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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053868 ID=TCONS_00053868|Name=TCONS_00053868|organism=Clytia hemisphaerica|type=transcript|length=1242bp
TGAATCCTCTCTCCTTTCTCTGGGACCTCGTCAAACGGGCACAAGTCGCC
ATTATCATTGTTGATTACTGTCAGCGCGTATGACTTAACTGTAGTAAGAG
AGATCTCTTTCAGGTTGTTATTTTGACATGGATTTCCTGGCCGGCGACGG
CAAATTTGCGTTAAGATGAATCTACGAAAAGTTGGGAATTTCCCAGCGTA
AATTAAACAATTCATAACACTATTTAAAACAACTAGATAGGACAACCAAA
AACCAACTTGATcataaatttgaatttgatgCATTTTTTCCTTCGTTGTG
TAGACGTCAAAGCGAAACATTATAACAGCTATAACATATAACATGTTATA
TGGTAGTGAGCATAGTACGAAAACTGCAAATGCTATTAGTAATGTTTGTG
TTGTCATTTTCGATTTTAATCGAATACTTTTCGATTTGTGTTTATCATTA
AAACCTTTAAGAGTACTGTTCATGTTAAGTTCTTGTTTCTTAAAAGCATT
CCGAATTGCTAAATAAGTGAGCCCCATTAGCAAAATCGGGATAACACTTT
GAGATATTAATCCGATAATTCCAAGCACGAGGTGTTGGTCCCTGTTCCAG
ACGGGAACACATTGGGAGCCGCGAACGTCAGTATAAAGAAAAAGTGGCAA
AGCAACGATGGTGGACCCAATCCACATAAACGTACAAATCAAATTGACGT
GTTTTCTACTATAACGTGGTTTCAAGGGATTGCCAATAGCTCTGTATCTC
TCGTATGCGATTGCGCATAAAATCCAAGCTGAGACATTGACAGTTATGAA
TCCGATTGGCGTAATGACTTTACAGAGGAATGGACCCAAGTACCAATTCC
CATTATTTGACATGAGATAAAACGTTAAGACGGGGGTTATGATGCACACG
ATGCAATCAGCGATGGCTAACTGAACGATAAACCAACGAAAGGTTGTATG
ACGTTTGATTTTAAATGCAAAGAAAATAACAACCAGAGAGTTGGCGATAA
TACCGAAAATCAAAACGAAGGAGTAAAGAAAAATGTTTAACCATGATTGA
TAACTGCTATCCATAATGGCACTTTCTTTTCATCCGATAACAAACCTTTT
AAGGTATTTTTGTTTCTGAGTTGTAATGTATAAAATCTAGAAAGTATAAT
TGAAGTATATAAAAGTTGAATCTCCTTGGAGAGGACTTTCAGCTTGAAAG
GTGCATTTGAGCAATGTCACAATCTGAATTTGAAATCCGACA Run BLAST on NCBI protein sequence of TCONS_00053868-protein >TCONS_00053868-protein ID=TCONS_00053868-protein|Name=TCONS_00053868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MDSSYQSWLNIFLYSFVLIFGIIANSLVVIFFAFKIKRHTTFRWFIVQLA
IADCIVCIITPVLTFYLMSNNGNWYLGPFLCKVITPIGFITVNVSAWILC
AIAYERYRAIGNPLKPRYSRKHVNLICTFMWIGSTIVALPLFLYTDVRGS
QCVPVWNRDQHLVLGIIGLISQSVIPILLMGLTYLAIRNAFKKQELNMNS
TLKGFNDKHKSKSIRLKSKMTTQTLLIAFAVFVLCSLPYNMLYVIAVIMF
RFDVYTTKEKMHQIQIYDQVGFWLSYLVVLNSVMNCLIYAGKFPTFRRFI
LTQICRRRPGNPCQNNNLKEISLTTVKSYALTVINNDNGDLCPFDEVPEK
GERI Run BLAST on NCBI transcript from alignment at scaffold_234:465866..467107 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053868 ID=TCONS_00053868|Name=TCONS_00053868|organism=Clytia hemisphaerica|type=transcript|length=1242bp|location=Sequence derived from alignment at scaffold_234:465866..467107 (Clytia hemisphaerica)
