TCONS_00053841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053841
Unique NameTCONS_00053841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length915

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053841 ID=TCONS_00053841|Name=TCONS_00053841|organism=Clytia hemisphaerica|type=transcript|length=915bp
CCAAATTTTCCGTTCATATTTTCAGCTGCTGGAAAGTATTTCTATGAAAA
AACTGATGGTAACTTTTTGATCCTGGAAGCGAACAATTACATCGGTGGGC
GTGTAAAGAATATTGACTTCTATGGTTACAATATACCACTGGGTGCTGGC
TGGTTGCATGAAATCAATGAGGATCATATACTGTACCGAAAAGCTAAAGA
ATACAACTTAAAAACTTTCATTGATAATTATTGGTTGAGCACGATAGATT
TTAGGTGAATACTGTAAATAAAGTCATTTGTATACAGATGAAGAAATCAA
AGACCAGGCTTTCAAAGCGTTGAAAAAGGTTTTCCCAACTGCAATAAGAC
CTACATataTGGTCCGAAATGATTTTATAAACGGACCTAACTTCCAAGGT
GCGTATTCTTATCAAGCCCCCGGAATACGGGAAGCTGATTACCGGGCTTT
GGAACACCCGTTACAGCAATCGATCTATTTTTCTGGTGAAGCATATAATC
GTTGGAATTATGGCAGTGCACCACAGGCGTATATGAGTGGTTGGAACGCC
GCTAAGAATATTACCAATTGTATGGCTGATGCAAGTTCTTGTTTAGGAGA
CACTCCGCTCCAGGCTTCTTCTGCTTACCACGTGGCTTTTAACATGTATA
TGACTTtaatgtcttttatattgactttgattttatcgtTTTGGCGCTTT
TAAGTCAATCATGTTTCTTATTAATCAAAGCATATACACCACAATAAACA
ATTTACTCGTTGACATGCAAAAAACAGATATTTTATTCATCTTTTTCTAA
TTGAGGGTCAGCCCCTGAAAATAAGTGACATTTATTTGGCTGCAGTCTTT
GGATTGAAAAATCAAGAAGTATGTTTTTCTTGGAAACCTTAATGCGTACT
TTGATTACAATCAGT
Run BLAST on NCBI

protein sequence of TCONS_00053841-protein

>TCONS_00053841-protein ID=TCONS_00053841-protein|Name=TCONS_00053841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MVRNDFINGPNFQGAYSYQAPGIREADYRALEHPLQQSIYFSGEAYNRWN
YGSAPQAYMSGWNAAKNITNCMADASSCLGDTPLQASSAYHVAFNMYMTL
MSFILTLILSFWRF
Run BLAST on NCBI

transcript from alignment at scaffold_234:326455..330984-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053841 ID=TCONS_00053841|Name=TCONS_00053841|organism=Clytia hemisphaerica|type=transcript|length=4530bp|location=Sequence derived from alignment at scaffold_234:326455..330984- (Clytia hemisphaerica)
CCAAATTTTCCGTTCATATTTTCAGCTGCTGGAAAGTATTTCTATGAAAA
AACTGATGGTAACTTTTTGATCCTGGAAGCGAACAATTACATCGGTGGGC
GTGTAAAGAATATTGACTTCTATGGTTACAATATACCACTGGGTGCTGGC
TGGTTGCATGAAATCAATGAGGATCATATACTGTACCGAAAAGCTAAAGA
ATACAACTTAAAAACTTTCATTGATAATTATTGGTTGAGCACGATAGATT
TTAGGTGAGCCGTTTAATTTCCCGTCAAGGAGAAACCCCGTAAAATGCTT
TCTATAGTTCGAATCTCTCCGTAATTAGAACAACTAAGATTACCCTTTCG
