TCONS_00053874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053874
Unique NameTCONS_00053874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053874 ID=TCONS_00053874|Name=TCONS_00053874|organism=Clytia hemisphaerica|type=transcript|length=435bp
AGTATGTCGAAAACTTGAGCTCTTACCTCAGTATCGCACGTTGTTGCCCT
TAGACAACTATTaaagatcttagaaatgttATACATGGAATTGTGGGTAA
GAGGGATGATAGTAAATCACTAACACTGGAACTCAACTCTCCTTTACAAG
GTCAAGGGGATGAAACAATACAGTCAAAAAAACTTGTTATATTGGGGAGC
AGTTAAGTCCAAAGACTTGTGATATTGGGGAGCATGTTATTGCCTTTTGG
CATGAGGGTATTggtaatgagacaaaatgacatttAAGAGTAGTAGAAAA
GGTTCAACCAGTAAAAGGTTCATACATGACACGAACTGATAAAAGCAGAC
ACAACTGGACATTccctgaaaaagttgaaataattaagACATCTGTCGAC
CAAGTGATTGCGACTAAAATTTAAGTCCAATATCT
Run BLAST on NCBI

transcript from alignment at scaffold_234:538726..539160

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053874 ID=TCONS_00053874|Name=TCONS_00053874|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at scaffold_234:538726..539160 (Clytia hemisphaerica)
AGATATTGGACTTAAATTTTAGTCGCAATCACTTGGTCGACAGATGTctt
aattatttcaactttttcagggAATGTCCAGTTGTGTCTGCTTTTATCAG
TTCGTGTCATGTATGAACCTTTTACTGGTTGAACCTTTTCTACTACTCTT
aaatgtcattttgtctcattaccAATACCCTCATGCCAAAAGGCAATAAC
ATGCTCCCCAATATCACAAGTCTTTGGACTTAACTGCTCCCCAATATAAC
AAGTTTTTTTGACTGTATTGTTTCATCCCCTTGACCTTGTAAAGGAGAGT
TGAGTTCCAGTGTTAGTGATTTACTATCATCCCTCTTACCCACAATTCCA
TGTATaacatttctaagatctttAATAGTTGTCTAAGGGCAACAACGTGC
GATACTGAGGTAAGAGCTCAAGTTTTCGACATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034003XLOC_034003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053874-exon-scaffold_234-1491911889:538726..539160TCONS_00053874-exon-scaffold_234-1491911889:538726..539160Clytia hemisphaericaexon
TCONS_00053874-exon-scaffold_234-1510915933:538726..539160TCONS_00053874-exon-scaffold_234-1510915933:538726..539160Clytia hemisphaericaexon
TCONS_00053874-exon-scaffold_234-1575043694:538726..539160TCONS_00053874-exon-scaffold_234-1575043694:538726..539160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:538726..539160 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.476906	4.05251	3.13503	2.11362	1.04342	3.04557	1.62877	1.76187	0.231172	1.60549	1.17327	1.4035	0.750648	1.01789	0.705346	0.931649	0.960314	0	0.420472	0.516047	0.676931	1.34863	0.506628	1.22062	2.64686	0.748117	0.647074	0	0.546825
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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