TCONS_00053882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053882
Unique NameTCONS_00053882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053882 ID=TCONS_00053882|Name=TCONS_00053882|organism=Clytia hemisphaerica|type=transcript|length=534bp
AACTGGTCAAACCAACCAATCTCAAAACTATCATATAATTACAACTGGTC
AAAGCAACCAACCAAATTATCATACTCTTACAACTGGTCAATCAAATCTA
TCACTTTGGAACGACCAAACCAATACGTTTGATTTGCCCCACACGAATCA
TGGAAATTCATCAAATGGGTATCAAAATCGGAATTTTATGACGCCAACGT
CGGGGACTGCAGCTTCTGCATCGAAAACCCAAATGAGATTCAGCGCCTCT
CCAAATGGGTCGATTCTATCGCCAGTATAtggtgACTTTCTAAATAGCCT
CCTTGGCACTGATCAACGAAATGATTCAAGCATAATCGAAAACAATAGTC
AATCATCTAGTCAAGAGCATCTTGTTGGACAGCAATTTGACCCACAAGCT
CAACTTTACCAACAAAATAAGCGattgGTTGATAGAGTCACAGACTTGGA
AGGGAAAGTGGCCACATTGATTGGTGTTGTCAACAAAATGTCCAAAATGA
TGACACATCGAGAATCCGCCGCAACCAACCGGGT
Run BLAST on NCBI

protein sequence of TCONS_00053882-protein

>TCONS_00053882-protein ID=TCONS_00053882-protein|Name=TCONS_00053882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
TGQTNQSQNYHIITTGQSNQPNYHTLTTGQSNLSLWNDQTNTFDLPHTNH
GNSSNGYQNRNFMTPTSGTAASASKTQMRFSASPNGSILSPVYGDFLNSL
LGTDQRNDSSIIENNSQSSSQEHLVGQQFDPQAQLYQQNKRLVDRVTDLE
GKVATLIGVVNKMSKMMTHRESAATNR
Run BLAST on NCBI

transcript from alignment at scaffold_235:75687..78056-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053882 ID=TCONS_00053882|Name=TCONS_00053882|organism=Clytia hemisphaerica|type=transcript|length=2370bp|location=Sequence derived from alignment at scaffold_235:75687..78056- (Clytia hemisphaerica)
AACTGGTCAAACCAACCAATCTCAAAACTATCATATAATTACGTAAGTTG
ACATCCTTTAAAGTATTTTGAGGGGGTGCAGGAGGTATGTTTGGCAGTAT
GTTGGATTGCACTATACAATGGGTGTTAGGATGATTTTGGAGATTTGGAG
AGTTCTGCCTATTTAATTCTGATTATCTTGGGGATTTTAAGTTTTACAAA
AGTTCGACTTTCAAGTATTCTAATGATTTTAGGCAATTTTAATACTAAAA
CCTTTCATTTCATCATTTCAGAACTGGTCAAAGCAACCAACCAAATTATC
ATACTCTTACGTAAGTTAACATCCTTTACTGTATATATTGGGTTTGAAGA
ATTTAGAGAGCTCTGGTGATATTATCTCTGATTATTTTGGAGATTTTTCC
TTTTTACAAAAGCTTTAAAACTTCAGGTATTCTACAGTTTTTATGCAATC
TTTAAACTGAAACCCTCCTTCATTTCAGAACTGGTCAATCAAATCTATCA
CTTTGGAACGACCAAACCAATACGTAAGTTGATATGATCTCCCTAAAACA
TATTTTCTAAGTTCAAAAATTGATGGCGTAATTGGGGATCCTGGGCTATT
ATATATTTAAAAAAGAATTGTTGTTTAGTGTATATGTAATAGAAAAATTT
TAGTCGTAATTATACAAACACCAACGCATAAAGTATTCAACTCCTTTCCG
TCTAGGTTTGATTTGCCCCACACGAATCATGGAAATTCATCAAATGGGTA
TGTATTATTGCCTTTGCCCTCCTCCAAGCTATAAATGATTAAGTTTTATA
GTAAAGAATAAGAAACGTTATAATGTAATTAAATTTACTACATGTTAGAA
TTAATGACTTATTTTCTGTCGTTTATATTGAACTTTTTACTGTAGACTGT
AGTTTGTAGCAAAACACATTAAATGTAACAAAAGAAAGGGATCAGCATCA
CATATTCAAGGATTTTTTTCACTGTTTCTAGGTATCAAAATCGGAATTTT
ATGACGCCAACGTCGGGGACTGCAGCTTCTGCATCGAAAACCCAAATGAG
GTATGATAGCTGTATAATTAAGAATCGATTTATCGACCACTAATTGCTTT
AGATAAGTTTTAGATAAGGCCTCAATATGTGGTGTGTGAAAGACCATGAA