ATTTCGAATTAGCGAGAGTCATATCTATAACTTTCGGATATTGTCACATG
CTTTTACTCGGTAAGGCTCTAAAATGAATAGACAGTTGTGGACACAGGAG
GAGGGGGCTAAACACTTCGCTGCCGAGTTTTTTTCAGAAATCGAAAATTT
GACCTTTTGGAATTTCATTGAAAGTTTGACTTTCAGAGTCTCCTGCGGCC
TGGGTTTCGCTGAAAATGCCTTCAAATTGTATACCGATCGTAGCAGAGTT
TTAGAACTCTACCCTTCTAACCTAAGTTAGAGCCCTTCCAAATCGCTTGT
CGCTTTAAAATTTCGTGCCTTTATTTAATGATCTACGCAACATTTATACA
TATTATATAGTATTTAATATAGTTTTCAATAAAAACGATCGCTACAATTT
GGGTTTAATCAGAGAAGTTGTTTTTTATCCCTTTACACTTCTCTGGATAA
ATGTTATTTGTTAACAGCGGACAGCTACTGTTCTTGGTCTTATAAAAGCA
TAAATGTTCCTTTGGCAAAACACTTTTTAAATTTTTCTTTTCTTTTTTTC
ATACAGAAACGGGACTGACGGAAGCGTCATTCCATCGAGCGAAGTTACCA
AAATCAACGATCGCGCGGTCATCGCTCAAGCCCGTATGGACGCGCTGGTC
GAGAAGCGTGTTAACAACGGAAAAGGAACTGTAGATGTGAAAACAGGTCT
TCGTTGGGGAGGTTGGATCTCTAAAACACCTTTGGAAAATGCGGTGGAGT
ATTTCCGGTACGATTTTGAAAGTGGGATGAAGCCGGACGTTGTAGATGCA
ATGATTTATGGGTCAACTGACATCGATGGTAATCTTTATGGATCTATTCA
ATCTCGTCCCCGTGTATCCCAGGCTTTCTTTGCGTTACTGATGGACTTGA
TGAATATTATCCGGCGCTGTCAGTAAACATCAAAAAGCTGATACCGTAAG
TTGGTCTAATGTCGACATCCCTCTTCTAATTTCGGCACCTTTCTTTAGGG
ATAGGAATAATAGGAAGGTCGGAATCGTCGATGAAAACTATTTTTCTTTC
CTGATCAGAGTAAGAGAAACTTTTGTCTATTTTCTCAAGATTTGTGAAAA
AGGGTGGAAATTAGAAAATTTTTGAATTTTTGAATTTTGCGTCTACTTTA
AGTCATTTTCGCCACTTTGTCAATTTTTCGTTCTGAAAGGGTTCCAAATT
TACCAAAAATTCATATCTCAAGCTCCAGAGGCACGTCCCCGTCAGTCGTC
AAGGTCAGTGCCCCGGAGTTATGGACTAATTAAGAAGGCATGTAGGAAAG
GTGTCACCCTCAAAGGGTGACCTTTATAATCTTTTTATAGAAATTGCACA
TGAAAGAATTGTGACCGATCCGAGAGGTTATGGTTTTCCCATATTCGAAG
AAAGTAAGCCGTACCAATCCAAAATCAAACTCAACAAAACAGTCAGTAAA
ATCACACTCCACTCAAAACATGATTTAACAGTTCAATGCAAGGATGGAAC
ATCTTATACTACAAAAAACGTTTTGGTCACAGTCAGTACTGGAGTTTTAC
AATCAGGGAATATCAAGTTCTCACCAGCATTGCCTGATTGGAAAACTGAA
GGACTCGATATGGCTCCTATGTGTTGGTATTGTAAAATTTTTCTTAAATT
TGACACAGTGTTTTGGGATAACAGTAAGGAGTACTTGGTTTTGGCAACTG
AATTGAAAGGTTACTGGATACATTTTCAAAATGTTAACATGGATGGATTC
TTTACTGGCTCAAAAACATTGCAAGCTTTATTGACAGGTAGTAATCTATT
TGTGATTTTCTAATAAACTTGCTGTATACACCATTGTCTCATAGCCCCGG
TGAAGCTGTTTCCCCTTATTGGGGACGAAGATTTCTAACGAAATTCCAAT
GGGGATCTAGAAATTATATTGTACCATGATAAGAAAAATCTAGTGGTTTT
AGAATGCAATTTTCGAATTGAATTTTAAATGTTGAAATCATAATTAAATT
TTCTAGTGGGGTGAATTTATAGGGTATTTTTCCCACCGGGGCAGAATTAT
TGCTAAATTTTACATTGGGGTGTTTGTATACTCCAATAGAATTCCTTCGA
TTCGTATTATTGAGTTTATGTTTTTGCACTTTTGAGGACGGTAGAATGAC
TGAAGCGAATTGGAAAAACCCGCTGTTCTGACCCGAAAAATTGAGGACGA
TGAAAGTGCTGTTTACCGTCGTTTCCAGTTTAATCAAGTTAAGATCTAGA
