TCONS_00053902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053902
Unique NameTCONS_00053902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053902 ID=TCONS_00053902|Name=TCONS_00053902|organism=Clytia hemisphaerica|type=transcript|length=239bp
CGTCAATTGAAAAGTGGCGGTTGTTTCTTATCTTTGCTCCGTCGGGTCTG
AAATAATAGAATGAGCCGTCCTTTTGGTTGTATTGAATAGTTTCAGTAAG
AGGATCTGGGACGTCAGGGTTGAGTGCTTCAGTTTCGCGGATGCGGTTGC
AAATGTATTTCAACAGATTAGCTTCATTCTCGTCGAGTAGACCATCGATa
acaaaagattgaagaaaagcTTCGAGGGTGGGATTGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_235:178363..178601

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053902 ID=TCONS_00053902|Name=TCONS_00053902|organism=Clytia hemisphaerica|type=transcript|length=239bp|location=Sequence derived from alignment at scaffold_235:178363..178601 (Clytia hemisphaerica)
ATACAATCCCACCCTCGAAgcttttcttcaatcttttgttATCGATGGTC
TACTCGACGAGAATGAAGCTAATCTGTTGAAATACATTTGCAACCGCATC
CGCGAAACTGAAGCACTCAACCCTGACGTCCCAGATCCTCTTACTGAAAC
TATTCAATACAACCAAAAGGACGGCTCATTCTATTATTTCAGACCCGACG
GAGCAAAGATAAGAAACAACCGCCACTTTTCAATTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034029XLOC_034029Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053902-exon-scaffold_235-1491911889:178363..178601TCONS_00053902-exon-scaffold_235-1491911889:178363..178601Clytia hemisphaericaexon
TCONS_00053902-exon-scaffold_235-1510915933:178363..178601TCONS_00053902-exon-scaffold_235-1510915933:178363..178601Clytia hemisphaericaexon
TCONS_00053902-exon-scaffold_235-1575043694:178363..178601TCONS_00053902-exon-scaffold_235-1575043694:178363..178601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:178363..178601 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.914038	1.78266	0	1.01251	1.23263	5.84425	5.8757	5.50076	7.70243	8.58663	11.1125	7.91368	6.07898	1.26262	7.78532	5.56989	3.43083	7.73627	3.88657	7.11728	10.6049	3.87953	1.04802	8.57521	9.81362	10.5101	3.75998	0	2.02902	2.06725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top