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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053899 ID=TCONS_00053899|Name=TCONS_00053899|organism=Clytia hemisphaerica|type=transcript|length=1207bp
GAATTCATTAACAGCTCTTTAGGAAGAGAATTAGTTCCAAATTGGAAAAG
GCATTACATCAATGCAAACAATTTTGAATATCAGGTTGAggatgaagaaa
atgaagaggaagaaagtgaaaatatttttttacgtgAAGATTGGATGGAT
ATAGCAGACCTGAATACCATGCCCAATAATGTTTCTACAGAAAATCAACA
ATATTGGACTGATTCTTATGATTCTTATACTCAAGATCAAATTAATGCAA
TGCCCTTTTGGATTGAAGAGAAAAAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAATATTGGACTGATTCTT
ATGATTCTTATACTCAAGATCAAATTAATGCAATGCCCTTTTGgattgaa
gagaaaaaaaagacttttgaaaacGATAATCCCACAGATTATAGTCAATA
TCAAGTTGAGAACTTAAATGCAGAGCAGCTCCAAGCTTACAATATTGTAC
ATGATCATGCTCAAACTATAAATGCTGACCCTTTACAAATGATAATCACT
GGGATTGCAGGAAGTGGAAAGTCATATTTAATAAATTGCATTAAAAAGCT
CCTTGGCAAAAAGTGTTTATTGACATCTTATTTTGGTATTGCTGCCTTTA
ATATTAATGGAAGAACCTTGCACAGCACTCTCAAATTGCCAATTCGAAGC
AAGTTAAAGCATGAACTGAAAGGAAAGTCACTTGACAATTTACAAACTGG
CCTTAAAGACATAGAGTATATTATTATTGATGAATTCTCTGTAGTAGGCC
AAAGATTGCTAGGCTGGATAGATAGTCGCTGCCGTCAAGCAACAGGAAAA
TTAGAAACTTTGTTTGGTGGAATGTCTATTATATTAGTAGGAGATGTTGC
ACAGTTACCACCAGTCATGGATGATGTATTGTAccattcttttccaaaaa
atgaaattgcagtTGCAGGTTATCTGGCTTATTGTTGTTTCAGAACTGTC
GTAAAACTTAAAGCAAATATGAGATCTGCTGGTGAGGATGACTCAcaaaa
gaaatttagaaaagctttgaaaaatttgagaaatggaaaatcaaCAATGG
AAGACTGGAATTTTTTCTTAACCAGACAACCTGAAAAAAACCATGTTGAC
TATAATAAATGCATCAGGCTATCCTTTGCAAATGAAGTTGTCAGAGAACA
TAATGGN Run BLAST on NCBI protein sequence of TCONS_00053899-protein >TCONS_00053899-protein ID=TCONS_00053899-protein|Name=TCONS_00053899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MFLQKINNIGLILMILILKIKLMQCPFGLKRKKXXXXXXXXXXXXXXXXX
XQYWTDSYDSYTQDQINAMPFWIEEKKKTFENDNPTDYSQYQVENLNAEQ
LQAYNIVHDHAQTINADPLQMIITGIAGSGKSYLINCIKKLLGKKCLLTS
YFGIAAFNINGRTLHSTLKLPIRSKLKHELKGKSLDNLQTGLKDIEYIII
DEFSVVGQRLLGWIDSRCRQATGKLETLFGGMSIILVGDVAQLPPVMDDV
LYHSFPKNEIAVAGYLAYCCFRTVVKLKANMRSAGEDDSQKKFRKALKNL
RNGKSTMEDWNFFLTRQPEKNHVDYNKCIRLSFANEVVREHNX Run BLAST on NCBI transcript from alignment at scaffold_235:163917..165123 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053899 ID=TCONS_00053899|Name=TCONS_00053899|organism=Clytia hemisphaerica|type=transcript|length=1207bp|location=Sequence derived from alignment at scaffold_235:163917..165123 (Clytia hemisphaerica)
NCCATTATGTTCTCTGACAACTTCATTTGCAAAGGATAGCCTGATGCATT
TATTATAGTCAACATGGTTTTTTTCAGGTTGTCTGGTTAAGAAAAAATTC
CAGTCTTCCATTGttgattttccatttctcaaatttttcaaagcttttct
aaatttcttttgTGAGTCATCCTCACCAGCAGATCTCATATTTGCTTTAA
GTTTTACGACAGTTCTGAAACAACAATAAGCCAGATAACCTGCAactgca
atttcattttttggaaaagaatggTACAATACATCATCCATGACTGGTGG
TAACTGTGCAACATCTCCTACTAATATAATAGACATTCCACCAAACAAAG
TTTCTAATTTTCCTGTTGCTTGACGGCAGCGACTATCTATCCAGCCTAGC
AATCTTTGGCCTACTACAGAGAATTCATCAATAATAATATACTCTATGTC
