGCAGATGAATATCTCGACTGTAC
CCTCGAACAAAATGTTCCTCGGAAGTTCGAAATAGAGTGATTCAACTATC
GACTTTTCCATTACGagattctattattcgaattaaTTCTAGGTGTCATT
CAAGGTAAAATAATCAATAAATAAAATGCTTTCTTTAAAATTGGCATATC
GCTGCATCTTTAACAAATAGCACATCCACGTGAATTCGAATTAGCGTAAG
CCAACTGTAGAAGTGTTGCAGGCCCCTTTAAAACACAAAAGTAAGAATGA
AGAAAAACCTCTTACCAACAAGTTTGAACCAACCagaaacaatgaaaaaa
tcaacattCGAAATCATCCGTAATAGAGTCCTTATTTTCAACGTACTTAT
CGGGCGGTAATAAGGCGTCGGATCCACGCCCAAAACTTGCGCCCTCCTGT
TCTGCCAGTTCTAAAACACCACCCCAGAGGCGGTCAGTCCTTAACAATCG
GTGACAACCAACGATAATTAAATGATGTTTAGCACGAGACAGCGCTACAT
TGGTGCGCCGCGGGCAGTTTATAAATCCGATAAATTTGGTTCGTACGCAC
GACAAAATAATAACGTCTTTTTCTGCACCTTGAAAAGCATCAACTGTTGA
AATTTGAACACCTTTTAACTCCATTGCCGATAGAACTCCTGATTCTTGTA
GTTGGTTGGAAATTCGTTTCACCTGAGCTTTATACTGGGTTATGATTCCA
ACTTGGGTCGGTTCAAGACCTTCTGCTAAGATCGCGTTAACCAGTTTTAC
ACAATACTGTACTTCCTTAACGTTGAATAAACTGCCATCGGAGGCTGTTG
CTTCCTTTCCGTCCGAAATATCAGCAATTGATACTGGACCTAACCAATCA
AGTAACGGGCCTCGATCATCGGTCGAAACTCCATCCGTAAGCATTCCTTT
ATAAAACATCTTACTNTGGCCCCGATCATCAGTCGAAACTCCATCCGTAA
GCATTCCTTTATAAAACATCTTACTGCATAGCAAACTGATCGCTGGGTGG
CATCGGTATTGGCATCTCAAAATGATAGGATCTAAGCCAGCTTTCTGCAA
TCGCTCGAATAAAGTCACTTCCAAACCTTCTGGATGTGCACTTTCTGACC
CTTGAATAGTTGGACTGAGCTGGTTAGGATCACCAACCAGCACTAGCCTT
TGACAATGGAAACGAGCAATTGGCACCATGGATAGAGGCTCGATCATTTG
ACTGCATTCATCCAGAAGATGTACTTGGAATGTCAGATTCTTCAGTAAAG
GAAACGAGCATGCAGCACACGTCACACCAACGACTNAAAGATGTACTTGG
AATGTAAGATTCTTCAGTAAAGGAAACGAGCATGCAGCACACGTCACACC
AACGACTCGGACTCGATTCAAACGTGTTCGATTGGCACCCATTTTGTGAG
CTTCGATTGCTTTCTTAACATAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053803-exon-scaffold_234-1491911889:241739..241985 | TCONS_00053803-exon-scaffold_234-1491911889:241739..241985 | Clytia hemisphaerica | exon |
| TCONS_00053803-exon-scaffold_234-1510915933:241739..241985 | TCONS_00053803-exon-scaffold_234-1510915933:241739..241985 | Clytia hemisphaerica | exon |
| TCONS_00053803-exon-scaffold_234-1575043694:241739..241985 | TCONS_00053803-exon-scaffold_234-1575043694:241739..241985 | Clytia hemisphaerica | exon |
| TCONS_00053803-exon-scaffold_234-1491911889:244542..244613 | TCONS_00053803-exon-scaffold_234-1491911889:244542..244613 | Clytia hemisphaerica | exon |
| TCONS_00053803-exon-scaffold_234-1510915933:244542..244613 | TCONS_00053803-exon-scaffold_234-1510915933:244542..244613 | Clytia hemisphaerica | exon |
| TCONS_00053803-exon-scaffold_234-1575043694:244542..244613 | TCONS_00053803-exon-scaffold_234-1575043694:244542..244613 | Clytia hemisphaerica | exon |
| TCONS_00053803-exon-scaffold_234-1491911889:245686..248263 | TCONS_00053803-exon-scaffold_234-1491911889:245686..248263 | Clytia hemisphaerica | exon |
| TCONS_00053803-exon-scaffold_234-1510915933:245686..248263 | TCONS_00053803-exon-scaffold_234-1510915933:245686..248263 | Clytia hemisphaerica | exon |
| TCONS_00053803-exon-scaffold_234-1575043694:245686..248263 | TCONS_00053803-exon-scaffold_234-1575043694:245686..248263 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:241739..248263 + |
Blast
BLAST of TCONS_00053803 vs. Swiss-Prot (Human)
Match: ZGRF1 (Protein ZGRF1 OS=Homo sapiens GN=ZGRF1 PE=1 SV=3) HSP 1 Score: 299.286 bits (765), Expect = 8.277e-84 Identity = 158/342 (46.20%), Postives = 215/342 (62.87%), Query Frame = -1
Query: 1872 YVKKAIEAHKMGANRTRLNRVRVVGVTCAACSFPLLKNLTFQVHLXVVGVTCAACSFPLLKNLTFQVHLLDECSQMIEPLSMVPIARFHCQRLVLVGDPNQLSPTIQGSESAHPEGLEVTLFERLQKAGLDPIILRCQYRCHPAISLLCSKMFYKGMLTDGVSTDDRGXSKMFYKGMLTDGVSTDDRGPLLDWLGPVSIADISDGKEATASDGSLFNVKEVQYCVKLVNAILAEGLEPTQVGIITQYKAQVKRISNQLQESGV-LSAMELKGVQISTVDAFQGAEKDVIILSCVRTKFIGFINCPRRTNVALSRAKHHLIIVGCHRLLRTDRLWGGVLELAE 2894
YV+K+IE HK+G NRT L +VRVVGVT CAAC FP + +L F V +LDECSQ+ EP S++PIARF C++L+LVGDP QL PTIQGS++AH GLE TLF+RL G PI+LR QYRCHPAIS + + +FY KG L +GV+ +R PLL+WL + ++ G E D S NV E + +KL+ +++A G+ + +G+IT YK+Q+ ++ + L S V ++K VQ+STVDAFQGAEK++IILSCVRT+ +GFI+ +R NVAL+R K HL+IVG LR ++LWG V++ E
Sbjct: 1763 YVRKSIEQHKLGTNRTLLKQVRVVGVT------------------------CAACPFPCMNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFY--------------------KGALMNGVTEIERSPLLEWLPTLCFYNVK-GLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLL--SAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCE 2057
The following BLAST results are available for this feature:
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