|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053806 ID=TCONS_00053806|Name=TCONS_00053806|organism=Clytia hemisphaerica|type=transcript|length=3108bp
ttgagaagaatcgaGTTGGAAAAATGGCTTTTGTGGAATTTGCACCAATT
CGAATCCCATTCTACCGAAGATTGCAAACACTTGCAGTATTGATATATTA
CTACTCATTTTATTTTGGTGCTCTTTTGGGATGCGGAACCATATTACTAT
TGTTGTTCAGCTCATATTACCCACTGGCTCTACTCTACCTTGGATGGGCT
TATATTTATGATGCCAGGACCCCAAGTCATGGTGGTAGAAGATCAAAGAT
CATGCGTGgattaaaaatttggaaatacttccGAGATTATTTTCCAATCA
AGTTGGTCAAAACTGAAGATTTGAATGCCAAGAAGAACTACATCTTCGGT
TATCATCCGCATGGTATTTTGTGCGCTGGAGCTTTTTCAACTTTTGCAAC
TGAAGCAACAAATTGGAGTGAAACATTCCCTGGCATTATTCCTCATCTTT
TACCACTAATTGCCCTATTCAAACCACCACTCTTTCGAGATTATATTATG
AGTTCTGGTATGTGTAACGTCACAAGAGAAAGTTGTGAATATATTCTCAA
AGAAAAAGGTCCTGGAAACTCCATATGCATTGTTGTTGGTGGAGCACCAG
AAGCTTTCGATGCACATCCTTTCAAAGATTACATTCTCATATTGAAACCG
AGAAAAGGATTCATCAAGCTGGCACTCAAGACAGGgTCAAGTCTCGTTCC
AGTCTTTGCATTTGGTGAGAACAACCTTTTCAATCAAGTGAGCAATCCAC
CTGGATCCATGTTACGCAAGATCCAAGAGAAAATCCAGAGCATGATTGCA
TTCGCTCCAGTCTTCTTCTATGGGCGTGGCGTGTTCCAATATACGTTCGG
AATGATTCCGCATCGGAGACCTGTACATGTAGTTGTTGGTAAACCGATCG
AAGTTGCCAAGATAGAAAACCCGACCTACGAAGAAATTGAAGCGCTTCAG
AAAATTTATATTGAAGAATTGAGAAAACTTTTCgaggaaaacaaagaaaa
atatgagAAAGATCCAAACATCAAATTAATCATTAACTAGGTTCTATTTC
TTCTTCTTAATCAAAATCAGACTTCTTAAAAAGATAATGAAATATTGGAA
GAAATTTTATGTGAAGTACTggtattatatttttcaaattctgagtTGTT
TGATTGGTCCGTTATGATTTTAGGTAACGCCtataatattttatatattg
gttttattgaaagatatttcaaagttttttaaaattttttcttgttgATA
GATTTTTACACTCTGAAGATGACCTCTTGTTGTGTAGGTCGAATAtacag
tttttaaataaaaaacatgacgCTTCTGGTTATTCTTTTTACCATAttgg
tttcaattttttttcttaaagtgAAGGTGGACAAAACTTGTAACACTAAT
TTCATTCATATCAAACTAaacatatttacattttttgttaattgtgttTT
TTATTCACTTAGCAAAAGACACTTTACTTGACCAATAATGTGATGTTTTA
AATCATTTTGTGCAATAGGTGGAggttttagaaattttataaatatcttt
ttcaggtaaaaattcggtgaaaatattattgtttgtttttatattaCTCA
TACGTAATTTTGAATAAGtcttattcttataaataattattattctaaaa
tatttttaatggccttcattttttgatacatgttgttttttataagcatc
ttCGTCAGACTTGCATATGTTCAAACTTGTTGTCCAGATATAGCTTATAT
CTATataagaccttttcataaattacgtcacgaacatcacttgcctcgta
ttcaaacatgTCATTGTCTCNgctataatagaccttttcataaattacgt
cacgaacatcacttgcctcgtattcaaacatgTCATTGTCCCTATTAAGT
CCATATTATGTTAAGATATTCTTAACACtttttatgaaaaggtttattcA
TCCTGATCCAAGTTTGTTTTAAATCTCAGTAATATTATAAACATTTGATT
TCAACAGCGTTCgaataatacacccctgtcccGCAGCCCCCGGTGGAACT
CTTTTCGTCAGtgaggatagaaattttattgtttcaaggttaaaaaccca
tgattttggagtgcaatttttaaatatgaaaTTTCGAGTGGGGTTGAAAt
ccaagggtattttcccaccggggacgaatttTTTGCCTACTTTTCCAATG
GGaatggggtcccagcgggtcggTGACACAGCGGTGTAGTGGAAGCATTA
AAATGTGGCTAACATATGGAAAGTCATTTTTTACTTAACCACTTTATTTA
ATTCAACATCTGAAAAAATAAGGTCGTTTGATTTTTATCCCATTGAAAAT
GGTTTCTTTATAGGTAGAGAGTGAccaattttctttaattttttcatgta
tattattatattagatattcttatcatgtacgcagttttgtaaatttttt
cactgataatgttttagaaaaatgaatatgacTTAAATAATATGACTAAT
AATACAGAAATCGTTCAAAGTTTAAGTTCGGGTTAAAAATATGGTATTGA
AATGTTTCCCCATTGAAAAGggattttgattgaaaattgaatataaaaaa
