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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053907 ID=TCONS_00053907|Name=TCONS_00053907|organism=Clytia hemisphaerica|type=transcript|length=449bp
TAGTGGCAGGAAAAAGACCTACAGAAAACGATGATGATGGTACACAATTC
AACGACATGCTCGAAGAGAAAAAGCTATCTCAAGAAGAGATGTCTCGCAT
CGGGAAACAGTGCGAGAAAATGGTAAAGGCTGACGTTGACGAACACCAGG
AATGTATTGTTGGACTTTTGAAACGAATAGAAGCGAATTCCATTCCATTT
TGGCGCCATGACGTATACTTCAATTTAaaagatcacttttatgatATTCC
CATCTATAACGATGAGTTCGAAATCACAAAGAccgaaaagaaaacattca
cGAAAAATGATCTGGCCCACAATACGTCTTCGGGTGGACTAACCGAAGAT
GTGCTGGAGCATATCGGTCACATCATCACCgataatttttctgaaaatgg
cATGAATTACAGGATGGCGGTACTCGAACAagtctttataaagtttttg Run BLAST on NCBI protein sequence of TCONS_00053907-protein >TCONS_00053907-protein ID=TCONS_00053907-protein|Name=TCONS_00053907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
VAGKRPTENDDDGTQFNDMLEEKKLSQEEMSRIGKQCEKMVKADVDEHQE
CIVGLLKRIEANSIPFWRHDVYFNLKDHFYDIPIYNDEFEITKTEKKTFT
KNDLAHNTSSGGLTEDVLEHIGHIITDNFSENGMNYRMAVLEQVFIKFL Run BLAST on NCBI transcript from alignment at scaffold_236:83196..84076+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053907 ID=TCONS_00053907|Name=TCONS_00053907|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at scaffold_236:83196..84076+ (Clytia hemisphaerica)
TAGTGGCAGGAAAAAGACCTACAGAAAACGATGATGATGGTACACAATTC
AACGACATGCTCGAAGGTTCGTTGGTTTATTCTATTAAATTtaagaataa
agaaaataataggaaaataatagaaaaatggTGATCAGATTCTAAGGTTT
CTCCCAAACATCAAAGCTTTTTACTGTGAATAAtaacagaaaacaaaatt
ttatagTGTTTTACTGCTTTTTATTTCAGAGAAAAAGCTATCTCAAGAAG
AGATGTCTCGCATCGGGAAACNActtaagactgctttttatttcAGAGAA
AAAGCTATCTCAAGAAGAGATGTCTCGCATCGGGAAACAGTGCGAGAAAA
TGGTAAAGGCTGACGTTGACGAACACCAGGAATGTATTGTTGGACTTTTG
AAACGAATAGAAGCGAATTCCATTCCATTTTGGCGCCATGACGTATACTT
CAATTTAaaagatcacttttatgatATTCCCATCTATAACGATGAGTTCG
AAATCACAAAGAccgaaaagaaaacattcacGAAAAATGATCTGGCCCAC
AATACGTCTTCGGGTATGTTTTAGgttcattttcatattttatacTTTGA
TATTGCCtctatattttttccaaatgaGTTTTGCCTTGAAGCAggcaatt
tcattgaaaatgaattcTGTGAAAAATTATGGAACAATTTTTGTGTAGAT
TTACATTCGTTGGTAATCCCTCCTTGATCCTCAAATCAGAAATTTTTTAA
TACTTTTCATTCCAGGTGGACTAACCGAAGATGTGCTGGAGCATATCGGT
CACATCATCACCgataatttttctgaaaatggcATGAATTACAGGATGGC
GGTACTCGAACAagtctttataaagtttttg Coding sequence (CDS) from alignment at scaffold_236:83196..84076+ >TCONS_00053907 ID=TCONS_00053907|Name=TCONS_00053907|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_236:83196..84076+ (Clytia hemisphaerica)
GTGGCAGGAAAAAGACCTACAGAAAACGATGATGATGGTACACAATTCAA
CGACATGCTCGAAGAGAAAAAGCTATCTCAAGAAGAGATGTCTCGCATCG
GGAAACAGTGCGAGAAAATGGTAAAGGCTGACGTTGACGAACACCAGGAA
TGTATTGTTGGACTTTTGAAACGAATAGAAGCGAATTCCATTCCATTTTG
GCGCCATGACGTATACTTCAATTTAaaagatcacttttatgatATTCCCA
