TCONS_00053866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053866
Unique NameTCONS_00053866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053866 ID=TCONS_00053866|Name=TCONS_00053866|organism=Clytia hemisphaerica|type=transcript|length=564bp
GCCAATTTTCATGGCCTTTTAGCAACCAATAGATACTGCCACCCctgaaa
ttttggtaaaatcagctttctagtgggaaaacactggaaaaagtgtCCAT
TATAGCCACCAACTGGCGCTGTCATGCCTTTCTAAAATTGACCTGATTGC
GGTAACTCCACTTTTCAATAATGTTGCAGCAAGGGTGATTAAAGCATCAA
GCTCCTGCCTCAAAACGTCACTATTTTTTGGTCTGCTTACCATACCTTAG
GTATCGCTGCAATGCttcttttcattgaatttaaataAAAGACTGTTGGA
ATATGGTGTTCCAAGTAAGGAGCTACTTTCCCAAGAACAAGGAGTTAACA
TATTGGAGAAAAGTCGAAAGGCCTTGTACTTTGAAGCTTTGATGATTTGA
TGATATTGATTTGATAACAGGGGTCAATAATTATGTTACAATAtcatttt
gatcttttttttaaagatttcagtCATAACTTATTTGAGagtaaaaattt
cctttgtgttttttctttattcaaaagGCTCTGATAGGATCTCTGGAAGA
AAACATgattcttg
Run BLAST on NCBI

transcript from alignment at scaffold_234:401158..401721

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053866 ID=TCONS_00053866|Name=TCONS_00053866|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at scaffold_234:401158..401721 (Clytia hemisphaerica)
caagaatcATGTTTTCTTCCAGAGATCCTATCAGAGCcttttgaataaag
aaaaaacacaaaggaaatttttactCTCAAATAAGTTATGactgaaatct
ttaaaaaaaagatcaaaatgaTATTGTAACATAATTATTGACCCCTGTTA
TCAAATCAATATCATCAAATCATCAAAGCTTCAAAGTACAAGGCCTTTCG
ACTTTTCTCCAATATGTTAACTCCTTGTTCTTGGGAAAGTAGCTCCTTAC
TTGGAACACCATATTCCAACAGTCTTTtatttaaattcaatgaaaagaaG
CATTGCAGCGATACCTAAGGTATGGTAAGCAGACCAAAAAATAGTGACGT
TTTGAGGCAGGAGCTTGATGCTTTAATCACCCTTGCTGCAACATTATTGA
AAAGTGGAGTTACCGCAATCAGGTCAATTTTAGAAAGGCATGACAGCGCC
AGTTGGTGGCTATAATGGacactttttccagtgttttcccactagaaagc
tgattttaccaaaatttcagGGGTGGCAGTATCTATTGGTTGCTAAAAGG
CCATGAAAATTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033995XLOC_033995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053866-exon-scaffold_234-1491911889:401158..401721TCONS_00053866-exon-scaffold_234-1491911889:401158..401721Clytia hemisphaericaexon
TCONS_00053866-exon-scaffold_234-1510915933:401158..401721TCONS_00053866-exon-scaffold_234-1510915933:401158..401721Clytia hemisphaericaexon
TCONS_00053866-exon-scaffold_234-1575043694:401158..401721TCONS_00053866-exon-scaffold_234-1575043694:401158..401721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:401158..401721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.199875	0.682182	1.471	1.54985	0.134771	0	0	0	0.0842152	0	0	0.0665577	0	0	0.0567477	0	0	0.0768957	0	0	0	0	0	0.104175	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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