TCONS_00053904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053904
Unique NameTCONS_00053904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053904 ID=TCONS_00053904|Name=TCONS_00053904|organism=Clytia hemisphaerica|type=transcript|length=381bp
NNGCAATCACCTGCAGTAACCCGTACTGCAGCCGAAAAACGACTAATGGA
AAGAATTTTTGAGCTTGAGAACAAGGTAGAACTTCTTGATCAAAAAGTCG
AATCTCTTGAAAACACTGTTGAGCCACTGAAATTAAAAATCAGCAAGCTC
ACTGACCAAAATGCGGTACTCACCTCTGTAGTAGAGAACCTAAAGACACG
AGCGGAAGAAAACCAGCAGTACAGCAGAAGAAACTGTCTCGTTCTTGAAG
GAATCACGCTTTCGAACAACGAAACCATACAGGCTCTTGAGGGGAAAGTG
GTTGCCGCACTAACGAAAGAGCTAGGGATCGAAAAATCTGAAATAGATGC
TAACTTCGACAAGACCCATAGGATCGGCCCT
Run BLAST on NCBI

protein sequence of TCONS_00053904-protein

>TCONS_00053904-protein ID=TCONS_00053904-protein|Name=TCONS_00053904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
XQSPAVTRTAAEKRLMERIFELENKVELLDQKVESLENTVEPLKLKISKL
TDQNAVLTSVVENLKTRAEENQQYSRRNCLVLEGITLSNNETIQALEGKV
VAALTKELGIEKSEIDANFDKTHRIGP
Run BLAST on NCBI

transcript from alignment at scaffold_235:186809..187189

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053904 ID=TCONS_00053904|Name=TCONS_00053904|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at scaffold_235:186809..187189 (Clytia hemisphaerica)
AGGGCCGATCCTATGGGTCTTGTCGAAGTTAGCATCTATTTCAGATTTTT
CGATCCCTAGCTCTTTCGTTAGTGCGGCAACCACTTTCCCCTCAAGAGCC
TGTATGGTTTCGTTGTTCGAAAGCGTGATTCCTTCAAGAACGAGACAGTT
TCTTCTGCTGTACTGCTGGTTTTCTTCCGCTCGTGTCTTTAGGTTCTCTA
CTACAGAGGTGAGTACCGCATTTTGGTCAGTGAGCTTGCTGATTTTTAAT
TTCAGTGGCTCAACAGTGTTTTCAAGAGATTCGACTTTTTGATCAAGAAG
TTCTACCTTGTTCTCAAGCTCAAAAATTCTTTCCATTAGTCGTTTTTCGG
CTGCAGTACGGGTTACTGCAGGTGATTGCNN

Coding sequence (CDS) from alignment at scaffold_235:186809..187189

>TCONS_00053904 ID=TCONS_00053904|Name=TCONS_00053904|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_235:186809..187189 (Clytia hemisphaerica)
AGGGCCGATCCTATGGGTCTTGTCGAAGTTAGCATCTATTTCAGATTTTT
CGATCCCTAGCTCTTTCGTTAGTGCGGCAACCACTTTCCCCTCAAGAGCC
TGTATGGTTTCGTTGTTCGAAAGCGTGATTCCTTCAAGAACGAGACAGTT
TCTTCTGCTGTACTGCTGGTTTTCTTCCGCTCGTGTCTTTAGGTTCTCTA
CTACAGAGGTGAGTACCGCATTTTGGTCAGTGAGCTTGCTGATTTTTAAT
TTCAGTGGCTCAACAGTGTTTTCAAGAGATTCGACTTTTTGATCAAGAAG
TTCTACCTTGTTCTCAAGCTCAAAAATTCTTTCCATTAGTCGTTTTTCGG
CTGCAGTACGGGTTACTGCAGGTGATTGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034031XLOC_034031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053904-exon-scaffold_235-1491911889:186809..187189TCONS_00053904-exon-scaffold_235-1491911889:186809..187189Clytia hemisphaericaexon
TCONS_00053904-exon-scaffold_235-1510915933:186809..187189TCONS_00053904-exon-scaffold_235-1510915933:186809..187189Clytia hemisphaericaexon
TCONS_00053904-exon-scaffold_235-1575043694:186809..187189TCONS_00053904-exon-scaffold_235-1575043694:186809..187189Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053904-proteinTCONS_00053904-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:186809..187189 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.02991	0.768887	1.30781	0.685462	9.28125	5.49517	3.36975	2.88952	1.0429	1.2918	0.41795	1.30371	0.960267	1.10059	0.351374	0.628463	0.154843	0.317418	0.877061	1.95392	0.797718	0.875473	0	0.64504	5.12695	3.75528	1.39937	0.603691	0.228939	0.699758
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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