aagtaacaaaaatataaatacaaaaaaatagtaaaaaaaagtatccaaaa
tataaatacaaaaaaataataaaaaatagtaaaaaaaaagtatccaaaat
aTAAATACAAAAGCGTTAAAAGCGTAATAAGTTTGttataaaactacttt
aaaTAAGCTTGAACAAGGTTGTAACGAACACCGTCAAAAGCATTTCCAAA
CTCATTGTAATTCTCACAGCATGGGAAGGTATTTGTTGATTCGGGTAATC
AAACTTTGGTGAATCGGTTGCACATTTCTCTTCATCTCGCATACAATTTG
TGATATTCTTAGCGGCGCCCAAGCCACTATCATAAGCACCATGGGCGTAA
CCAAACTCCCACCTTTGATACGCCTCACCAGCAAAATAGATTGATTGTTG
GACAGGGTGATCCATTGCCTTGTAATCATTTTCATTGATGCCAGCTATTT
GATAAGAGTATGAACCGAGAAAGTTCGGGTTGATCGAGAAATCGTTTCTT
TTCATCTC Run BLAST on NCBI protein sequence of TCONS_00053806-protein >TCONS_00053806-protein ID=TCONS_00053806-protein|Name=TCONS_00053806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
EKNRVGKMAFVEFAPIRIPFYRRLQTLAVLIYYYSFYFGALLGCGTILLL
LFSSYYPLALLYLGWAYIYDARTPSHGGRRSKIMRGLKIWKYFRDYFPIK
LVKTEDLNAKKNYIFGYHPHGILCAGAFSTFATEATNWSETFPGIIPHLL
PLIALFKPPLFRDYIMSSGMCNVTRESCEYILKEKGPGNSICIVVGGAPE
AFDAHPFKDYILILKPRKGFIKLALKTGSSLVPVFAFGENNLFNQVSNPP
GSMLRKIQEKIQSMIAFAPVFFYGRGVFQYTFGMIPHRRPVHVVVGKPIE
VAKIENPTYEEIEALQKIYIEELRKLFEENKEKYEKDPNIKLIIN Run BLAST on NCBI transcript from alignment at scaffold_234:295634..304405+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053806 ID=TCONS_00053806|Name=TCONS_00053806|organism=Clytia hemisphaerica|type=transcript|length=8772bp|location=Sequence derived from alignment at scaffold_234:295634..304405+ (Clytia hemisphaerica)
ttgagaagaatcgaGTTGGTAAGACgctaaatttgtcggactttttctgt
cgatgacgtttcctttgtttaaaaattttataattggcaattttatttgc
ggcattttgactttgtttatcatagaccttttttcaaaggcaaCGTCCTg
ctgaataattatgtagtccagccataaaaacaacgatagagccatgcata
attactgtatcatgcatattgtaatgcatggttttattattgtttttctg
ctggactacataattattcaacagggtggcctctttgaaaaaaggtctat
tacatgCATGCGCCATTTTGGTTCGGAGgtgtcacagtgttcaaaggtca
taatttgaaaccacccataacacgcggttgttttttggctgctggctggc
tggcagttttagcgactccagaagtcacgcaactatcgttgacgtcaaac
caaatgtttcatttttccgtgaactttgaacccttgtaACTTTTCTTCTA
TNCTAGATAGCTAAAACATTTTCCAACCTTTTTCATTCATATAAGCTATC
TTCGATAAGCCAAAATTCATtaaacaacatttttcaactgcgTAATGATT
AGGTGCCAAATCTGCAATTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTAGGTGCCAAATCTGCAATTATTCCGCATTTTTCCCTA
TCGATTCCGCGCATGCTAATTCTTGCGATTAAAGGCTAGTTGCCCGCTAG
TTGAGCTCTTTTAAGATAGCTAAATCATTTTCCAACCTTATTCATTCATA
TAAGCTATCTTCGATAAGCCAAAATTCATTATTaagcaacatttttcaac
tgcgTAATGATTACGTGCCAAATCTGCAATTATTCCGCATTTTTCCCTCT
ATCGATTCCGTGGATCGGAAAACTGTTAAGAAAACCAATTGGCTATTAAA
CTGTGTTGAAAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggcctatgacc
cctcattttctttctttttcaaagctctacaagataggatagattttgaa
aaaaaaattaaaacttgaaaaatcttctggagttgctatggcagtttcct
tcaagaatatactccaaaaatggatgatggataggaaacccgaaaatttt
tacgaccgaccgactttttagacccaacgaggatgcaaaatgaaaatatt
tgtgaTTGCTGCCTTACCTACAATTCCGAGGATGATTATGAACAATATTT
TGTAACTTTCATGATGTCTTATTTATTCATGCTTCCACAGCGCTCTGCCA
ATCACTGCCTCTGcaactttcaaaacattccATTTTTTTGCAATGCTTCC
ACTGCACTGGGTGTGCTGCTATTCTGCAAAATCAGCAGAGCACGATTATA
