TCONS_00053849 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053849
Unique Name	TCONS_00053849
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2205

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_234:430308..435524-

transcript sequence

>TCONS_00053849 ID=TCONS_00053849|Name=TCONS_00053849|organism=Clytia hemisphaerica|type=transcript|length=2205bp
TGATAAGACTGAGCATAAGAGACActcctaaaattttatcaggcccgggg
accttgttctcaggggggacctagaaccccagttGGAGCCATGTGCTTTT
ATCACTATTTGAAGTGTTTTGTGCTTAAAGAGTTCACTATCAGCAAAAAG
AGGTAAAAGAATCAGGGGTTAAAGAATCCTATATGCACTATACTGTAAAC
TGTATAGACTTTGTGCATTATTAcaataactttttgtttttggataggaa
atatgaaaataatatttctatTTGTATGTATTGGGCTGGCTTTAGCTTAC
CCACATCCTCTAAAGTCAGAACCATATCAGACCAAATATATTGGTCAATT
CATTGATCACTTTAACTTTTTGGGAAGTGCTGGACCAAATGGAAGATATC
AACAGCGTTATTTGATTTCAGATGCATATTTTGATGGAAAAGGACCCATT
CTCTTTTATACTGGGAATGAAGGAGATATTACTAATTTTTGGGACAACAC
CGGTTTTGTCTTTGCACTTGCTAAGAGATTCAAAGGCTTGATCTTATTTG
GAGAACATAGATATTATGGGAAATCTTTACCATTTGGTGACCAATCTTTC
AAAGGAGATAACATTGGCTTCCTCACAACTGAGCAAGCATTAGCAGATTT
CGCATACCTTGTCAAGCAAGTGAAAAAAGATCATTCTGCTCAAAATAACA
CAGTATTTGCTTTTGGTGGAAGcTATGGAGGTATGTTGACAGCATACATG
AGATACAAATATCCTGATATCATTGATGGTGGAGTTGCCAGCAGTGCTCC
ATTCATGACTGTTGCTGGAAACAGACCAAGATCAGAATTTTGGGAAGCTG
TCACAAACACATTCCATAAGGCAGACTCAACTTGTCCTACATCAGTTCAA
CAAGGATTTTCAGCACTGATCAAGCTTTTTGATTCTGGCGATGTTGGAAA
ACAAGTCATCCAAAGCACCTTCAACTTGTGTCCTGAGCAAATGAAAAACC
CTAACCTCAAGAATAATGTTTTGTTATGGGCTAGGAATGCATTCACCCTG
TTGGCTATGGTTGATTATCCTTATCCAGCTGATTTCATGGCAAAATTACC
AGGGCATCCGGTCAATGTTGCTTGTAGTTATATTAAAGGTGCCAACAAAC
TATCTGGACTTGCTAACATCACTTctTTGTTATATGGACCAGATGCAAAG
TGTCACGACACTTTCACTGAGTATGTCTATTGTGCTGACCCAACTGGCTG
TGGAACTGGACCTGATGCTCCACCATGGGACTACCAAGCTTGTACTGAAT
TGGCACTGCCAGGGAGCAGCACTAATGAAACTGACATGTTTCCACCATTA
CAATTTACTTTGGAGATGCGACAGCACTATTGTGCCGGTAAGTTTGGTCT
TGGCATGTCCAGAAATGACTGGTACGGAACTCACTATTTTGGTACACTTG
ATGAAATCAAACATGCATCTCGTTTGATCTTTCCAAATGGGGATTTGGAT
CCTTGGATGCCGGGAGGTGTGTTGGAAGACTTATCTGATGACCTTATTGC
CATTGTTATTGAAGGTGGAGCTCACCATCTTGATTTAAgAGAAGCAAATG
ATGCTGATCCACAATCTGTGATTGATGCTCGTGAAAAAATCGCAACCATC
CTCCAAAATTGGATGGAGCACCCTGAAAAGAAATGAACGAACACGGAATG
ATCAATTGTCATCAGTCATTTCTTAGTTTTAATTTATCATGGGGAATCAT
GGCTTAGCTCTAATCTAGAAGGCGGCTTTCTACCCTACCTAGCCTACTTG
CAAAAGTGGCCAGAAAGTTATTGCATTGACATTAGATGATCAACCAACTT
TCTGCCCACTTCATTCACAAGTAAGATTGGCAGGACtgaaagtgggctgt
ctaaaccAGAGTTATAGCAATTTCTTTGTTGATCAGACACACAAGCAAGT
CTTCAGAGTTTTAAGATATACAAGAAGTAAAGATTAAAGCATAGAGGTCC
TGATTCCCAAtgattcattttgactataaagACCTATGACTTGCTAATGA
ATTGGATACTAGgagctaaaaacaaaaaatgacaactttTATAGCCTATT
ATtgattgaaattgtttttgtttaaattgtttttgttaaaatttcctTTA
AATCTTGACAActttgattttaagattttcgtTTATGTCTAAAATTTAAC
ATTAC

