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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053909 ID=TCONS_00053909|Name=TCONS_00053909|organism=Clytia hemisphaerica|type=transcript|length=792bp
ttttacGAACGTTTGCAGGTAATTGCCAAAGAAAATGATGAGAAGAACGC
AAAAAGGAGATTCGCCTATCCGTGGTTGTCACCTAAAGTCGTTCCCAACT
CTATCAGTATTTAAGGTGCAATAATCATAATTGGAGATTTGAATATGCAA
TTATACGTCATCATATATTTTAAAACCCGTCTGATTCAAGCATGGATCTT
GCTACAAAAGAACTAAACGCAGTCGACCGATGATTTAAGGCAAGTCCTGG
ACATCTTACATGATGCAAAGCCATCACTCGTTTCCCATTGAATTGCCCAA
AGTCACCagaacacacacacacacacacactttTCCAAATAACAATTTGA
TGTATTTAAACCCATTGGATTGGAAACCTGCAATTATACCCTTTCTTATA
CCCTTTCAGAACATTTTAGTTGTTAGTTTAATTTTAATATTCTATCGGGT
AATATACATGATAACAATATTGGGAGTaaagagaaaaataatcaaCCCGA
TGTGGAGTTTACTTCATATTTGACAAAAACCAAGTGAAAATAGCGAAATG
TTAttgttttttagattttaaagtCCACTGAAAAATTGAAGACTTGTAAG
AATATCCAGAATCAATAGCAAACAATACTAAGCTTCAGTGTACAAAATTT
TAAATCCcatctggcacacaacgttgtttcaacgtccatctaacgttata
tggacgttgggaatgttagataaacgttgaaagaacgttgtgtgccggct
gggtagCATTAGATCtcaataaaaaaacatgtatgaagTCAG Run BLAST on NCBI transcript from alignment at scaffold_236:1442..2758- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053909 ID=TCONS_00053909|Name=TCONS_00053909|organism=Clytia hemisphaerica|type=transcript|length=1317bp|location=Sequence derived from alignment at scaffold_236:1442..2758- (Clytia hemisphaerica)
TTTTACGAACGTTTGCAGGTAATTGCCAAAGAAAATGATGAGAAGAACGC
AAAAAGGAGATTCGCCTATCCGTGGTTGTCACCTAAAGTCGTTCCCAACT
CTATCAGTATTTAAGGTGCAATAATCATAATTGGAGATTTGAATATGCAA
TTATACGTCATCATATATTTTAAAACCCGTCTGGTATATATTGTTATGTT
ATGTGAATATTGTACTTTAATGGGATGAACTTTCGAGGGGATTAAATTTC
ACGGTTGGGCCTATCCGCGAAATTCAAAAATTTCGTGGGGACTTAATTTC
ACGGTTGGCACTATTGGGTTGCAATATTTTCACGATTTTGTGACTTTTAC
TGCCAAATCATGCATGTTGGTTGTTGAAATATACATTATTTGTGCCTCTT
TGATGCAAGTAACCATTCAAAAAGTATTTATTTGACATATTTTGAGTTTT
GTTTAGAAATATTTCGCGGATGAGGCCCTACCAAATCTCCTTTGGGACTT
TTTTTTTGGATGACACCCCAATCCACCAAATCCGCAAAAGTTTATCCCAT
TAACGTACGAACGTGAGAAAGATGTTATAATGACGTTATGTTGGAACTGG
GAAACAATTATTAATACACCGTTTTATTTAAATATTTTAACTGCTTTTTT
GTTAATTATTTTACTTTAATTGTTTAATTTCTTCCTTCACATACATTATT
ATTTTAAGATTCAAGCATGGATCTTGCTACAAAAGAACTAAACGCAGTCG
ACCGATGATTTAAGGCAAGTCCTGGACATCTTACATGATGCAAAGCCATC
ACTCGTTTCCCATTGAATTGCCCAAAGTCACCAGAACACACACACACACA
CACACTTTTCCAAATAACAATTTGATGTATTTAAACCCATTGGATTGGAA
ACCTGCAATTATACCCTTTCTTATACCCTTTCAGAACATTTTAGTTGTTA
GTTTAATTTTAATATTCTATCGGGTAATATACATGATAACAATATTGGGA
GTAAAGAGAAAAATAATCAACCCGATGTGGAGTTTACTTCATATTTGACA
AAAACCAAGTGAAAATAGCGAAATGTTATTGTTTTTTAGATTTTAAAGTC
CACTGAAAAATTGAAGACTTGTAAGAATATCCAGAATCAATAGCAAACAA
TACTAAGCTTCAGTGTACAAAATTTTAAATCCCATCTGGCACACAACGTT
GTTTCAACGTCCATCTAACGTTATATGGACGTTGGGAATGTTAGATAAAC
GTTGAAAGAACGTTGTGTGCCGGCTGGGTAGCATTAGATCTCAATAAAAA
AACATGTATGAAGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053909-exon-scaffold_236-1575043694:2576..2758 | TCONS_00053909-exon-scaffold_236-1575043694:2576..2758 | Clytia hemisphaerica | exon |
| TCONS_00053909-exon-scaffold_236-1575043694:1442..2050 | TCONS_00053909-exon-scaffold_236-1575043694:1442..2050 | Clytia hemisphaerica | exon |
| TCONS_00053909-exon-scaffold_236-1510915933:2576..2758 | TCONS_00053909-exon-scaffold_236-1510915933:2576..2758 | Clytia hemisphaerica | exon |
| TCONS_00053909-exon-scaffold_236-1510915933:1442..2050 | TCONS_00053909-exon-scaffold_236-1510915933:1442..2050 | Clytia hemisphaerica | exon |
| TCONS_00053909-exon-scaffold_236-1491911889:2576..2758 | TCONS_00053909-exon-scaffold_236-1491911889:2576..2758 | Clytia hemisphaerica | exon |
| TCONS_00053909-exon-scaffold_236-1491911889:1442..2050 | TCONS_00053909-exon-scaffold_236-1491911889:1442..2050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_236 | supercontig | scaffold_236:1442..2758 - |
Blast
The following BLAST results are available for this feature:
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