TCTGCGATATAATTATGATAGCGCTTGCTGTGGTAAGCGTTTGAAGAGCA
ATTTAGCTTACTGTAGGGGTGGTGTAGTTTCAGAGTAACATTCTTGCCTT
GGgagttttaaagaaaaaggctgtttaaaaattgtgatgGAATTCGGCCG
TTGTAAACCTCCGAAAATGGCGATCTGAAATGAAAGCTTTGgtcaaattt
tggtcaaatcatgAAGACTGTTGTTAAGAAGGTGGGTAGGTATGTTTGAA
AGTAACGGTCCTTTCCTGTTACGCGTGGCGACTTTTTATAGGGACATCGC
CCCTTAAGAAGTATTGACTAATCTTCTTCTAATAACCCCAAAGTTCTACC
CCAAACCGTTGAATGACCCTTAGAGGATGTGTAACTCTGACAGAGAGCCG
AATTAGGATGATAGGAAAGACTTCAAAATGGgagtattttgaatttgaat
gaattaTGAGAGTGGAGATGACCTGGATCAGGATTTTAATGCAGAATACA
GTGGAAAAAGTCTTTGAGGTGATTTGAAAGTTGACACAATTTGTAACAAT
TTTTTGGGTTTGATCAGAGCAAGAAATTAAGGTTGCATACCATACTTAAA
AAAATCCCTGGTCATAAACTCAACCTTTGTTTCACAAATATATATTATAG
GAAAAATGGCTTTTGTGGAATTTGCACCAATTCGAATCCCATTCTACCGA
AGATTGCAAACACTTGCAGTATTGATATATTACTACTCATTTTATTTTGG
TGCTCTTTTGGGATGCGGAACCATATTACTATTGTTGTTCAGCTCATATT
ACCCACTGGCTCTACTCTACCTTGGATGGGCTTATATTTATGATGCCAGG
ACCCCAAGTCATGGTGGTAGAAGATCAAAGATCATGCGTGgattaaaaat
ttggaaatacttccGAGATTATTTTCCAATCAAGTTGGTCAAAACTGAAG
ATTTGAATGCCAAGAAGAACTACATCTTCGGTTATCATCCGCATGGTATT
TTGTGCGCTGGAGCTTTTTCAACTTTTGCAACTGAAGCAACAAATTGGAG
TGAAACATTCCCTGGCATTATTCCTCATCTTTTACCACTAATTGGTAAGA
CttgcaaatatttttttacaatggATGATTGTTTAAGTGTTTTTATAGGT
TCCTACATGATGCctaattatttttctaaatccTAGGAACAaactaagaa
caatttaagcttcatattaaaaaaaaaaagatttcacatAACTTTTATAA
GCGCCTTCAATCCCATAGAATGCACCCCCTCCCCCTGAGCTTAGAAgggg
ggctaaaccatttttgctggattgggggctgtatttttcaaaaatactgg
gggctagcttgctagggggggggggggggggtNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAGAGCTGAcaggttgaagatattttaaatta
tgttaaagatTTATGCTGTGGGGAAAATTTTATCactcttgaaaaaattt
ttacctGTGGCGCAATAAATTTTTCTACAATTTGCATGCAAAGTTTCTTT
CATATTTTCCTTTGTGCAGGTGAgggctatgtttctagaatttagtcgag
ggctggacccctctgcacactatgtaaATTTTAAGCTCAATAGTTTTAAT
AAGAAATAGTTTCAGTCTTTTAAGGTGATAACACCTAGCTATTTCATATT
TGCGGACGTGTTACCAGGGTGcaccaagaaaaagaaaagctctttgaatt
taatttctcaaaacCCAAAACGTAcaagggacgaaatttttgttgGAATT
TAATTTAACGGCTTGGAgagttttttgtttacaatatagCCTTTTTTGCC
CTAcaaagaccaattttagagttgattttccaaatattgaaaatatttgt
gTTTCGCAGAATTTTTTCCGCccaaatttcttcccttaaggtaacagAAA
AGGGGCACAAGGTTCTATGATTATGGTTTTTATCATTTTGCTTGATGCcg
aatttaaatttatttgagCCACAATGAGCCTTCATTCTTCCTTAATCCTA
AAATATTTCACCATCTCTTTTGCAGCCCTATTCAAACCACCACTCTTTCG
AGATTATATTATGAGTTCTGGTATGTGTAACGTCACAAGAGAAAGTTGTG
AATATATTCTCAAAGAAAAAGGTATATAGAAAGTAATCTAATACTTTTCT
CCAAGATTccgattttctttatgattctgatgagcaactttatttatttt
gttacccttcattttttatcttaaaTGGATGAACCTCTACCTATATTTTC
ACAGCCTTTTTTCATTATTGCCGATACTAAGTTAAGTAAAGTCGAACTTA
TTTGGGAGTTTCTCAAGTGtgacatttgaaaatttgtgtaggaCCCCTCT
ATCTCATAATATATCTCTATTACCTTTTTACCTTTTTGTGCAGGTCCTGG
AAACTCCATATGCATTGTTGTTGGTGGAGCACCAGAAGCTTTCGATGCAC
ATCCTTTCAAAGATTACATTCTCATATTGAAACCGAGAAAAGGATTCATC
AAGCTGGCACTCAAGACAGGGTAAGAAGAAAAATTGCTCTGGGATGTTCT
TTTAGTGGATAATAGACagatttcactgaagattgccatcttggttgaca
tgaaattttgagtATGAAGATTAAActaaatcgttttctttactcaaact
agtgGATAATAGACATTCTTTTTATCATCTCTGCATTAGTGTTGGattat