TCTATAACGATGAGTTCGAAATCACAAAGAccgaaaagaaaacattcacG
AAAAATGATCTGGCCCACAATACGTCTTCGGGTGGACTAACCGAAGATGT
GCTGGAGCATATCGGTCACATCATCACCgataatttttctgaaaatggcA
TGAATTACAGGATGGCGGTACTCGAACAagtctttataaagtttttgGTG
GCAGGAAAAAGACCTACAGAAAACGATGATGATGGTACACAATTCAACGA
CATGCTCGAAGAGAAAAAGCTATCTCAAGAAGAGATGTCTCGCATCGGGA
AACAGTGCGAGAAAATGGTAAAGGCTGACGTTGACGAACACCAGGAATGT
ATTGTTGGACTTTTGAAACGAATAGAAGCGAATTCCATTCCATTTTGGCG
CCATGACGTATACTTCAATTTAaaagatcacttttatgatATTCCCATCT
ATAACGATGAGTTCGAAATCACAAAGAccgaaaagaaaacattcacGAAA
AATGATCTGGCCCACAATACGTCTTCGGGTGGACTAACCGAAGATGTGCT
GGAGCATATCGGTCACATCATCACCgataatttttctgaaaatggcATGA
ATTACAGGATGGCGGTACTCGAACAagtctttataaagtttttgGTGGCA
GGAAAAAGACCTACAGAAAACGATGATGATGGTACACAATTCAACGACAT
GCTCGAAGAGAAAAAGCTATCTCAAGAAGAGATGTCTCGCATCGGGAAAC
AGTGCGAGAAAATGGTAAAGGCTGACGTTGACGAACACCAGGAATGTATT
GTTGGACTTTTGAAACGAATAGAAGCGAATTCCATTCCATTTTGGCGCCA
TGACGTATACTTCAATTTAaaagatcacttttatgatATTCCCATCTATA
ACGATGAGTTCGAAATCACAAAGAccgaaaagaaaacattcacGAAAAAT
GATCTGGCCCACAATACGTCTTCGGGTGGACTAACCGAAGATGTGCTGGA
GCATATCGGTCACATCATCACCgataatttttctgaaaatggcATGAATT
ACAGGATGGCGGTACTCGAACAagtctttataaagtttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053907-exon-scaffold_236-1491911889:83196..83261 | TCONS_00053907-exon-scaffold_236-1491911889:83196..83261 | Clytia hemisphaerica | exon |
| TCONS_00053907-exon-scaffold_236-1510915933:83196..83261 | TCONS_00053907-exon-scaffold_236-1510915933:83196..83261 | Clytia hemisphaerica | exon |
| TCONS_00053907-exon-scaffold_236-1575043694:83196..83261 | TCONS_00053907-exon-scaffold_236-1575043694:83196..83261 | Clytia hemisphaerica | exon |
| TCONS_00053907-exon-scaffold_236-1491911889:83492..83758 | TCONS_00053907-exon-scaffold_236-1491911889:83492..83758 | Clytia hemisphaerica | exon |
| TCONS_00053907-exon-scaffold_236-1510915933:83492..83758 | TCONS_00053907-exon-scaffold_236-1510915933:83492..83758 | Clytia hemisphaerica | exon |
| TCONS_00053907-exon-scaffold_236-1575043694:83492..83758 | TCONS_00053907-exon-scaffold_236-1575043694:83492..83758 | Clytia hemisphaerica | exon |
| TCONS_00053907-exon-scaffold_236-1491911889:83961..84076 | TCONS_00053907-exon-scaffold_236-1491911889:83961..84076 | Clytia hemisphaerica | exon |
| TCONS_00053907-exon-scaffold_236-1510915933:83961..84076 | TCONS_00053907-exon-scaffold_236-1510915933:83961..84076 | Clytia hemisphaerica | exon |
| TCONS_00053907-exon-scaffold_236-1575043694:83961..84076 | TCONS_00053907-exon-scaffold_236-1575043694:83961..84076 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_236 | supercontig | scaffold_236:83196..84076 + |
Blast
The following BLAST results are available for this feature:
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