TCONS_00053886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053886
Unique NameTCONS_00053886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053886 ID=TCONS_00053886|Name=TCONS_00053886|organism=Clytia hemisphaerica|type=transcript|length=509bp
GATCAATCGTCAAAAGTATTAGTGCCATTATAATAAGAAGTGTAAATTCT
AGTTTAGATTTCTAAAATGGTTCTGTGCTATCTCCAACACTAAAATTAGT
GGGCTGAAATTTGATAAGTAATTATCAACTGTTTGCATAGCCCTTCGACT
TAAAGTTCGAGCATCTTCTCACTTTTATACTAGGGTAAGCATTTATTTTT
CTCTGGAGGGGCtgtctggttggtattttacagaccagaatgtaaacttG
ACTGAAATCATGTTTCGACTGGTTGACTTTTTGCCGCTGAAGGGTGATTT
GTCGAAGAAAAGAGATCAGTAACAGAATATATTCGTTCCGGTGAGTATTT
GGCACTTTGCAGAAcgatctgtaaaatacacgttcaTCGCCTGCTGGAAC
TCAGGAAATACTGGagtttttgacttgaaattctTCCTAGTCATAAATAT
TGACCATCTAagacagtgtgcaaaattttacagATCGGTCCGTATCCTTC
CTGAAATAC
Run BLAST on NCBI

transcript from alignment at scaffold_235:12640..13148

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053886 ID=TCONS_00053886|Name=TCONS_00053886|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at scaffold_235:12640..13148 (Clytia hemisphaerica)
GTATTTCAGGAAGGATACGGACCGATctgtaaaattttgcacactgtctT
AGATGGTCAATATTTATGACTAGGAagaatttcaagtcaaaaactCCAGT
ATTTCCTGAGTTCCAGCAGGCGAtgaacgtgtattttacagatcgTTCTG
CAAAGTGCCAAATACTCACCGGAACGAATATATTCTGTTACTGATCTCTT
TTCTTCGACAAATCACCCTTCAGCGGCAAAAAGTCAACCAGTCGAAACAT
GATTTCAGTCaagtttacattctggtctgtaaaataccaaccagacaGCC
CCTCCAGAGAAAAATAAATGCTTACCCTAGTATAAAAGTGAGAAGATGCT
CGAACTTTAAGTCGAAGGGCTATGCAAACAGTTGATAATTACTTATCAAA
TTTCAGCCCACTAATTTTAGTGTTGGAGATAGCACAGAACCATTTTAGAA
ATCTAAACTAGAATTTACACTTCTTATTATAATGGCACTAATACTTTTGA
CGATTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034013XLOC_034013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053886-exon-scaffold_235-1491911889:12640..13148TCONS_00053886-exon-scaffold_235-1491911889:12640..13148Clytia hemisphaericaexon
TCONS_00053886-exon-scaffold_235-1510915933:12640..13148TCONS_00053886-exon-scaffold_235-1510915933:12640..13148Clytia hemisphaericaexon
TCONS_00053886-exon-scaffold_235-1575043694:12640..13148TCONS_00053886-exon-scaffold_235-1575043694:12640..13148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:12640..13148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354777	0.230643	0.163325	0.800431	0.318958	0.306445	0.695378	0.816003	0.298964	0.588596	0.718874	0.3938	2.16202	2.77709	0.671514	0.835697	0.443883	0.75401	1.38283	0.526195	0.686038	0.501938	0.135594	0.246549	1.75453	0.860806	0	0.173058	0.262517	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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