cagggtgaaaattgacaaaatgttATTCTTAATTTCACCTTGAGGGCGAG
ATTTGAATACAAAAtaggaaaaatcaaaaggaaacattatttttataagG
AGACGAGTTATTGCGTTCATTAATTATACGTTTTATAAGAAAAGGGTTAT
GAAAAATACGttaatgttaagaatatttcactcTCAGATTAGGAAAATTC
CAAAGAGTACTTCACCCTTAAGCcaaaaaaacactattcttttaaaaaag
cgtgtagccaAAGAGATCATGAGGAAAAACGAATAGTGTCTTAACTTGGT
AGACAAACACTACTTTtcaaattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgattgattgattgattgattgattg
attttaggTCAAGTCTCGTTCCAGTCTTTGCATTTGGTGAGAACAACCTT
TTCAATCAAGTGAGCAATCCACCTGGATCCATGTTACGCAAGATCCAAGA
GAAAATCCAGAGCATGATTGCATTCGCTCCAGTCTTCTTCTATGGGCGTG
GCGTGTTCCAATATACGTTCGGAATGATTCCGCATCGGAGACCTGTACAT
GTAGTTGGTAAGAGTGCATCCTTTGGGCTTTCGATGTATTTAGTCTTTGA
TTGTAACACGCCAAACAAAAAAGTCACCATCTCGTTGTCAACGCCTTTTT
CGCCAACGCCTTTTTCTCCGTAATTTTGATGATTATGATAAGTATTAAAA
ATTATTCTAACTCCCAGGCTAGTATACcttgtttgaaaaatcttccaACC
ATTTATTTTAATCCCCCCCATCTACTAGATACCGTAGAGAAGACCCGAGA
GACGCCTATATGCGTGTTTTTATGTCGATTagagatttagaaaaaaaaac
tttttctaaaaaaataacgTGCCTGAATGGTCAAATacgttaaaaatcaa
atttggcgggaacttaatttagcgaaatccgccaaattttcttcccgtca
aaatttcttcctttaatgtagtTTCAACTGTTGTTCTACTTTTATTCAGT
TGGTAAACCGATCGAAGTTGCCAAGATAGAAAACCCGACCTACGAAGAAA
TTGAAGCGCTTCAGAAAATTTATATTGAAGAATTGAGAAAACTTTTCgag
gaaaacaaagaaaaatatgagAAAGATCCAAACATCAAATTAATCATTAA
CTAGGTTCTATTTCTTCTTCTTAATCAAAATCAGACTTCTTAAAAAGATA
ATGAAATATTGGAAGAAATTTTATGTGAAGTACTggtattatatttttca
aattctgagtTGTTTGATTGGTCCGTTATGATTTTAGGTAACGCCtataa
tattttatatattggttttattgaaagatatttcaaagttttttaaaatt
ttttcttgttgATAGATTTTTACACTCTGAAGATGACCTCTTGTTGTGTA
GGTCGAATAtacagtttttaaataaaaaacatgacgCTTCTGGTTATTCT
TTTTACCATAttggtttcaattttttttcttaaagtgAAGGTGGACAAAA
CTTGTAACACTAATTTCATTCATATCAAACTAaacatatttacatttttt
gttaattgtgttTTTTATTCACTTAGCAAAAGACACTTTACTTGACCAAT
AATGTGATGTTTTAAATCATTTTGTGCAATAGGTGGAggttttagaaatt
ttataaatatctttttcaggtaaaaattcggtgaaaatattattgtttgt
ttttatattaCTCATACGTAATTTTGAATAAGtcttattcttataaataa
ttattattctaaaatatttttaatggccttcattttttgatacatgttgt
tttttataagcatcttCGTCAGACTTGCATATGTTCAAACTTGTTGTCCA
GATATAGCTTATATCTATataagaccttttcataaattacgtcacgaaca
tcacttgcctcgtattcaaacatgTCATTGTCTCNgctataatagacctt
ttcataaattacgtcacgaacatcacttgcctcgtattcaaacatgTCAT
TGTCCCTATTAAGTCCATATTATGTTAAGATATTCTTAACACtttttatg
aaaaggtttattcATCCTGATCCAAGTTTGTTTTAAATCTCAGTAATATT
ATAAACATTTGATTTCAACAGCGTTCgaataatacacccctgtcccGCAG
CCCCCGGTGGAACTCTTTTCGTCAGtgaggatagaaattttattgtttca
aggttaaaaacccatgattttggagtgcaatttttaaatatgaaaTTTCG
AGTGGGGTTGAAAtccaagggtattttcccaccggggacgaatttTTTGC
CTACTTTTCCAATGGGaatggggtcccagcgggtcggTGACACAGCGGTG
TAGTGGAAGCATTAAAATGTGGCTAACATATGGAAAGTCATTTTTTACTT
AACCACTTTATTTAATTCAACATCTGAAAAAATAAGGTCGTTTGATTTTT
ATCCCATTGAAAATGGTTTCTTTATAGGTAGAGAGTGAccaattttcttt
aattttttcatgtatattattatattagatattcttatcatgtacgcagt
tttgtaaattttttcactgataatgttttagaaaaatgaatatgacTTAA
ATAATATGACTAATAATACAGAAATCGTTCAAAGTTTAAGTTCGGGTTAA
AAATATGGTATTGAAATGTTTCCCCATTGAAAAGggattttgattgaaaa