Run BLAST on NCBI

transcript from alignment at scaffold_234:430308..435524-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053849 ID=TCONS_00053849|Name=TCONS_00053849|organism=Clytia hemisphaerica|type=transcript|length=5217bp|location=Sequence derived from alignment at scaffold_234:430308..435524- (Clytia hemisphaerica)
TGATAAGACTGAGCATAAGAGACACTCCTAAAATTTTATCAGGCCCGGGG
ACCTTGTTCTCAGGGGGGACCTAGAACCCCAGTTGGAGCCATGTGCTTTT
ATCACTATTTGAAGTGTTTTGTGCTTAAAGAGTTCACTATCAGCAAAAAG
AGGTAAAAGAATCAGGGGTTAAAGAATCCTATATGCACTATACTGTAAAC
TGTATAGACTTTGTGCATTATTACAATAACTTTTTGTTTTTGGATAGGAA
ATATGAAAATAATATTTCTATTTGTATGTATTGGGCTGGCTTTAGCTTAC
CCACATCCTCTAAAGTCAGAACCATATCAGACCAAATATATTGGTCAATT
CATTGATCACTTTAACTTTTTGGGAAGTGCTGGACCAAATGGAAGATATC
AACAGCGTTATTTGATTTCAGGTATATATAGAAGATAGTTGGACAGAAAT
TCTTCGAATTTCTTCACATATATATAATTTTTCAGCATTTATACGATACA
AAGGAAAATATCTCATTTGCATAATTTTTCCTGTGTTATTTTGAAAGGAA
CAATCAATTTTCATAATCTTTTTATAATCTTTACTCATCATCCTTATATT
ATTTCAGTTTAAAAATGTATGGCAAATAATATTTATGAAAATTGAACTGG
CTTGTTCTTTTTCAGTGTAAATTTTGCAACTATTTGTGTTATTGTAATGA
GAAACCACATCCTGTATAATTATTTTCTATTGATCTTTTTAGATGCATAT
TTTGATGGAAAAGGACCCATTCTCTTTTATACTGGGAATGAAGGAGATAT
TACTAATTTTTGGGACAACACCGGTTTTGTCTTTGCACTTGCTAAGAGAT
TCAAAGGCTTGATCTTATTTGGAGAACATGTATGTCACTGAAACCTATTG
ATATTTGAATAACTTGTCTTTGTTCATCTGAATTCCTTTTTTAATGTCTA
TACTTAGCTTGATCTTTAAAAAAAAGAGAAAACCAATTATATGATATTAT
TTTCACCTTGAACTCCAAAGCTTTTATTTTTTTCAAATTTTTAAGTTAAA
ATTGAATCTCTGATAATAATAATTCCAGTTTTTCTTGTGTAACTTATTTT
CCTGTGTTTCTATCTACTTGTATGTTTTATGGGGAAAAAGAATGCTGCTA
TTATCATTTGATTCTTCCCGAAATGTTTTGGTCCATTCTCAAGGGGAATG
ATATTTCTTATATCTATTTATAGAGATATTATGGGAAATCTTTACCATTT
GGTGACCAATCTTTCAAAGGAGATAACATTGGCTTCCTCACAACTGAGCA
AGCATTAGCAGATTTCGCATACCTTGTCAAGCAAGTGAAAAAAGATCATT
CTGCTCAAAATAACACAGTATTTGCTTTTGGTGGAAGGTATGTGATTGTT
TTTTGCTATTTAATAACTCAACTCTTTGTTCTCTTTTTACTACTACAGAC
AGTTAGTTTTGAAACTAACGAATATTTAAATCACTCTTAACTATCAAAGT
TTGTGGAAAATTGCTAAACTTAGATTTTAAAGAAATTACCTTCAATTCTA
AAACTGAGTTCCAGTAGTTTTAGTCTTGAAGTTTGAGTAGTAGTCTGGTT
TTACTTCAACGATTTAAGCTTTGCAACCAAAGTCCTGTTAAATTTAATTT