TTTAAGGCCAGTTTGTAAATTGTCAAGTGACTTTCCTTTCAGTTCATGCT
TTAACTTGCTTCGAATTGGCAATTTGAGAGTGCTGTGCAAGGTTCTTCCA
TTAATATTAAAGGCAGCAATACCAAAATAAGATGTCAATAAACACTTTTT
GCCAAGGAGCTTTTTAATGCAATTTATTAAATATGACTTTCCACTTCCTG
CAATCCCAGTGATTATCATTTGTAAAGGGTCAGCATTTATAGTTTGAGCA
TGATCATGTACAATATTGTAAGCTTGGAGCTGCTCTGCATTTAAGTTCTC
AACTTGATATTGACTATAATCTGTGGGATTATCgttttcaaaagtctttt
ttttctcttcaatcCAAAAGGGCATTGCATTAATTTGATCTTGAGTATAA
GAATCATAAGAATCAGTCCAATATTGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTCTCTTCAATCCAA
AAGGGCATTGCATTAATTTGATCTTGAGTATAAGAATCATAAGAATCAGT
CCAATATTGTTGATTTTCTGTAGAAACATTATTGGGCATGGTATTCAGGT
CTGCTATATCCATCCAATCTTcacgtaaaaaaatattttcactttcttcc
tcttcattttcttcatccTCAACCTGATATTCAAAATTGTTTGCATTGAT
GTAATGCCTTTTCCAATTTGGAACTAATTCTCTTCCTAAAGAGCTGTTAA
TGAATTC Coding sequence (CDS) from alignment at scaffold_235:163917..165123 >TCONS_00053899 ID=TCONS_00053899|Name=TCONS_00053899|organism=Clytia hemisphaerica|type=CDS|length=1029bp|location=Sequence derived from alignment at scaffold_235:163917..165123 (Clytia hemisphaerica)
NCCATTATGTTCTCTGACAACTTCATTTGCAAAGGATAGCCTGATGCATT
TATTATAGTCAACATGGTTTTTTTCAGGTTGTCTGGTTAAGAAAAAATTC
CAGTCTTCCATTGttgattttccatttctcaaatttttcaaagcttttct
aaatttcttttgTGAGTCATCCTCACCAGCAGATCTCATATTTGCTTTAA
GTTTTACGACAGTTCTGAAACAACAATAAGCCAGATAACCTGCAactgca
atttcattttttggaaaagaatggTACAATACATCATCCATGACTGGTGG
TAACTGTGCAACATCTCCTACTAATATAATAGACATTCCACCAAACAAAG
TTTCTAATTTTCCTGTTGCTTGACGGCAGCGACTATCTATCCAGCCTAGC
AATCTTTGGCCTACTACAGAGAATTCATCAATAATAATATACTCTATGTC
TTTAAGGCCAGTTTGTAAATTGTCAAGTGACTTTCCTTTCAGTTCATGCT
TTAACTTGCTTCGAATTGGCAATTTGAGAGTGCTGTGCAAGGTTCTTCCA
TTAATATTAAAGGCAGCAATACCAAAATAAGATGTCAATAAACACTTTTT
GCCAAGGAGCTTTTTAATGCAATTTATTAAATATGACTTTCCACTTCCTG
CAATCCCAGTGATTATCATTTGTAAAGGGTCAGCATTTATAGTTTGAGCA
TGATCATGTACAATATTGTAAGCTTGGAGCTGCTCTGCATTTAAGTTCTC
AACTTGATATTGACTATAATCTGTGGGATTATCgttttcaaaagtctttt
ttttctcttcaatcCAAAAGGGCATTGCATTAATTTGATCTTGAGTATAA
GAATCATAAGAATCAGTCCAATATTGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTCTCTTCAATCCAA
AAGGGCATTGCATTAATTTGATCTTGAGTATAAGAATCATAAGAATCAGT
CCAATATTGTTGATTTTCTGTAGAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053899-exon-scaffold_235-1491911889:163917..165123 | TCONS_00053899-exon-scaffold_235-1491911889:163917..165123 | Clytia hemisphaerica | exon |
| TCONS_00053899-exon-scaffold_235-1510915933:163917..165123 | TCONS_00053899-exon-scaffold_235-1510915933:163917..165123 | Clytia hemisphaerica | exon |
| TCONS_00053899-exon-scaffold_235-1575043694:163917..165123 | TCONS_00053899-exon-scaffold_235-1575043694:163917..165123 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_235 | supercontig | scaffold_235:163917..165123 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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