ttgaatataaaaaaaagtaacaaaaatataaatacaaaaaaatagtaaaa
aaaagtatccaaaatataaatacaaaaaaataataaaaaatagtaaaaaa
aaagtatccaaaataTAAATACAAAAGCGTTAAAAGCGTAATAAGTTTGt
tataaaactactttaaaTAAGCTTGAACAAGGTTGTAACGAACACCGTCA
AAAGCATTTCCAAACTCATTGTAATTCTCACAGCATGGGAAGGTATTTGT
TGATTCGGGTAATCAAACTTTGGTGAATCGGTTGCACATTTCTCTTCATC
TCGCATACAATTTGTGATATTCTTAGCGGCGCCCAAGCCACTATCATAAG
CACCATGGGCGTAACCAAACTCCCACCTTTGATACGCCTCACCAGCAAAA
TAGATTGATTGTTGGACAGGGTGATCCATTGCCTTGTAATCATTTTCATT
GATGCCAGCTATTTGATAAGAGTATGAACCGAGAAAGTTCGGGTTGATCG
AGAAATCGTTTCTTTTCATCTC Coding sequence (CDS) from alignment at scaffold_234:295634..304405+ >TCONS_00053806 ID=TCONS_00053806|Name=TCONS_00053806|organism=Clytia hemisphaerica|type=CDS|length=6228bp|location=Sequence derived from alignment at scaffold_234:295634..304405+ (Clytia hemisphaerica)
gagaagaatcgaGTTGGAAAAATGGCTTTTGTGGAATTTGCACCAATTCG
AATCCCATTCTACCGAAGATTGCAAACACTTGCAGTATTGATATATTACT
ACTCATTTTATTTTGGTGCTCTTTTGGGATGCGGAACCATATTACTATTG
TTGTTCAGCTCATATTACCCACTGGCTCTACTCTACCTTGGATGGGCTTA
TATTTATGATGCCAGGACCCCAAGTCATGGTGGTAGAAGATCAAAGATCA
TGCGTGgattaaaaatttggaaatacttccGAGATTATTTTCCAATCAAG
TTGGTCAAAACTGAAGATTTGAATGCCAAGAAGAACTACATCTTCGGTTA
TCATCCGCATGGTATTTTGTGCGCTGGAGCTTTTTCAACTTTTGCAACTG
AAGCAACAAATTGGAGTGAAACATTCCCTGGCATTATTCCTCATCTTTTA
CCACTAATTGCCCTATTCAAACCACCACTCTTTCGAGATTATATTATGAG
TTCTGGTATGTGTAACGTCACAAGAGAAAGTTGTGAATATATTCTCAAAG
AAAAAGGTCCTGGAAACTCCATATGCATTGTTGTTGGTGGAGCACCAGAA
GCTTTCGATGCACATCCTTTCAAAGATTACATTCTCATATTGAAACCGAG
AAAAGGATTCATCAAGCTGGCACTCAAGACAGGgTCAAGTCTCGTTCCAG
TCTTTGCATTTGGTGAGAACAACCTTTTCAATCAAGTGAGCAATCCACCT
GGATCCATGTTACGCAAGATCCAAGAGAAAATCCAGAGCATGATTGCATT
CGCTCCAGTCTTCTTCTATGGGCGTGGCGTGTTCCAATATACGTTCGGAA
TGATTCCGCATCGGAGACCTGTACATGTAGTTGTTGGTAAACCGATCGAA
GTTGCCAAGATAGAAAACCCGACCTACGAAGAAATTGAAGCGCTTCAGAA
AATTTATATTGAAGAATTGAGAAAACTTTTCgaggaaaacaaagaaaaat
atgagAAAGATCCAAACATCAAATTAATCATTAACTAGgagaagaatcga
GTTGGAAAAATGGCTTTTGTGGAATTTGCACCAATTCGAATCCCATTCTA
CCGAAGATTGCAAACACTTGCAGTATTGATATATTACTACTCATTTTATT
TTGGTGCTCTTTTGGGATGCGGAACCATATTACTATTGTTGTTCAGCTCA
TATTACCCACTGGCTCTACTCTACCTTGGATGGGCTTATATTTATGATGC
CAGGACCCCAAGTCATGGTGGTAGAAGATCAAAGATCATGCGTGgattaa
aaatttggaaatacttccGAGATTATTTTCCAATCAAGTTGGTCAAAACT
GAAGATTTGAATGCCAAGAAGAACTACATCTTCGGTTATCATCCGCATGG
TATTTTGTGCGCTGGAGCTTTTTCAACTTTTGCAACTGAAGCAACAAATT
GGAGTGAAACATTCCCTGGCATTATTCCTCATCTTTTACCACTAATTGCC
CTATTCAAACCACCACTCTTTCGAGATTATATTATGAGTTCTGGTATGTG
TAACGTCACAAGAGAAAGTTGTGAATATATTCTCAAAGAAAAAGGTCCTG
GAAACTCCATATGCATTGTTGTTGGTGGAGCACCAGAAGCTTTCGATGCA
CATCCTTTCAAAGATTACATTCTCATATTGAAACCGAGAAAAGGATTCAT
CAAGCTGGCACTCAAGACAGGgTCAAGTCTCGTTCCAGTCTTTGCATTTG
GTGAGAACAACCTTTTCAATCAAGTGAGCAATCCACCTGGATCCATGTTA
CGCAAGATCCAAGAGAAAATCCAGAGCATGATTGCATTCGCTCCAGTCTT
CTTCTATGGGCGTGGCGTGTTCCAATATACGTTCGGAATGATTCCGCATC
GGAGACCTGTACATGTAGTTGTTGGTAAACCGATCGAAGTTGCCAAGATA
GAAAACCCGACCTACGAAGAAATTGAAGCGCTTCAGAAAATTTATATTGA