TCAGCTATGGAGGTATGTTGACAGCATACATGAGATACAAATATCCTGAT
ATCATTGATGGTGGAGTTGCCAGCAGTGCTCCATTCATGACTGTTGCTGG
AAACAGACCAAGATCAGAATTTTGGGAAGCTGTCACAAACGTATGATGAT
ATTTCTACATGATAATTATTCAAAAATATTCAAAATTCATACCATTCATA
TATTAAGTTTATAACCAGTCTAAATCATTTGAAGCATTTGATCACGCTCT
CTGAGGAGTGCAATCAACCATACACCATAAATTAAGACTTTTCTATTAAA
AATACTGTGTGATAAACTAGCAAAACTTTTAGGAGTGTGATTGACACACG
TCTTGAGATTTTAAATAAAAAAACCCTGTATACTATACAAATAATACCAA
TATGCTCTTCATTTTTCTAGACATTCCATAAGGCAGACTCAACTTGTCCT
ACATCAGTTCAACAAGGATTTTCAGCACTGATCAAGCTTTTTGATTCTGG
CGATGTTGGAAAACAAGTCATCCAAAGCACCTTCAACTTGTGTCCTGAGC
AAATGAAAAACCCTAACCTCAAGAATAATGTTTTGTTATGGGCTAGGAAT
GCATTCACCCTGTTGGCTATGGTTGATTATCCTTATCCAGCTGATTTCAT
GGCAAAATTACCAGGGCATCCGGTCAATGTTGCTTGTAGTTATATTAAAG
GTGCCAACAAACTATCTGGACTTGCTAACATCACTTGTAAGTAAAAGCTA
TATCTGGAGAATATAAAGTGCTAAATACCCACTTTGAAAGGTCTGCTAGC
TATCCTACCTAGTTCCTAGTCTGGAAAACAAGGCATTGTACCCTGGAGAT
ATTTTAAAATCAAACTTTCAATTTCAAAGACCTAGTTCAAAAGCTAATAA
ATGAAGATATTGATTGATATTGTAAAATGGCGCAGTAGTGTAGTGGTCAT
CATTCTTGACTTTCGTGCTGGAGGTCAGGGTGCGATTCCCACTAGGTGCT
GCGATTCACTTGGCAAGTGAATGTACCTTGGCCCGGGTCAACCCATACCA
TGTGAGGGAAATAGGGTACCATCACTCTGATACAAGAGTATCGGGAGATA
TGCTGGACATTAAATGTGGTGTGGTGATGGTTCTCATATGTTCAGTACCT
GCGAGAACGCAAGGTTCTCCCGTACTGTTCGAGTATCATAATCGATACAG
CACGGCTCTGATGTGTCGCGAGCACAGAGTACAATGTCTGGTAAGCGCTG
TGATTTCCCCATCTAGGGGTAGGAAACTATCCCAGGATAGGGCCCGGTCC
GATGATATCGGAGGGTCAGCTTCTCTCTCTTCACTCTCATTGTAAAATGT
AATGATAAATAGTCCTCATATACTTCTTTGGCCCTCTTTAGGCGTGTTTA
CACAGACAATCTCTCTAATGATAACATGGTTGATAAATGTCCTAATCAAG
TTAAGTTATATCCAAGAAAGAGTCTTAACTTAACTTTTCATCTTTAAAAA
AAAATTGATGCTAATCTAAACAATTGCATTTTTGTCTTTTTAGCTTTGTT
ATATGGACCAGATGCAAAGTGTCACGACACTTTCACTGAGTATGTCTATT
GTGCTGACCCAACTGGCTGTGGAACTGGACCTGATGCTCCACCATGGGAC
TACCAAGTAAATGATTTGATTTACATTAAGGAAACTTATTTTGGCGAGAA
CTAATCTTGGTGAGTTTAGACGAAATTCACCAAAATTAGTTATGACTAAA
ATTAGATATTATACTCACTCGCCAAATTAAGTTCTTGCCAAAATAATCCC
TAAGTTTCATCAAAATTGCTTAAAATTGGGCAAAAGAGGACATTTAGTCA
GTCATCCCCCAAAACTAATTCTAACCAAATTAAAAAGTTTGACTATTTGT
CTATATTACATTATTAGTTTTCACAAAAATAAGCTCCCTTATTAAAAATG
TATCTTTAGTCTCGTTGAATAATGTATTCACTGGAATTCGGTATATACAT
