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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053851 ID=TCONS_00053851|Name=TCONS_00053851|organism=Clytia hemisphaerica|type=transcript|length=2856bpRun BLAST on NCBI protein sequence of TCONS_00053851-protein >TCONS_00053851-protein ID=TCONS_00053851-protein|Name=TCONS_00053851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp MAVIAATCSAAINGHPHPRSSACCLCCIIIIGNMKIIFLFVCIGLALAYPRun BLAST on NCBI transcript from alignment at scaffold_234:430308..439651- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053851 ID=TCONS_00053851|Name=TCONS_00053851|organism=Clytia hemisphaerica|type=transcript|length=9344bp|location=Sequence derived from alignment at scaffold_234:430308..439651- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_234:430308..439651- >TCONS_00053851 ID=TCONS_00053851|Name=TCONS_00053851|organism=Clytia hemisphaerica|type=CDS|length=13797bp|location=Sequence derived from alignment at scaffold_234:430308..439651- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053851 vs. Swiss-Prot (Human)
Match: DPP2 (Dipeptidyl peptidase 2 OS=Homo sapiens GN=DPP7 PE=1 SV=3) HSP 1 Score: 401.749 bits (1031), Expect = 9.732e-129 Identity = 207/457 (45.30%), Postives = 288/457 (63.02%), Query Frame = 1
Query: 976 YQTKYIGQFIDHFNFLGSAGPNGRYQQRYLISDAYF-DGKGPILFYTGNEGDITNFWDNTGFVFALAKRFKGLILFGEHRYYGKSLPFGDQSFKGDNIGFLTTEQALADFAYLVKQVKKDHSAQNNTVFAFGGSYGGMLTAYMRYKYPDIIDGGVASSAPFMTVAGNRPRSEFWEAVTNTFHKADSTCPTSVQQGFSALIKLFDSGDVGKQVIQSTFNLCPEQMKNPNLKNNVLLWARNAFTLLAMVDYPYPADFMAKLPGHPVNVAC-SYIKGANKLSGLANITSLLYGPDAK--CHDTFTEYVYCADPTGCGTGPDAPPWDYQACTELALPGSSTNETDMFPPLQFTLEMRQHYCAGKFGLGMSRNDWYGTHYFGTLDEIKHASRLIFPNGDLDPWMPGGVLEDLSDDLIAIVIEGGAHHLDLREANDADPQSVIDAREKIATILQNWMEHPEKK 2334
+Q ++ Q +DHFNF N + QR+L+SD ++ G+GPI FYTGNEGD+ F +N+ FV LA L++F EHRYYGKSLPFG QS + + LT EQALADFA L++ +++D AQ+ AFGGSYGGML+AY+R KYP ++ G +A+SAP + VAG ++F+ VT F C V++ F + LF G ++ F C +L + ++ARNAFT+LAM+DYPYP DF+ LP +PV V C + A +++GL + L+Y C+D + Y CADPTGCGTGPDA WDYQACTE+ L +S N TDMFP L FT E+RQ YC +G+ R DW T ++G +++ AS +IF NG+LDPW GG+ +LS +IA+ I+GGAHHLDLR ++ DP SV++AR+ ATI+ W++ ++
Sbjct: 31 FQERFFQQRLDHFNF--ERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQG--AYDTVRWEFGTCQPLSDEKDL-TQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGV-WPRPDWLLTSFWG--GDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARRE 479 The following BLAST results are available for this feature:
BLAST of TCONS_00053851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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