TATCGCCATGAGGAGAGCCATTTCCGGGAGTCAGCTGTATATACTTTTAA
CACTTAATACATTTTGTTTAAACGTCCTCTCTTTCAGATTCAGCGCCTCT
CCAAATGGGTCGATTCTATCGCCAGTATAGTAAGTTCTAATCTAGTTTCA
AGTTTTGAGTCTTATGAGAATGGGTCACAATGGAACCGAAATAGACTTTG
CTTCCTAACTTCCAATCTTGATCTTTTCCAACCTTGCAAGAAACATCATG
GCCTGGCCTTAATCTAAGTATATATCACTAAAACNTGAGAATGGGTCACA
ATGGAACCGAAATAGACTTTGCTTCCTAACTTCCAATCTTGATCTTTTCC
AACCTTGCAAGAAACATCATTTTGCAGACTGGCCTTAATCTAACTATATA
TCACTAAAACATGGTTAGAAATCATTTAACTTTGGTATAATTGTAAACCT
TGTATATTTGGAAAATTTCTTGTTAAAAAGAATTTAGATCCCTTCATATT
GTAACATAACGATGATTGTAAATTTTTTTTTCAGTGGTGACTTTCTAAAT
AGCCTCCTTGGCACTGATCAACGAAATGATTCAAGCATAATCGAAAACAA
TAGGTAAGAGCAAGCCCTGTTTTTCTACTAACTTAATTTTATTTGTAGTA
TACATTCTTTGAGGCGAAATATAAGGGCCGTATTGGGTCAATAAAATCTG
TATTTGGCGAGGTTTTGCCGAGAATTTGCAGGCACAACACTAATTATTAC
CATTTTCTTTCAATTCAGTCAATCATCTAGTCAAGAGCATCTTGTTGGAC
AGCAATTTGACCCACAAGCTCAACTTTACCAACAAAATAAGCGGTAAGAC
ATTTGGGAAGTCTGTGTTCAAAATCAAATGAAAGAGCTCCAGCTCCAGCT
CATGCCTTATTGAGCTAATAAAAGTCATAATCAACAATTTTATTTACGTT
CCGATTGATACAAGTTTGGGAAAATGCCTTGAAAGTAATATTGCTTTTTA
ATAATAATTTCAGGATTGCATTGAATATTTCGTAATTATTTGGAATTTCT
TTTCCTCTTCAATTTGGCCTTCAAAATAATTAAAATGAATGACTTTTTTA
AAATTTTAGATTGGTTGATAGAGTCACAGACTTGGAAGGGAAAGTGGCCA
CATTGATTGGTGTTGTCAACAAAATGTCCAAAATGATGACACATCGAGAA
TCCGCCGCAACCAACCGGGT

Coding sequence (CDS) from alignment at scaffold_235:75687..78056-

>TCONS_00053882 ID=TCONS_00053882|Name=TCONS_00053882|organism=Clytia hemisphaerica|type=CDS|length=4779bp|location=Sequence derived from alignment at scaffold_235:75687..78056- (Clytia hemisphaerica)
ATTGGTTGATAGAGTCACAGACTTGGAAGGGAAAGTGGCCACATTGATTG
GTGTTGTCAACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCA
ACCAACCGGTCAATCATCTAGTCAAGAGCATCTTGTTGGACAGCAATTTG
ACCCACAAGCTCAACTTTACCAACAAAATAAGCGTGGTGACTTTCTAAAT
AGCCTCCTTGGCACTGATCAACGAAATGATTCAAGCATAATCGAAAACAA
TAGATTCAGCGCCTCTCCAAATGGGTCGATTCTATCGCCAGTATAGTATC
AAAATCGGAATTTTATGACGCCAACGTCGGGGACTGCAGCTTCTGCATCG
AAAACCCAAATGAGGTTTGATTTGCCCCACACGAATCATGGAAATTCATC
AAATGGAACTGGTCAATCAAATCTATCACTTTGGAACGACCAAACCAATA
CAACTGGTCAAAGCAACCAACCAAATTATCATACTCTTACACTGGTCAAA
CCAACCAATCTCAAAACTATCATATAATTACATTGGTTGATAGAGTCACA
GACTTGGAAGGGAAAGTGGCCACATTGATTGGTGTTGTCAACAAAATGTC
CAAAATGATGACACATCGAGAATCCGCCGCAACCAACCGGTCAATCATCT
AGTCAAGAGCATCTTGTTGGACAGCAATTTGACCCACAAGCTCAACTTTA
CCAACAAAATAAGCGTGGTGACTTTCTAAATAGCCTCCTTGGCACTGATC
AACGAAATGATTCAAGCATAATCGAAAACAATAGATTCAGCGCCTCTCCA
AATGGGTCGATTCTATCGCCAGTATAGTATCAAAATCGGAATTTTATGAC
GCCAACGTCGGGGACTGCAGCTTCTGCATCGAAAACCCAAATGAGGTTTG
ATTTGCCCCACACGAATCATGGAAATTCATCAAATGGAACTGGTCAATCA
AATCTATCACTTTGGAACGACCAAACCAATACAACTGGTCAAAGCAACCA
ACCAAATTATCATACTCTTACACTGGTCAAACCAACCAATCTCAAAACTA
TCATATAATTACATTGGTTGATAGAGTCACAGACTTGGAAGGGAAAGTGG