TAAGAAGCCTACCGTCTCCGTTGCATAAAAACATAGATACATAAATTCGC
TAATATTAGCCAGAGGGGATTAATTCGTACGGTAAACAGCGAGTGACATT
CCCTTATTGAAGATACTGTCTAATTTATGTGAAGATCGGGTACCAGATAC
TATAGTTTGCTGTGAATGTTAAAGCTTTCTTTGACTAAAATGTAACGGTG
GGGCTATTTAGGGTAAATATTAATTTTTCATGGTCTGGGATTTCTGGCGC
TTTCCTTTTCGCATACTCTTAAGGCTTTGGGACTTCTCGTGTCTCCACCC
CATTTTTCTTTCAATAACATTTGTGCTTCTCTCACTTCTTTCCCTGGGAC
AATGGAGCAAAATTGGTTTGAAACAATGTCCCAGAGACAAAATCAGCGTG
TCTTTTGGATGGAGCATGTTGCATTGCACCAACGCGAAAAGAACTTCTCG
TGTCCCCAAGCCTTTAGTTATTAGCATACTAATGTAAACTCTACTTATAG
GTGAATACTGTAAATAAAGTCATTTGTATACAGATGAAGAAATCAAAGAC
CAGGCTTTCAAAGCGTTGAAAAAGGTTTTCCCAACTGCAATAAGACCTAC
ATGTATACGACTTTCAATAGACCTTTTAATAAAAAAGTGATGCATTGTGG
GATTGCTTCGAGCGTATTACAATAGAATTCCCTCGAGGAAATCCTAAGAG
ATTTCTATTGTAATACACTCGAAACAATCCCACAATGCATCGCTTTTTTA
GAAAAATCAAAAACTCCGATAAGGTCTATTTGACTTTCTTGTCTTGATGT
CTGCAACAAGTCATGTTTGAGAATCCATTTAGTTTTTCAAAGTGACAATC
GACAATAATTTTATAGTCCATGGAATTTCCAAACCAAAAAAAGATTCTCT
GTGGTTAGAACTTAAGCTATCCCAGCAGGCACACAACGTTATTTCAACGT
TCATCTAACGTTATATGGACGTTGTGAACGTTAGATAAACGTCGAAAAAA
CCTTGTGTGCCAGCTCAGCTGGTTAGCTACTTTCTATACTTACAACGTGC
GGTCCACTTCAAAAGGGATTATCATTGAGGGTTGATATTCTTTTAGTTAA
TGATTATTAGTTTCACAAGCTGTGAAGAAGATTTCCTATTTGTAAAAGGT
CGACATAAATCGTTAATAAAGCTCTGTCAGTCCAAATGATCCATGGCGCA
AAATAGATTGGGCGTTTGCTACTGGCTACTGGCTCTATTGTTTCAATTCA
AGATTAGTGGCAAGCACTAGGCTGCTGGTATTCACTAACGGACTCGTGCT
CCCGTTCTTTTTGCGTGTTCTGTGTAAGATTACGTCATGAATTTTAACTA
ATTTCCAAATTTTTTTCTTAGATATGGTCCGAAATGATTTTATAAACGGA
CCTAACTTCCAAGGTGCGTATTCTTATCAAGCCCCCGGAATACGGGAAGC
TGATTACCGGGCTTTGGAACACCCGTTACAGCAATCGATCTATTTTTCTG
GTGAAGCATATAATCGTTGGAATTATGGCAGTGCACCACAGGCGTATATG
AGTGGTTGGAACGCCGCTAAGAATATTACCAATTGTATGGCTGATGCAAG
TTCTTGTTTAGGAGACACTCCGCTCCAGGCTTCTTCTGCTTACCACGTGG
CTTTTAACATGTATATGACTTTAATGTCTTTTATATTGACTTTGATTTTA
TCGTTTTGGCGCTTTTAAGTCAATCATGTTTCTTATTAATCAAAGCATAT
ACACCACAATAAACAATTTACTCGTTGACATGCAAAAAACAGATATTTTA
TTCATCTTTTTCTAATTGAGGGTCAGCCCCTGAAAATAAGTGACATTTAT
TTGGCTGCAGTCTTTGGATTGAAAAATCAAGAAGTATGTTTTTCTTGGAA
ACCTTAATGCGTACTTTGATTACAATCAGT

Coding sequence (CDS) from alignment at scaffold_234:326455..330984-

>TCONS_00053841 ID=TCONS_00053841|Name=TCONS_00053841|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_234:326455..330984- (Clytia hemisphaerica)
ATGGTCCGAAATGATTTTATAAACGGACCTAACTTCCAAGGTGCGTATTC
