TCONS_00053885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053885
Unique NameTCONS_00053885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053885 ID=TCONS_00053885|Name=TCONS_00053885|organism=Clytia hemisphaerica|type=transcript|length=233bp
AGCCAAGTATTGATTCTATTGAAGTGTTTGGaagatttttatttgaaagg
TTGTCAACAAAACAGGCCATTCAAGTTAGTGAAAAATCGACTACACAGAA
GAGTCGCAACAATTCGGAGGAAGGTAGAAACAGTTGTGAAAGAGAATTCG
AAgaaatcaactcaaaattaAAGTCCCGTCTCTCACTTATTGAAGGCCAA
CGTGAGCTCAAGCCATCAATCTTCCCATGGGCA
Run BLAST on NCBI

transcript from alignment at scaffold_235:142909..144116-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053885 ID=TCONS_00053885|Name=TCONS_00053885|organism=Clytia hemisphaerica|type=transcript|length=1208bp|location=Sequence derived from alignment at scaffold_235:142909..144116- (Clytia hemisphaerica)
AGCCAAGTATTGATTCTATTGAAGTGTTTGGAAGATTTTTATTTGAAAGG
TGATTCTTTCTTTTCAGTAGCGTAGCTATTATTCGAAAATCTGTTCAAAT
ATTTTATCTTTCATCTTGTATTTTTGCCATAATTCTCTCTTTTATTAGCT
TTTACTAACTGAATATGCCCACAAACAAATCAATATATCACTGTAAAATC
TCCTGCCAAAGTATAGTAGTACTTTAGGGGAAGGAACTTTCGAAATTCGC
GAAGTTATTTCCGCGAAAAAAAAATTTTATCTCTAATTTTACTTTTGGTA
ATGAAATTTTCTTTAAATCGACTAAAGAACAATTTTAGGGCGCTTTTGTG
GTTCTTAAGCATGAAGAATTTCAGGATTTAAATGAAAATCTAATATAAAA
AGAAGTAAAAGTCAACGAATCGCAAACGTTTGTTTTTGTTTTGTTTCCGC
GAAATATTTTTAAAAGCTCGATTCGCGAGAGTTTCTTCCCGTAAAGTAAA
GGCTTTGCACAGTGTGCCGACTTCGTATTTGTATTTTCTTTTAGGTTGTC
AACAAAACAGGCCATTCAAGTTAGTGAAAAATCGGTGGGTAAAGTATTTA
ATTTACATGATTTAGATTATTTACAAAGGTTTTGTTTGAGCCTAAAATGT
GGACTCAATTTCTCGGATTTTGGTGATTGTTTATAACATGCCTTTAAATT
TCGTATAAATGATGCTTGAGTTTTCTCAAGATTTGTGTTCATTCATTGCA
TATTCATAAAAAGGAACGTGTAGTTTCAAATCATTTTTGCCTCTTTAGAC
TACACAGAAGAGTCGCAACAATTCGGAGGAAGGTAGAAACAGTTGTGAAA
GAGGTATGAATTTTGTTGAGCTACAGAAACAGGTGGAAAGAGACCTTAAC
CGCGAAAACGAAAATGACACGATAAGTTCAAGAAATAAGGACCCAGCAGG
GTCAATGTACCATGAAGCGGTAAANAACACGATAAGTTCAAGAAATAAGG
ACCCAAGGTTCAATGTACCATGGCACAACAACTTTCATGCTCACCATGTC
TTTCAAAAGCTTAAAGTTACCTTAGCCCGTTTTAATATCAATCGCTTCCA
TATATTATTTCACTTTTAGAATTCGAAGAAATCAACTCAAAATTAAAGTC
CCGTCTCTCACTTATTGAAGGCCAACGTGAGCTCAAGCCATCAATCTTCC
CATGGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034012XLOC_034012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053885-exon-scaffold_235-1575043694:144068..144116TCONS_00053885-exon-scaffold_235-1575043694:144068..144116Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1575043694:143533..143572TCONS_00053885-exon-scaffold_235-1575043694:143533..143572Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1575043694:143264..143318TCONS_00053885-exon-scaffold_235-1575043694:143264..143318Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1575043694:142909..142997TCONS_00053885-exon-scaffold_235-1575043694:142909..142997Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1510915933:144068..144116TCONS_00053885-exon-scaffold_235-1510915933:144068..144116Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1510915933:143533..143572TCONS_00053885-exon-scaffold_235-1510915933:143533..143572Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1510915933:143264..143318TCONS_00053885-exon-scaffold_235-1510915933:143264..143318Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1510915933:142909..142997TCONS_00053885-exon-scaffold_235-1510915933:142909..142997Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1491911889:144068..144116TCONS_00053885-exon-scaffold_235-1491911889:144068..144116Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1491911889:143533..143572TCONS_00053885-exon-scaffold_235-1491911889:143533..143572Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1491911889:143264..143318TCONS_00053885-exon-scaffold_235-1491911889:143264..143318Clytia hemisphaericaexon
TCONS_00053885-exon-scaffold_235-1491911889:142909..142997TCONS_00053885-exon-scaffold_235-1491911889:142909..142997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:142909..144116 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.24241	7.74201	1.29423	0	0	3.15227	5.09946	0	2.67802	1.27359	0	0	0	0	0	0	0	0	0	0.76395	1.08082	0.486239	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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