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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053883 ID=TCONS_00053883|Name=TCONS_00053883|organism=Clytia hemisphaerica|type=transcript|length=918bp
aactgaggctgggcatgttcttaagatgttcttaatttttcgacgaattt
cagcctatatgttcttataaactaggttctaataaaaaaaaaaacgtgta
tttcctGGGTTTCCTACCCTTGAATAAAAATTCGTTGTgaaaaattcctt
tcaaaaGGGGAACTGTAAATGTTCCATGCATCATTTTGGTTCAATGTACA
TCTAGTGAACACAGGACGTGCTTTTAAATAGTAATAATACATAATGGAAA
GTCCTCTCAAAGCACTTTGCAAGTGTacaaaatatgttttttcaGTCTAG
AAAATAGAAACAACACGGtgaagtatttaatttttctttatgaatttttg
cttttttcaataaaatttctatagcTCCTTTTTTAAATCACATGTACATG
GATAGAAGAGAGCGCTACACCCATAATACCTGTATTTAAGATTCATTTCT
CTCTGCACTCAGTGGTGCAGGCCCCTACAGTCATGCGAagagaaccaatt
gcattgcacAAAAAACTGTGTACTCTGGTGTATATACTAGCTAGCCTGCT
TTAATTAAAAAAGTGACCTATTTTAAATACATtctatcaaattttctttt
ttaatgttatAGAATGAGTTGGGTTATCATAGACTGGGATGACAGCAGCC
TAACATGCAACAGCATAAATGATAGCAATGTTTCATGGGGTGCAACAGCG
ACTGGTGTGCCTGGTGTTGGAGATATTGTATCATGCAAGACTGGAAGTCA
TGGAAAAGTCTTTCTTGTTTTTAATACTAAACGTGAAGCTAATGATCACT
ACAACAGAATAGCACCACCCAAACCTAGAGATGTTACCACAAAGGCTAGC
CGAAAAGTAGCTAAGAGGAAAATTGATAAAGGTTTGTGATTTATTGTAAA
TCTTTGGACAAGTGTGCA Run BLAST on NCBI transcript from alignment at scaffold_235:79655..81038- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053883 ID=TCONS_00053883|Name=TCONS_00053883|organism=Clytia hemisphaerica|type=transcript|length=1384bp|location=Sequence derived from alignment at scaffold_235:79655..81038- (Clytia hemisphaerica)
AACTGAGGCTGGGCATGTTCTTAAGATGTTCTTAATTTTTCGACGAATTT
CAGCCTATATGTTCTTATAAACTAGGTTCTAATAAAAAAAAAAACGTGTA
TTTCCTGGGTTTCCTACCCTTGAATAAAAATTCGTTGTGAAAAATTCCTT
TCAAAAGGGGAACTGTAAATGTTCCATGCATCATTTTGGTTCAATGTACA
TCTAGTGAACACAGGACGTGCTTTTAAATAGTAATAATACATAATGGAAA
GTCCTCTCAAAGCACTTTGCAAGTGTACAAAATATGTTTTTTCAGTCTAG
AAAATAGAAACAACACGGTGAAGTATTTAATTTTTCTTTATGAATTTTTG
CTTTTTTCAATAAAATTTCTATAGCTCCTTTTTTAAATCACATGTACATG
GATAGAAGAGAGCGCTACACCCATAATACCTGTATTTAAGATTCATTTCT
CTCTGCACTCAGTGGTGCAGGCCCCTACAGTCATGCGAAGAGAACCAATT
GCATTGCACAAAAAACTGTGTACTCTGGTGTATATACTAGCTAGCCTGCT
TTAATTAAAAAAGTGACCTATTTTAAATACATTCTATCAAATTTTCTTTT
TTAATGTTATAGAATGAGTTGGGTTATCATAGACTGGGATGACAGCAGCC
TAACATGCAACAGCATAAATGATAGCAATGTTTCATGGGGTGCAACAGCG
ACTGGTGTGCCTGGTGTTGGAGATATTGTATCATGCAAGACTGGAAGTCA
TGGAAAAGTCTTTCTTGTTTTTAGTAGGTTTTATTTATTTGCCTTTTTAT
TTCCTAGTCAACCTTCCCCGGCTAAATATCTTTTTTACTAGTTACAGTAA
AAAAATCTTTAAGTTACACTTGTGTGAAAACTGATTTCCATGGGTGGCTA
ATTTGAATATTTCCAAAAGTCGAGATAATTAAGTCTTTTGTAAAAAACAA
TAGAATTTCAACATAACAACCGTGTGGGACCCATTTTTAGAAATTTTAAA
TTGCCATATCTTTAGGTAATTTCTCTCTTTTACTTTATGTAATAAGAATT
TTTTGTAACCATAGCAACTACAAAGAATTTTCAAACAGTCGTTATTTGGT
AAAAGAGTAAACTCCTATAAACCATATGTTTTTGGAATCGTCTTTAATGA
GCTCTTTCATATTCCATCATCAGTTTAGTAATGATTTCCCCTTCAAGGAG
CAAGTGACTTTTCAAATCAATTTATCTTTCTAACTTTAGATACTAAACGT
GAAGCTAATGATCACTACAACAGAATAGCACCACCCAAACCTAGAGATGT
TACCACAAAGGCTAGCCGAAAAGTAGCTAAGAGGAAAATTGATAAAGGTT
TGTGATTTATTGTAAATCTTTGGACAAGTGTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053883-exon-scaffold_235-1575043694:80266..81038 | TCONS_00053883-exon-scaffold_235-1575043694:80266..81038 | Clytia hemisphaerica | exon |
| TCONS_00053883-exon-scaffold_235-1575043694:79655..79799 | TCONS_00053883-exon-scaffold_235-1575043694:79655..79799 | Clytia hemisphaerica | exon |
| TCONS_00053883-exon-scaffold_235-1510915933:80266..81038 | TCONS_00053883-exon-scaffold_235-1510915933:80266..81038 | Clytia hemisphaerica | exon |
| TCONS_00053883-exon-scaffold_235-1510915933:79655..79799 | TCONS_00053883-exon-scaffold_235-1510915933:79655..79799 | Clytia hemisphaerica | exon |
| TCONS_00053883-exon-scaffold_235-1491911889:80266..81038 | TCONS_00053883-exon-scaffold_235-1491911889:80266..81038 | Clytia hemisphaerica | exon |
| TCONS_00053883-exon-scaffold_235-1491911889:79655..79799 | TCONS_00053883-exon-scaffold_235-1491911889:79655..79799 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_235 | supercontig | scaffold_235:79655..81038 - |
Blast
The following BLAST results are available for this feature:
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