ATTTCTTTCATTGACCTCAGTGACTTGCCATCCAAAAGAAAAACTAACTT
TAAATTTCAACATGGATTGACTTGCAAGCTGAAATATAAAGATCTATGTG
AAGAAGTATCCAAAAAATTAATACTTTTATGATGATAGGCTTGTACTGAA
TTGGCACTGCCAGGGAGCAGCACTAATGAAACTGACATGTTTCCACCATT
ACAATTTACTTTGGAGATGCGACAGCACTATTGTGCCGGTAAGTTTGGTC
TTGGCATGTCCAGAAATGACTGGTACGGAACTCACTATTTTGGTACACTT
GATGAAATCAAACATGCATCTCGTTTGATCTTTCCAAATGGGGATTTGGA
TCCTTGGATGCCGGGAGGTGTGTTGGAAGACTTATCTGATGACCTTATTG
CCATTGTTATTGAAGGTGGAGCTCACCATCTTGATTTAAGGTAAAGTAAA
AATATTATATGTTTTATCCTACTCACCTTGATAATTTTGTTGAGGAATAT
CAAAACCATTGACAGAATTAACAATTGACAAGTTTTTAAAGAACTGTAAA
TTTTAATTCTCTTAAGACCACTGATATATAAAACATTAGATAGAGCTACT
CTGTATTTCCCAAGCAACGACATGGAAAAAAAATAATCAGCCATCTTTGC
TGAAAGTAGGTCACAGTAGGTTTTCTTTGTTGAAACTTTTTGACACTGCA
GTGACTTCAAAATTTCAAGGATCTCGCAAGCTTAATTTTGACGTCACCTC
ATCGTCCAAGATAGCGAATTATTTTGCTTCAAATAGGGTAGGAAAAGCTC
TATTTAGTGTTTTAAATAAGATATTTATACTAAAGACCAATCAAATTACA
GGTGAATTTTCTTGAAATTAGCACAAATTTACTACAGGCCCTTTGGGTGT
ATTTTTTGGAGGACATTTTAATTTTTAAATCAACATAACATTTTCTTACA
GAGAAGCAAATGATGCTGATCCACAATCTGTGATTGATGCTCGTGAAAAA
ATCGCAACCATCCTCCAAAATTGGATGGAGCACCCTGAAAAGAAATGAAC
GAACACGGAATGATCAATTGTCATCAGTCATTTCTTAGTTTTAATTTATC
ATGGGGAATCATGGCTTAGCTCTAATCTAGAAGGCGGCTTTCTACCCTAC
CTAGCCTACTTGCAAAAGTGGCCAGAAAGTTATTGCATTGACATTAGATG
ATCAACCAACTTTCTGCCCACTTCATTCACAAGTAAGATTGGCAGGACTG
AAAGTGGGCTGTCTAAACCAGAGTTATAGCAATTTCTTTGTTGATCAGAC
ACACAAGCAAGTCTTCAGAGTTTTAAGATATACAAGAAGTAAAGATTAAA
GCATAGAGGTCCTGATTCCCAATGATTCATTTTGACTATAAAGACCTATG
ACTTGCTAATGAATTGGATACTAGGAGCTAAAAACAAAAAATGACAACTT
TTATAGCCTATTATTGATTGAAATTGTTTTTGTTTAAATTGTTTTTGTTA
AAATTTCCTTTAAATCTTGACAACTTTGATTTTAAGATTTTCGTTTATGT
CTAAAATTTAACATTAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033981	XLOC_033981	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_234	supercontig	scaffold_234:430308..435524 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
170.214	175.003	193.885	202.451	75.0155	56.0057	54.3107	58.3025	83.3626	72.9128	65.847	68.1176	48.3823	47.7655	102.527	101.184	75.9068	70.2172	95.3214	113.304	40.5933	40.4063	68.9511	68.6837	48.9589	48.0935	20.5702	17.6685	49.8581	41.7297