AGAATTGAGAAAACTTTTCgaggaaaacaaagaaaaatatgagAAAGATC
CAAACATCAAATTAATCATTAACTAGgagaagaatcgaGTTGGAAAAATG
GCTTTTGTGGAATTTGCACCAATTCGAATCCCATTCTACCGAAGATTGCA
AACACTTGCAGTATTGATATATTACTACTCATTTTATTTTGGTGCTCTTT
TGGGATGCGGAACCATATTACTATTGTTGTTCAGCTCATATTACCCACTG
GCTCTACTCTACCTTGGATGGGCTTATATTTATGATGCCAGGACCCCAAG
TCATGGTGGTAGAAGATCAAAGATCATGCGTGgattaaaaatttggaaat
acttccGAGATTATTTTCCAATCAAGTTGGTCAAAACTGAAGATTTGAAT
GCCAAGAAGAACTACATCTTCGGTTATCATCCGCATGGTATTTTGTGCGC
TGGAGCTTTTTCAACTTTTGCAACTGAAGCAACAAATTGGAGTGAAACAT
TCCCTGGCATTATTCCTCATCTTTTACCACTAATTGCCCTATTCAAACCA
CCACTCTTTCGAGATTATATTATGAGTTCTGGTATGTGTAACGTCACAAG
AGAAAGTTGTGAATATATTCTCAAAGAAAAAGGTCCTGGAAACTCCATAT
GCATTGTTGTTGGTGGAGCACCAGAAGCTTTCGATGCACATCCTTTCAAA
GATTACATTCTCATATTGAAACCGAGAAAAGGATTCATCAAGCTGGCACT
CAAGACAGGgTCAAGTCTCGTTCCAGTCTTTGCATTTGGTGAGAACAACC
TTTTCAATCAAGTGAGCAATCCACCTGGATCCATGTTACGCAAGATCCAA
GAGAAAATCCAGAGCATGATTGCATTCGCTCCAGTCTTCTTCTATGGGCG
TGGCGTGTTCCAATATACGTTCGGAATGATTCCGCATCGGAGACCTGTAC
ATGTAGTTGTTGGTAAACCGATCGAAGTTGCCAAGATAGAAAACCCGACC
TACGAAGAAATTGAAGCGCTTCAGAAAATTTATATTGAAGAATTGAGAAA
ACTTTTCgaggaaaacaaagaaaaatatgagAAAGATCCAAACATCAAAT
TAATCATTAACTAGgagaagaatcgaGTTGGAAAAATGGCTTTTGTGGAA
TTTGCACCAATTCGAATCCCATTCTACCGAAGATTGCAAACACTTGCAGT
ATTGATATATTACTACTCATTTTATTTTGGTGCTCTTTTGGGATGCGGAA
CCATATTACTATTGTTGTTCAGCTCATATTACCCACTGGCTCTACTCTAC
CTTGGATGGGCTTATATTTATGATGCCAGGACCCCAAGTCATGGTGGTAG
AAGATCAAAGATCATGCGTGgattaaaaatttggaaatacttccGAGATT
ATTTTCCAATCAAGTTGGTCAAAACTGAAGATTTGAATGCCAAGAAGAAC
TACATCTTCGGTTATCATCCGCATGGTATTTTGTGCGCTGGAGCTTTTTC
AACTTTTGCAACTGAAGCAACAAATTGGAGTGAAACATTCCCTGGCATTA
TTCCTCATCTTTTACCACTAATTGCCCTATTCAAACCACCACTCTTTCGA
GATTATATTATGAGTTCTGGTATGTGTAACGTCACAAGAGAAAGTTGTGA
ATATATTCTCAAAGAAAAAGGTCCTGGAAACTCCATATGCATTGTTGTTG
GTGGAGCACCAGAAGCTTTCGATGCACATCCTTTCAAAGATTACATTCTC
ATATTGAAACCGAGAAAAGGATTCATCAAGCTGGCACTCAAGACAGGgTC
AAGTCTCGTTCCAGTCTTTGCATTTGGTGAGAACAACCTTTTCAATCAAG
TGAGCAATCCACCTGGATCCATGTTACGCAAGATCCAAGAGAAAATCCAG
AGCATGATTGCATTCGCTCCAGTCTTCTTCTATGGGCGTGGCGTGTTCCA
ATATACGTTCGGAATGATTCCGCATCGGAGACCTGTACATGTAGTTGTTG
GTAAACCGATCGAAGTTGCCAAGATAGAAAACCCGACCTACGAAGAAATT
GAAGCGCTTCAGAAAATTTATATTGAAGAATTGAGAAAACTTTTCgagga
aaacaaagaaaaatatgagAAAGATCCAAACATCAAATTAATCATTAACT
AGgagaagaatcgaGTTGGAAAAATGGCTTTTGTGGAATTTGCACCAATT
CGAATCCCATTCTACCGAAGATTGCAAACACTTGCAGTATTGATATATTA
CTACTCATTTTATTTTGGTGCTCTTTTGGGATGCGGAACCATATTACTAT
TGTTGTTCAGCTCATATTACCCACTGGCTCTACTCTACCTTGGATGGGCT
TATATTTATGATGCCAGGACCCCAAGTCATGGTGGTAGAAGATCAAAGAT
CATGCGTGgattaaaaatttggaaatacttccGAGATTATTTTCCAATCA
AGTTGGTCAAAACTGAAGATTTGAATGCCAAGAAGAACTACATCTTCGGT
TATCATCCGCATGGTATTTTGTGCGCTGGAGCTTTTTCAACTTTTGCAAC
TGAAGCAACAAATTGGAGTGAAACATTCCCTGGCATTATTCCTCATCTTT
TACCACTAATTGCCCTATTCAAACCACCACTCTTTCGAGATTATATTATG
AGTTCTGGTATGTGTAACGTCACAAGAGAAAGTTGTGAATATATTCTCAA
AGAAAAAGGTCCTGGAAACTCCATATGCATTGTTGTTGGTGGAGCACCAG