CCACATTGATTGGTGTTGTCAACAAAATGTCCAAAATGATGACACATCGA
GAATCCGCCGCAACCAACCGGTCAATCATCTAGTCAAGAGCATCTTGTTG
GACAGCAATTTGACCCACAAGCTCAACTTTACCAACAAAATAAGCGTGGT
GACTTTCTAAATAGCCTCCTTGGCACTGATCAACGAAATGATTCAAGCAT
AATCGAAAACAATAGATTCAGCGCCTCTCCAAATGGGTCGATTCTATCGC
CAGTATAGTATCAAAATCGGAATTTTATGACGCCAACGTCGGGGACTGCA
GCTTCTGCATCGAAAACCCAAATGAGGTTTGATTTGCCCCACACGAATCA
TGGAAATTCATCAAATGGAACTGGTCAATCAAATCTATCACTTTGGAACG
ACCAAACCAATACAACTGGTCAAAGCAACCAACCAAATTATCATACTCTT
ACACTGGTCAAACCAACCAATCTCAAAACTATCATATAATTACATTGGTT
GATAGAGTCACAGACTTGGAAGGGAAAGTGGCCACATTGATTGGTGTTGT
CAACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCAACCAACC
GGTCAATCATCTAGTCAAGAGCATCTTGTTGGACAGCAATTTGACCCACA
AGCTCAACTTTACCAACAAAATAAGCGTGGTGACTTTCTAAATAGCCTCC
TTGGCACTGATCAACGAAATGATTCAAGCATAATCGAAAACAATAGATTC
AGCGCCTCTCCAAATGGGTCGATTCTATCGCCAGTATAGTATCAAAATCG
GAATTTTATGACGCCAACGTCGGGGACTGCAGCTTCTGCATCGAAAACCC
AAATGAGGTTTGATTTGCCCCACACGAATCATGGAAATTCATCAAATGGA
ACTGGTCAATCAAATCTATCACTTTGGAACGACCAAACCAATACAACTGG
TCAAAGCAACCAACCAAATTATCATACTCTTACACTGGTCAAACCAACCA
ATCTCAAAACTATCATATAATTACATTGGTTGATAGAGTCACAGACTTGG
AAGGGAAAGTGGCCACATTGATTGGTGTTGTCAACAAAATGTCCAAAATG
ATGACACATCGAGAATCCGCCGCAACCAACCGGTCAATCATCTAGTCAAG
AGCATCTTGTTGGACAGCAATTTGACCCACAAGCTCAACTTTACCAACAA
AATAAGCGTGGTGACTTTCTAAATAGCCTCCTTGGCACTGATCAACGAAA
TGATTCAAGCATAATCGAAAACAATAGATTCAGCGCCTCTCCAAATGGGT
CGATTCTATCGCCAGTATAGTATCAAAATCGGAATTTTATGACGCCAACG
TCGGGGACTGCAGCTTCTGCATCGAAAACCCAAATGAGGTTTGATTTGCC
CCACACGAATCATGGAAATTCATCAAATGGAACTGGTCAATCAAATCTAT
CACTTTGGAACGACCAAACCAATACAACTGGTCAAAGCAACCAACCAAAT
TATCATACTCTTACACTGGTCAAACCAACCAATCTCAAAACTATCATATA
ATTACATTGGTTGATAGAGTCACAGACTTGGAAGGGAAAGTGGCCACATT
GATTGGTGTTGTCAACAAAATGTCCAAAATGATGACACATCGAGAATCCG
CCGCAACCAACCGGTCAATCATCTAGTCAAGAGCATCTTGTTGGACAGCA
ATTTGACCCACAAGCTCAACTTTACCAACAAAATAAGCGTGGTGACTTTC
TAAATAGCCTCCTTGGCACTGATCAACGAAATGATTCAAGCATAATCGAA
AACAATAGATTCAGCGCCTCTCCAAATGGGTCGATTCTATCGCCAGTATA
GTATCAAAATCGGAATTTTATGACGCCAACGTCGGGGACTGCAGCTTCTG
CATCGAAAACCCAAATGAGGTTTGATTTGCCCCACACGAATCATGGAAAT
TCATCAAATGGAACTGGTCAATCAAATCTATCACTTTGGAACGACCAAAC
CAATACAACTGGTCAAAGCAACCAACCAAATTATCATACTCTTACACTGG
TCAAACCAACCAATCTCAAAACTATCATATAATTACATTGGTTGATAGAG
TCACAGACTTGGAAGGGAAAGTGGCCACATTGATTGGTGTTGTCAACAAA
ATGTCCAAAATGATGACACATCGAGAATCCGCCGCAACCAACCGGTCAAT
CATCTAGTCAAGAGCATCTTGTTGGACAGCAATTTGACCCACAAGCTCAA
CTTTACCAACAAAATAAGCGTGGTGACTTTCTAAATAGCCTCCTTGGCAC
TGATCAACGAAATGATTCAAGCATAATCGAAAACAATAGATTCAGCGCCT
CTCCAAATGGGTCGATTCTATCGCCAGTATAGTATCAAAATCGGAATTTT
ATGACGCCAACGTCGGGGACTGCAGCTTCTGCATCGAAAACCCAAATGAG
GTTTGATTTGCCCCACACGAATCATGGAAATTCATCAAATGGAACTGGTC
AATCAAATCTATCACTTTGGAACGACCAAACCAATACAACTGGTCAAAGC