TTATCAAGCCCCCGGAATACGGGAAGCTGATTACCGGGCTTTGGAACACC
CGTTACAGCAATCGATCTATTTTTCTGGTGAAGCATATAATCGTTGGAAT
TATGGCAGTGCACCACAGGCGTATATGAGTGGTTGGAACGCCGCTAAGAA
TATTACCAATTGTATGGCTGATGCAAGTTCTTGTTTAGGAGACACTCCGC
TCCAGGCTTCTTCTGCTTACCACGTGGCTTTTAACATGTATATGACTTTA
ATGTCTTTTATATTGACTTTGATTTTATCGTTTTGGCGCTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033975XLOC_033975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053841-exon-scaffold_234-1575043694:330731..330984TCONS_00053841-exon-scaffold_234-1575043694:330731..330984Clytia hemisphaericaexon
TCONS_00053841-exon-scaffold_234-1575043694:327783..327884TCONS_00053841-exon-scaffold_234-1575043694:327783..327884Clytia hemisphaericaexon
TCONS_00053841-exon-scaffold_234-1575043694:326455..327013TCONS_00053841-exon-scaffold_234-1575043694:326455..327013Clytia hemisphaericaexon
TCONS_00053841-exon-scaffold_234-1510915933:330731..330984TCONS_00053841-exon-scaffold_234-1510915933:330731..330984Clytia hemisphaericaexon
TCONS_00053841-exon-scaffold_234-1510915933:327783..327884TCONS_00053841-exon-scaffold_234-1510915933:327783..327884Clytia hemisphaericaexon
TCONS_00053841-exon-scaffold_234-1510915933:326455..327013TCONS_00053841-exon-scaffold_234-1510915933:326455..327013Clytia hemisphaericaexon
TCONS_00053841-exon-scaffold_234-1491911889:330731..330984TCONS_00053841-exon-scaffold_234-1491911889:330731..330984Clytia hemisphaericaexon
TCONS_00053841-exon-scaffold_234-1491911889:327783..327884TCONS_00053841-exon-scaffold_234-1491911889:327783..327884Clytia hemisphaericaexon
TCONS_00053841-exon-scaffold_234-1491911889:326455..327013TCONS_00053841-exon-scaffold_234-1491911889:326455..327013Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053841-proteinTCONS_00053841-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:326455..330984 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.753776	0.637044	1.59313	2.11529	0.542138	0.535506	2.77808	2.72177	2.15966	0.786789	2.18921	1.23829	0.835522	1.87423	0.399485	0.979904	0.0377238	0.347991	1.76282	1.67697	0.145759	0.142192	0.460941	0.471446	0.269765	0.0963037	0	0	0.167327	0.284132
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
IPR002937Amino_oxidase
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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