AAGCTTTCGATGCACATCCTTTCAAAGATTACATTCTCATATTGAAACCG
AGAAAAGGATTCATCAAGCTGGCACTCAAGACAGGgTCAAGTCTCGTTCC
AGTCTTTGCATTTGGTGAGAACAACCTTTTCAATCAAGTGAGCAATCCAC
CTGGATCCATGTTACGCAAGATCCAAGAGAAAATCCAGAGCATGATTGCA
TTCGCTCCAGTCTTCTTCTATGGGCGTGGCGTGTTCCAATATACGTTCGG
AATGATTCCGCATCGGAGACCTGTACATGTAGTTGTTGGTAAACCGATCG
AAGTTGCCAAGATAGAAAACCCGACCTACGAAGAAATTGAAGCGCTTCAG
AAAATTTATATTGAAGAATTGAGAAAACTTTTCgaggaaaacaaagaaaa
atatgagAAAGATCCAAACATCAAATTAATCATTAACTAGgagaagaatc
gaGTTGGAAAAATGGCTTTTGTGGAATTTGCACCAATTCGAATCCCATTC
TACCGAAGATTGCAAACACTTGCAGTATTGATATATTACTACTCATTTTA
TTTTGGTGCTCTTTTGGGATGCGGAACCATATTACTATTGTTGTTCAGCT
CATATTACCCACTGGCTCTACTCTACCTTGGATGGGCTTATATTTATGAT
GCCAGGACCCCAAGTCATGGTGGTAGAAGATCAAAGATCATGCGTGgatt
aaaaatttggaaatacttccGAGATTATTTTCCAATCAAGTTGGTCAAAA
CTGAAGATTTGAATGCCAAGAAGAACTACATCTTCGGTTATCATCCGCAT
GGTATTTTGTGCGCTGGAGCTTTTTCAACTTTTGCAACTGAAGCAACAAA
TTGGAGTGAAACATTCCCTGGCATTATTCCTCATCTTTTACCACTAATTG
CCCTATTCAAACCACCACTCTTTCGAGATTATATTATGAGTTCTGGTATG
TGTAACGTCACAAGAGAAAGTTGTGAATATATTCTCAAAGAAAAAGGTCC
TGGAAACTCCATATGCATTGTTGTTGGTGGAGCACCAGAAGCTTTCGATG
CACATCCTTTCAAAGATTACATTCTCATATTGAAACCGAGAAAAGGATTC
ATCAAGCTGGCACTCAAGACAGGgTCAAGTCTCGTTCCAGTCTTTGCATT
TGGTGAGAACAACCTTTTCAATCAAGTGAGCAATCCACCTGGATCCATGT
TACGCAAGATCCAAGAGAAAATCCAGAGCATGATTGCATTCGCTCCAGTC
TTCTTCTATGGGCGTGGCGTGTTCCAATATACGTTCGGAATGATTCCGCA
TCGGAGACCTGTACATGTAGTTGTTGGTAAACCGATCGAAGTTGCCAAGA
TAGAAAACCCGACCTACGAAGAAATTGAAGCGCTTCAGAAAATTTATATT
GAAGAATTGAGAAAACTTTTCgaggaaaacaaagaaaaatatgagAAAGA
TCCAAACATCAAATTAATCATTAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053806-exon-scaffold_234-1491911889:295634..295651 | TCONS_00053806-exon-scaffold_234-1491911889:295634..295651 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1510915933:295634..295651 | TCONS_00053806-exon-scaffold_234-1510915933:295634..295651 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1575043694:295634..295651 | TCONS_00053806-exon-scaffold_234-1575043694:295634..295651 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1491911889:298934..299377 | TCONS_00053806-exon-scaffold_234-1491911889:298934..299377 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1510915933:298934..299377 | TCONS_00053806-exon-scaffold_234-1510915933:298934..299377 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1575043694:298934..299377 | TCONS_00053806-exon-scaffold_234-1575043694:298934..299377 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1491911889:300459..300554 | TCONS_00053806-exon-scaffold_234-1491911889:300459..300554 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1510915933:300459..300554 | TCONS_00053806-exon-scaffold_234-1510915933:300459..300554 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1575043694:300459..300554 | TCONS_00053806-exon-scaffold_234-1575043694:300459..300554 