AACCAACCAAATTATCATACTCTTACACTGGTCAAACCAACCAATCTCAA
AACTATCATATAATTACATTGGTTGATAGAGTCACAGACTTGGAAGGGAA
AGTGGCCACATTGATTGGTGTTGTCAACAAAATGTCCAAAATGATGACAC
ATCGAGAATCCGCCGCAACCAACCGGTCAATCATCTAGTCAAGAGCATCT
TGTTGGACAGCAATTTGACCCACAAGCTCAACTTTACCAACAAAATAAGC
GTGGTGACTTTCTAAATAGCCTCCTTGGCACTGATCAACGAAATGATTCA
AGCATAATCGAAAACAATAGATTCAGCGCCTCTCCAAATGGGTCGATTCT
ATCGCCAGTATAGTATCAAAATCGGAATTTTATGACGCCAACGTCGGGGA
CTGCAGCTTCTGCATCGAAAACCCAAATGAGGTTTGATTTGCCCCACACG
AATCATGGAAATTCATCAAATGGAACTGGTCAATCAAATCTATCACTTTG
GAACGACCAAACCAATACAACTGGTCAAAGCAACCAACCAAATTATCATA
CTCTTACACTGGTCAAACCAACCAATCTCAAAACTATCATATAATTACAT
TGGTTGATAGAGTCACAGACTTGGAAGGGAAAGTGGCCACATTGATTGGT
GTTGTCAACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCAAC
CAACCGGTCAATCATCTAGTCAAGAGCATCTTGTTGGACAGCAATTTGAC
CCACAAGCTCAACTTTACCAACAAAATAAGCGTGGTGACTTTCTAAATAG
CCTCCTTGGCACTGATCAACGAAATGATTCAAGCATAATCGAAAACAATA
GATTCAGCGCCTCTCCAAATGGGTCGATTCTATCGCCAGTATAGTATCAA
AATCGGAATTTTATGACGCCAACGTCGGGGACTGCAGCTTCTGCATCGAA
AACCCAAATGAGGTTTGATTTGCCCCACACGAATCATGGAAATTCATCAA
ATGGAACTGGTCAATCAAATCTATCACTTTGGAACGACCAAACCAATACA
ACTGGTCAAAGCAACCAACCAAATTATCATACTCTTACACTGGTCAAACC
AACCAATCTCAAAACTATCATATAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034010XLOC_034010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053882-exon-scaffold_235-1575043694:78015..78056TCONS_00053882-exon-scaffold_235-1575043694:78015..78056Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1575043694:77747..77785TCONS_00053882-exon-scaffold_235-1575043694:77747..77785Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1575043694:77534..77578TCONS_00053882-exon-scaffold_235-1575043694:77534..77578Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1575043694:77310..77351TCONS_00053882-exon-scaffold_235-1575043694:77310..77351Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1575043694:77007..77075TCONS_00053882-exon-scaffold_235-1575043694:77007..77075Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1575043694:76778..76819TCONS_00053882-exon-scaffold_235-1575043694:76778..76819Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1575043694:76304..76372TCONS_00053882-exon-scaffold_235-1575043694:76304..76372Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1575043694:76064..76138TCONS_00053882-exon-scaffold_235-1575043694:76064..76138Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1575043694:75687..75797TCONS_00053882-exon-scaffold_235-1575043694:75687..75797Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1510915933:78015..78056TCONS_00053882-exon-scaffold_235-1510915933:78015..78056Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1510915933:77747..77785TCONS_00053882-exon-scaffold_235-1510915933:77747..77785Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1510915933:77534..77578TCONS_00053882-exon-scaffold_235-1510915933:77534..77578Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1510915933:77310..77351TCONS_00053882-exon-scaffold_235-1510915933:77310..77351Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1510915933:77007..77075TCONS_00053882-exon-scaffold_235-1510915933:77007..77075Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1510915933:76778..76819TCONS_00053882-exon-scaffold_235-1510915933:76778..76819Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1510915933:76304..76372TCONS_00053882-exon-scaffold_235-1510915933:76304..76372Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1510915933:76064..76138TCONS_00053882-exon-scaffold_235-1510915933:76064..76138Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1510915933:75687..75797TCONS_00053882-exon-scaffold_235-1510915933:75687..75797Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1491911889:78015..78056TCONS_00053882-exon-scaffold_235-1491911889:78015..78056Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1491911889:77747..77785TCONS_00053882-exon-scaffold_235-1491911889:77747..77785Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1491911889:77534..77578TCONS_00053882-exon-scaffold_235-1491911889:77534..77578Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1491911889:77310..77351TCONS_00053882-exon-scaffold_235-1491911889:77310..77351Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1491911889:77007..77075TCONS_00053882-exon-scaffold_235-1491911889:77007..77075Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1491911889:76778..76819TCONS_00053882-exon-scaffold_235-1491911889:76778..76819Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1491911889:76304..76372TCONS_00053882-exon-scaffold_235-1491911889:76304..76372Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1491911889:76064..76138TCONS_00053882-exon-scaffold_235-1491911889:76064..76138Clytia hemisphaericaexon
TCONS_00053882-exon-scaffold_235-1491911889:75687..75797TCONS_00053882-exon-scaffold_235-1491911889:75687..75797Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053882-proteinTCONS_00053882-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:75687..78056 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.611356	0	0.319843	0.120922	6.54279	4.86239	5.50065	7.32426	6.98027	8.3355	6.60828	8.21682	5.60925	4.27202	2.33807	3.37375	1.88031	2.80725	2.14641	2.7847	1.90274	2.04034	0.513267	1.07899	1.93534	6.01171	0.664649	0.92846	0.659691	0.123445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top