TGTCGGATTTCAAATTCAGATTGTGACATTGCTCAAATGCACCTTTCAAG
CTGAAAGTCCTCTCCAAGGAGATTCAACTTTTATATACTTCAATTATACT
TTCTAGATTTTATACATTACAACTCAGAAACAAAAATACCTTAAAAGGTT
TGTTATCGGATGAAAAGAAAGTGCCATTATGGATAGCAGTTATCAATCAT
GGTTAAACATTTTTCTTTACTCCTTCGTTTTGATTTTCGGTATTATCGCC
AACTCTCTGGTTGTTATTTTCTTTGCATTTAAAATCAAACGTCATACAAC
CTTTCGTTGGTTTATCGTTCAGTTAGCCATCGCTGATTGCATCGTGTGCA
TCATAACCCCCGTCTTAACGTTTTATCTCATGTCAAATAATGGGAATTGG
TACTTGGGTCCATTCCTCTGTAAAGTCATTACGCCAATCGGATTCATAAC
TGTCAATGTCTCAGCTTGGATTTTATGCGCAATCGCATACGAGAGATACA
GAGCTATTGGCAATCCCTTGAAACCACGTTATAGTAGAAAACACGTCAAT
TTGATTTGTACGTTTATGTGGATTGGGTCCACCATCGTTGCTTTGCCACT
TTTTCTTTATACTGACGTTCGCGGCTCCCAATGTGTTCCCGTCTGGAACA
GGGACCAACACCTCGTGCTTGGAATTATCGGATTAATATCTCAAAGTGTT
ATCCCGATTTTGCTAATGGGGCTCACTTATTTAGCAATTCGGAATGCTTT
TAAGAAACAAGAACTTAACATGAACAGTACTCTTAAAGGTTTTAATGATA
AACACAAATCGAAAAGTATTCGATTAAAATCGAAAATGACAACACAAACA
TTACTAATAGCATTTGCAGTTTTCGTACTATGCTCACTACCATATAACAT
GTTATATGTTATAGCTGTTATAATGTTTCGCTTTGACGTCTACACAACGA
AGGAAAAAATGcatcaaattcaaatttatgATCAAGTTGGTTTTTGGTTG
TCCTATCTAGTTGTTTTAAATAGTGTTATGAATTGTTTAATTTACGCTGG
GAAATTCCCAACTTTTCGTAGATTCATCTTAACGCAAATTTGCCGTCGCC
GGCCAGGAAATCCATGTCAAAATAACAACCTGAAAGAGATCTCTCTTACT
ACAGTTAAGTCATACGCGCTGACAGTAATCAACAATGATAATGGCGACTT
GTGCCCGTTTGACGAGGTCCCAGAGAAAGGAGAGAGGATTCA Coding sequence (CDS) from alignment at scaffold_234:465866..467107 >TCONS_00053868 ID=TCONS_00053868|Name=TCONS_00053868|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_234:465866..467107 (Clytia hemisphaerica)
ATGGATAGCAGTTATCAATCATGGTTAAACATTTTTCTTTACTCCTTCGT
TTTGATTTTCGGTATTATCGCCAACTCTCTGGTTGTTATTTTCTTTGCAT
TTAAAATCAAACGTCATACAACCTTTCGTTGGTTTATCGTTCAGTTAGCC
ATCGCTGATTGCATCGTGTGCATCATAACCCCCGTCTTAACGTTTTATCT
CATGTCAAATAATGGGAATTGGTACTTGGGTCCATTCCTCTGTAAAGTCA
TTACGCCAATCGGATTCATAACTGTCAATGTCTCAGCTTGGATTTTATGC
GCAATCGCATACGAGAGATACAGAGCTATTGGCAATCCCTTGAAACCACG
TTATAGTAGAAAACACGTCAATTTGATTTGTACGTTTATGTGGATTGGGT
CCACCATCGTTGCTTTGCCACTTTTTCTTTATACTGACGTTCGCGGCTCC
CAATGTGTTCCCGTCTGGAACAGGGACCAACACCTCGTGCTTGGAATTAT
CGGATTAATATCTCAAAGTGTTATCCCGATTTTGCTAATGGGGCTCACTT
ATTTAGCAATTCGGAATGCTTTTAAGAAACAAGAACTTAACATGAACAGT
ACTCTTAAAGGTTTTAATGATAAACACAAATCGAAAAGTATTCGATTAAA
ATCGAAAATGACAACACAAACATTACTAATAGCATTTGCAGTTTTCGTAC