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1491911889:300827..300953 | TCONS_00053806-exon-scaffold_234-1491911889:300827..300953 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1510915933:300827..300953 | TCONS_00053806-exon-scaffold_234-1510915933:300827..300953 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1575043694:300827..300953 | TCONS_00053806-exon-scaffold_234-1575043694:300827..300953 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1491911889:301541..301740 | TCONS_00053806-exon-scaffold_234-1491911889:301541..301740 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1510915933:301541..301740 | TCONS_00053806-exon-scaffold_234-1510915933:301541..301740 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1575043694:301541..301740 | TCONS_00053806-exon-scaffold_234-1575043694:301541..301740 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1491911889:302183..304405 | TCONS_00053806-exon-scaffold_234-1491911889:302183..304405 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1510915933:302183..304405 | TCONS_00053806-exon-scaffold_234-1510915933:302183..304405 | Clytia hemisphaerica | exon |
| TCONS_00053806-exon-scaffold_234-1575043694:302183..304405 | TCONS_00053806-exon-scaffold_234-1575043694:302183..304405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:295634..304405 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007130 | DAGAT |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016747 |
transferase activity, transferring acyl groups other than amino-acyl groups |
Blast
BLAST of TCONS_00053806 vs. Swiss-Prot (Human)
Match: MOGT2 (2-acylglycerol O-acyltransferase 2 OS=Homo sapiens GN=MOGAT2 PE=1 SV=2) HSP 1 Score: 330.487 bits (846), Expect = 2.782e-103 Identity = 164/325 (50.46%), Postives = 223/325 (68.62%), Query Frame = 3
Query: 33 VEFAPIRIPFYRRLQTLAVLIYYYSFYFXXXXXXXXXXXXXFSSYYPLALLYLGWAYIYDARTPSHGGRRSKIMRGLKIWKYFRDYFPIKLVKTEDLNAKKNYIFGYHPHGILCAGAFSTFATEATNWSETFPGIIPHLLPLIALFKPPLFRDYIMSSGMCNVTRESCEYILKEKGPGNSICIVVGGAPEAFDAHPFKDYILILKPRKGFIKLALKTGSSLVPVFAFGENNLFNQVSNPPGSMLRKIQEKIQSMIAFAPVFFYGRGVFQYTFGMIPHRRPVHVVVGKPIEVAKIENPTYEEIEALQKIYIEELRKLFEENKEKYE 1007
VEFAP+ +P+ RRLQTLAVL + +SF A + + LLF+ ++ L +LY W Y+ D P GGR + +R IWKY +DYFPI LVKT +L+ +NYI G+HPHG+L GAF+ TE+T +S FPGI PHL+ L F+ P FRDYIMS+G+ +ES +IL KG GN + I+VGGA EA DA P + L+L+ RKGF++LAL G+ LVP+F+FGEN+LF+Q+ N GS LR IQ ++Q ++ + F+GRGVFQY+FG+IP+RRP+ VVGKPIEV K +P+ EE+ L + YI+EL LFE +K K+
Sbjct: 2 VEFAPLFMPWERRLQTLAVLQFVFSFLALAEICTVGFIALLFTRFWLLTVLYAAWWYL-DRDKPRQGGRHIQAIRCWTIWKYMKDYFPISLVKTAELDPSRNYIAGFHPHGVLAVGAFANLCTESTGFSSIFPGIRPHLMMLTLWFRAPFFRDYIMSAGLVTSEKESAAHILNRKGGGNLLGIIVGGAQEALDARP-GSFTLLLRNRKGFVRLALTHGAPLVPIFSFGENDLFDQIPNSSGSWLRYIQNRLQKIMGISLPLFHGRGVFQYSFGLIPYRRPITTVVGKPIEVQKTLHPSEEEVNQLHQRYIKELCNLFEAHKLKFN 324
The following BLAST results are available for this feature:
|
