TCONS_00053881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053881
Unique NameTCONS_00053881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053881 ID=TCONS_00053881|Name=TCONS_00053881|organism=Clytia hemisphaerica|type=transcript|length=611bp
TCATCAAATGGGTATGTATTATTGCCTTTGCCCTCCTCCAAGCTATAAAT
GATTAAGTTTTATAGTAAAGAATAAGAAACGTTATAATGTAATTAAATTT
ACTACATGTTAGAATTAATGACTTATTTTCTGTCGTTTATATTGAACTTT
TTACTGTAGACTGTAGTTTGTAGCAAAACACATTAAATGTAACAAAAGAA
AGGGATCAGCATCACATATTCAAGGATTTTTTTCACTGTTTCTAGGTATC
AAAATCGGAATTTTATGACGCCAACGTCGGGGACTGCAGCTTCTGCATCG
AAAACCCAAATGAGATTCAGCGCCTCTCCAAATGGGTCGATTCTATCGCC
AGTATAtggtgACTTTCTAAATAGCCTCCTTGGCACTGATCAACGAAATG
ATTCAAGCATAATCGAAAACAATAGTCAATCATCTAGTCAAGAGCATCTT
GTTGGACAGCAATTTGACCCACAAGCTCAACTTTACCAACAAAATAAGCG
attgGTTGATAGAGTCACAGACTTGGAAGGGAAAGTGGCCACATTGATTG
GTGTTGTCAACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCA
ACCAACCGGGT
Run BLAST on NCBI

transcript from alignment at scaffold_235:75687..77320-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053881 ID=TCONS_00053881|Name=TCONS_00053881|organism=Clytia hemisphaerica|type=transcript|length=1634bp|location=Sequence derived from alignment at scaffold_235:75687..77320- (Clytia hemisphaerica)
TCATCAAATGGGTATGTATTATTGCCTTTGCCCTCCTCCAAGCTATAAAT
GATTAAGTTTTATAGTAAAGAATAAGAAACGTTATAATGTAATTAAATTT
ACTACATGTTAGAATTAATGACTTATTTTCTGTCGTTTATATTGAACTTT
TTACTGTAGACTGTAGTTTGTAGCAAAACACATTAAATGTAACAAAAGAA
AGGGATCAGCATCACATATTCAAGGATTTTTTTCACTGTTTCTAGGTATC
AAAATCGGAATTTTATGACGCCAACGTCGGGGACTGCAGCTTCTGCATCG
AAAACCCAAATGAGGTATGATAGCTGTATAATTAAGAATCGATTTATCGA
CCACTAATTGCTTTAGATAAGTTTTAGATAAGGCCTCAATATGTGGTGTG
TGAAAGACCATGAATATCGCCATGAGGAGAGCCATTTCCGGGAGTCAGCT
GTATATACTTTTAACACTTAATACATTTTGTTTAAACGTCCTCTCTTTCA
GATTCAGCGCCTCTCCAAATGGGTCGATTCTATCGCCAGTATAGTAAGTT
CTAATCTAGTTTCAAGTTTTGAGTCTTATGAGAATGGGTCACAATGGAAC
CGAAATAGACTTTGCTTCCTAACTTCCAATCTTGATCTTTTCCAACCTTG
CAAGAAACATCATGGCCTGGCCTTAATCTAAGTATATATCACTAAAACNT
GAGAATGGGTCACAATGGAACCGAAATAGACTTTGCTTCCTAACTTCCAA
TCTTGATCTTTTCCAACCTTGCAAGAAACATCATTTTGCAGACTGGCCTT
AATCTAACTATATATCACTAAAACATGGTTAGAAATCATTTAACTTTGGT
ATAATTGTAAACCTTGTATATTTGGAAAATTTCTTGTTAAAAAGAATTTA
GATCCCTTCATATTGTAACATAACGATGATTGTAAATTTTTTTTTCAGTG
GTGACTTTCTAAATAGCCTCCTTGGCACTGATCAACGAAATGATTCAAGC
ATAATCGAAAACAATAGGTAAGAGCAAGCCCTGTTTTTCTACTAACTTAA
TTTTATTTGTAGTATACATTCTTTGAGGCGAAATATAAGGGCCGTATTGG
GTCAATAAAATCTGTATTTGGCGAGGTTTTGCCGAGAATTTGCAGGCACA
ACACTAATTATTACCATTTTCTTTCAATTCAGTCAATCATCTAGTCAAGA
GCATCTTGTTGGACAGCAATTTGACCCACAAGCTCAACTTTACCAACAAA
ATAAGCGGTAAGACATTTGGGAAGTCTGTGTTCAAAATCAAATGAAAGAG
CTCCAGCTCCAGCTCATGCCTTATTGAGCTAATAAAAGTCATAATCAACA
ATTTTATTTACGTTCCGATTGATACAAGTTTGGGAAAATGCCTTGAAAGT
AATATTGCTTTTTAATAATAATTTCAGGATTGCATTGAATATTTCGTAAT
TATTTGGAATTTCTTTTCCTCTTCAATTTGGCCTTCAAAATAATTAAAAT
GAATGACTTTTTTAAAATTTTAGATTGGTTGATAGAGTCACAGACTTGGA
AGGGAAAGTGGCCACATTGATTGGTGTTGTCAACAAAATGTCCAAAATGA
TGACACATCGAGAATCCGCCGCAACCAACCGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034010XLOC_034010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053881-exon-scaffold_235-1575043694:77007..77320TCONS_00053881-exon-scaffold_235-1575043694:77007..77320Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1575043694:76778..76819TCONS_00053881-exon-scaffold_235-1575043694:76778..76819Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1575043694:76304..76372TCONS_00053881-exon-scaffold_235-1575043694:76304..76372Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1575043694:76064..76138TCONS_00053881-exon-scaffold_235-1575043694:76064..76138Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1575043694:75687..75797TCONS_00053881-exon-scaffold_235-1575043694:75687..75797Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1510915933:77007..77320TCONS_00053881-exon-scaffold_235-1510915933:77007..77320Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1510915933:76778..76819TCONS_00053881-exon-scaffold_235-1510915933:76778..76819Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1510915933:76304..76372TCONS_00053881-exon-scaffold_235-1510915933:76304..76372Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1510915933:76064..76138TCONS_00053881-exon-scaffold_235-1510915933:76064..76138Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1510915933:75687..75797TCONS_00053881-exon-scaffold_235-1510915933:75687..75797Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1491911889:77007..77320TCONS_00053881-exon-scaffold_235-1491911889:77007..77320Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1491911889:76778..76819TCONS_00053881-exon-scaffold_235-1491911889:76778..76819Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1491911889:76304..76372TCONS_00053881-exon-scaffold_235-1491911889:76304..76372Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1491911889:76064..76138TCONS_00053881-exon-scaffold_235-1491911889:76064..76138Clytia hemisphaericaexon
TCONS_00053881-exon-scaffold_235-1491911889:75687..75797TCONS_00053881-exon-scaffold_235-1491911889:75687..75797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:75687..77320 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.171195	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.511396	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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