TATGCTCACTACCATATAACATGTTATATGTTATAGCTGTTATAATGTTT
CGCTTTGACGTCTACACAACGAAGGAAAAAATGcatcaaattcaaattta
tgATCAAGTTGGTTTTTGGTTGTCCTATCTAGTTGTTTTAAATAGTGTTA
TGAATTGTTTAATTTACGCTGGGAAATTCCCAACTTTTCGTAGATTCATC
TTAACGCAAATTTGCCGTCGCCGGCCAGGAAATCCATGTCAAAATAACAA
CCTGAAAGAGATCTCTCTTACTACAGTTAAGTCATACGCGCTGACAGTAA
TCAACAATGATAATGGCGACTTGTGCCCGTTTGACGAGGTCCCAGAGAAA
GGAGAGAGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053868-exon-scaffold_234-1491911889:465866..467107 | TCONS_00053868-exon-scaffold_234-1491911889:465866..467107 | Clytia hemisphaerica | exon |
| TCONS_00053868-exon-scaffold_234-1510915933:465866..467107 | TCONS_00053868-exon-scaffold_234-1510915933:465866..467107 | Clytia hemisphaerica | exon |
| TCONS_00053868-exon-scaffold_234-1575043694:465866..467107 | TCONS_00053868-exon-scaffold_234-1575043694:465866..467107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:465866..467107 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00053868 vs. Swiss-Prot (Human)
Match: GALR2 (Galanin receptor type 2 OS=Homo sapiens GN=GALR2 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.299e-18 Identity = 83/350 (23.71%), Postives = 149/350 (42.57%), Query Frame = -2
Query: 24 FLYSFVLIFGIIANSLVVIFFAFKIKRHTTFRWFIVQLAIADC--IVCIITPVLTFYLMSNNGNWYLGPFLCKVITPIGFITVNVSAWILCAIAYERYRAIGNPLKPRYSRKHVNLICT--FMWIGSTIVALPLFLYTDVRGSQ------CVPVWNRDQHLVLGIIGLISQSVIPILLMGLTYLAIRNAFKKQELNMNSTLKGFNDKHKSKSIRLKSKMTTQTLLIAFAVFVLCSLPYNMLYVIAVIMFRFDVYTTKEKMHQIQIYDQVGFWLSYLVV-LNSVMNCLIYAGKFPTFR---RFILTQICRRRPGNPCQNNNLKEISLTTVKSYALTVINNDNGDLCPFDEV 1031
L++ + + G + N+LV+ + +T FI+ L +AD I+C + T Y + W G LCK + + F+T++ S++ L A++ +RY AI PL R R N + +W S + + P Y R SQ C P W+ + + I + ++P+L++GLTY + + + R + T+ +LI A+F LC +P++ L ++ F + + ++I LS+LV NS +N ++YA FR R I + R PG + +++ +V+ ++ DL E
Sbjct: 30 LLFALIFLVGTVGNTLVLAVLLRGGQAVSTTNLFILNLGVADLCFILCCVPFQATIYTLDG---WVFGSLLCKAVHFLIFLTMHASSFTLAAVSLDRYLAIRYPLHSRELRTPRNALAAIGLIWGLSLLFSGPYLSY--YRQSQLANLTVCHPAWSAPRRRAMDICTFVFSYLLPVLVLGLTY----------ARTLRYLWRAVDPVAAGSGARRAKRKVTRMILIVAALFCLCWMPHHAL----ILCVWFGQFPLTRATYALRI-------LSHLVSYANSCVNPIVYALVSKHFRKGFRTICAGLLGRAPGRAS-----GRVCAAARGTHSGSVLERESSDLLHMSEA 348
The following BLAST results are available for this feature:
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