TCONS_00053894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053894
Unique NameTCONS_00053894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053894 ID=TCONS_00053894|Name=TCONS_00053894|organism=Clytia hemisphaerica|type=transcript|length=511bp
AAATAATTGGCTATTTTCAAATCTGAAACGGATCCAAGGCAAGGAAAACC
ATCTTGATTCGAGACAAAAACTTTGACGTCATAAAATTGTTGAGCTTGTG
TATTATCGGTTGAGTGGACTTCTTCCCCATTGAGAAGGATGGAATATTTG
TAAACACCTCCACTTTTGTAACGTTGGTGAATCTCCACATTGTATTCTGT
GTTGAAATGAATTTGTCGATGAATATATCTCCGATACATCCAATTGTTGT
TTACAGCAGAATCGATCAAAATCTTCTTTTCGATACTGTCAAATGTCACG
TAGGGCGTTCGTGCCCCATATTTGTGATAAAGTGGACCACTCTGCTTTAG
TTGTAAGATATTACACCAATAATTGTGTCCAGTATGGTTGCCATggagat
tgaatttgaattgaacACTCCACTCAGCTGATAATACTGGGATAACAGCT
TTCAATTTGCTTCTCTGTATGTCTTCACCTGCTGTTGAAAGATCAAGATA
TTTTTAAGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_235:108291..108801

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053894 ID=TCONS_00053894|Name=TCONS_00053894|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at scaffold_235:108291..108801 (Clytia hemisphaerica)
GTCCTTAAAAATATCTTGATCTTTCAACAGCAGGTGAAGACATACAGAGA
AGCAAATTGAAAGCTGTTATCCCAGTATTATCAGCTGAGTGGAGTgttca
attcaaattcaatctccATGGCAACCATACTGGACACAATTATTGGTGTA
ATATCTTACAACTAAAGCAGAGTGGTCCACTTTATCACAAATATGGGGCA
CGAACGCCCTACGTGACATTTGACAGTATCGAAAAGAAGATTTTGATCGA
TTCTGCTGTAAACAACAATTGGATGTATCGGAGATATATTCATCGACAAA
TTCATTTCAACACAGAATACAATGTGGAGATTCACCAACGTTACAAAAGT
GGAGGTGTTTACAAATATTCCATCCTTCTCAATGGGGAAGAAGTCCACTC
AACCGATAATACACAAGCTCAACAATTTTATGACGTCAAAGTTTTTGTCT
CGAATCAAGATGGTTTTCCTTGCCTTGGATCCGTTTCAGATTTGAAAATA
GCCAATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034021XLOC_034021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053894-exon-scaffold_235-1491911889:108291..108801TCONS_00053894-exon-scaffold_235-1491911889:108291..108801Clytia hemisphaericaexon
TCONS_00053894-exon-scaffold_235-1510915933:108291..108801TCONS_00053894-exon-scaffold_235-1510915933:108291..108801Clytia hemisphaericaexon
TCONS_00053894-exon-scaffold_235-1575043694:108291..108801TCONS_00053894-exon-scaffold_235-1575043694:108291..108801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:108291..108801 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.114558	0	0	0	0	0.164657	0.282792	0.262789	0	0	0	0.768943	0	0.239045	0.290115	1.8013	0.996054	1.18075	1.32209	3.20933	3.62934	0.568024	0.661946	2.32072	1.90098	0.568936	1.03147	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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