Blast

[Close]

BLAST of TCONS_00053849 vs. Swiss-Prot (Human)
Match: DPP2 (Dipeptidyl peptidase 2 OS=Homo sapiens GN=DPP7 PE=1 SV=3)

HSP 1 Score: 400.979 bits (1029), Expect = 7.219e-131
Identity = 207/457 (45.30%), Postives = 288/457 (63.02%), Query Frame = 1

Query:  325 YQTKYIGQFIDHFNFLGSAGPNGRYQQRYLISDAYF-DGKGPILFYTGNEGDITNFWDNTGFVFALAKRFKGLILFGEHRYYGKSLPFGDQSFKGDNIGFLTTEQALADFAYLVKQVKKDHSAQNNTVFAFGGSYGGMLTAYMRYKYPDIIDGGVASSAPFMTVAGNRPRSEFWEAVTNTFHKADSTCPTSVQQGFSALIKLFDSGDVGKQVIQSTFNLCPEQMKNPNLKNNVLLWARNAFTLLAMVDYPYPADFMAKLPGHPVNVAC-SYIKGANKLSGLANITSLLYGPDAK--CHDTFTEYVYCADPTGCGTGPDAPPWDYQACTELALPGSSTNETDMFPPLQFTLEMRQHYCAGKFGLGMSRNDWYGTHYFGTLDEIKHASRLIFPNGDLDPWMPGGVLEDLSDDLIAIVIEGGAHHLDLREANDADPQSVIDAREKIATILQNWMEHPEKK 1683
            +Q ++  Q +DHFNF      N  + QR+L+SD ++  G+GPI FYTGNEGD+  F +N+ FV  LA     L++F EHRYYGKSLPFG QS +  +   LT EQALADFA L++ +++D  AQ+    AFGGSYGGML+AY+R KYP ++ G +A+SAP + VAG    ++F+  VT  F      C   V++ F  +  LF  G      ++  F  C       +L   + ++ARNAFT+LAM+DYPYP DF+  LP +PV V C   +  A +++GL  +  L+Y       C+D +  Y  CADPTGCGTGPDA  WDYQACTE+ L  +S N TDMFP L FT E+RQ YC   +G+   R DW  T ++G   +++ AS +IF NG+LDPW  GG+  +LS  +IA+ I+GGAHHLDLR ++  DP SV++AR+  ATI+  W++   ++
Sbjct:   31 FQERFFQQRLDHFNF--ERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQG--AYDTVRWEFGTCQPLSDEKDL-TQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGV-WPRPDWLLTSFWG--GDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARRE 479

The following BLAST results are available for this feature:

BLAST of TCONS_00053849 vs. Swiss-Prot (Human)

BLAST of TCONS_00053849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DPP2	7.219e-131	45.30	Dipeptidyl peptidase 2 OS=Homo sapiens GN=DPP7 PE=...	[more]

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TCONS_00053849 (transcript) - C. hemisphaerica