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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053914 ID=TCONS_00053914|Name=TCONS_00053914|organism=Clytia hemisphaerica|type=transcript|length=904bp
AAGTAAACGTTTTTTGGATGAAAACCAATGGTTGGATCATATGGTCACTT
GCaaaaagaaatcttcatttGACCTGACTGTTGAGCCAAGACGAGCTGGA
GGAGAGAAGACAAGAGCCGATTCAGTGGAGGAGGATCATCGATGGAACCT
TCTTGCAGAGGTAAAACAAGAATTTCGATCACCGAGAAACTTAAGTCCAG
CTTTCAAAAACTCTGTTATAGATTTGTTATCAAATATATCAGTTCTTGAG
GATAGCAACCTACGTCGTTTGGCTATGGACTTTTCTACGAACCAGCGTGT
CAGCGATGACATTATTTCCCTGGTTATAGAAAAGCTAAACTCTGATGAAC
AAAGCAAAACATTTTGTTTATCGTTTACGGAGGAGTTTTATGGTGAGCAA
TGGAGTGACAATGTTCTCTCTGGGTTTCAGCGTAAAGCTGAAAGTGGCGC
ACCGGAATTTCTCATTGTGTTCTTGAATACAGGTCGCTACCATTACGATT
CGATAAACGAATTCAAAACATTTGTAGGGCAGGGTGTAGGTGAAGACAAT
AACGAAATTCCTTCTTGTCATTACTCTATTGCAATCGTTGATTTAAAAAA
CCAGAACATCATTTATGCATGTTCGACAGGCTGGGAATTACCCGAGCTAT
TTTGTGAAAGAATGAATCTCTTACTGTTGAAGCTGGGAATTGATAGAATC
GATAGTTTTGTCCAGTGTCACAGTAGCTCAAGCATCGTCCCGCATTCTTG
TAAGAAGGGTAGATGTTCTGAAANCGATAGTTTTGTCCAGTGTCACAGTA
GCTCAAGCATCGTCCCGCATTCTTGTAAGAAGGGTAGATGTTCTGAAAAT
TACCCTTTACAATCATGTGGAGTCATATGTGGAGTACTGGTGTCTTTGAT
GGCT Run BLAST on NCBI protein sequence of TCONS_00053914-protein >TCONS_00053914-protein ID=TCONS_00053914-protein|Name=TCONS_00053914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
SKRFLDENQWLDHMVTCKKKSSFDLTVEPRRAGGEKTRADSVEEDHRWNL
LAEVKQEFRSPRNLSPAFKNSVIDLLSNISVLEDSNLRRLAMDFSTNQRV
SDDIISLVIEKLNSDEQSKTFCLSFTEEFYGEQWSDNVLSGFQRKAESGA
PEFLIVFLNTGRYHYDSINEFKTFVGQGVGEDNNEIPSCHYSIAIVDLKN
QNIIYACSTGWELPELFCERMNLLLLKLGIDRIDSFVQCHSSSSIVPHSC
KKGRCSEXDSFVQCHSSSSIVPHSCKKGRCSENYPLQSCGVICGVLVSLM
A Run BLAST on NCBI transcript from alignment at scaffold_236:55985..56888 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053914 ID=TCONS_00053914|Name=TCONS_00053914|organism=Clytia hemisphaerica|type=transcript|length=904bp|location=Sequence derived from alignment at scaffold_236:55985..56888 (Clytia hemisphaerica)
AGCCATCAAAGACACCAGTACTCCACATATGACTCCACATGATTGTAAAG
GGTAATTTTCAGAACATCTACCCTTCTTACAAGAATGCGGGACGATGCTT
GAGCTACTGTGACACTGGACAAAACTATCGNTTTCAGAACATCTACCCTT
CTTACAAGAATGCGGGACGATGCTTGAGCTACTGTGACACTGGACAAAAC
TATCGATTCTATCAATTCCCAGCTTCAACAGTAAGAGATTCATTCTTTCA
CAAAATAGCTCGGGTAATTCCCAGCCTGTCGAACATGCATAAATGATGTT
CTGGTTTTTTAAATCAACGATTGCAATAGAGTAATGACAAGAAGGAATTT
CGTTATTGTCTTCACCTACACCCTGCCCTACAAATGTTTTGAATTCGTTT
ATCGAATCGTAATGGTAGCGACCTGTATTCAAGAACACAATGAGAAATTC
CGGTGCGCCACTTTCAGCTTTACGCTGAAACCCAGAGAGAACATTGTCAC
TCCATTGCTCACCATAAAACTCCTCCGTAAACGATAAACAAAATGTTTTG
CTTTGTTCATCAGAGTTTAGCTTTTCTATAACCAGGGAAATAATGTCATC
GCTGACACGCTGGTTCGTAGAAAAGTCCATAGCCAAACGACGTAGGTTGC
TATCCTCAAGAACTGATATATTTGATAACAAATCTATAACAGAGTTTTTG
AAAGCTGGACTTAAGTTTCTCGGTGATCGAAATTCTTGTTTTACCTCTGC
AAGAAGGTTCCATCGATGATCCTCCTCCACTGAATCGGCTCTTGTCTTCT
CTCCTCCAGCTCGTCTTGGCTCAACAGTCAGGTCaaatgaagatttcttt
ttGCAAGTGACCATATGATCCAACCATTGGTTTTCATCCAAAAAACGTTT
ACTT Coding sequence (CDS) from alignment at scaffold_236:55985..56888 >TCONS_00053914 ID=TCONS_00053914|Name=TCONS_00053914|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_236:55985..56888 (Clytia hemisphaerica)
AGCCATCAAAGACACCAGTACTCCACATATGACTCCACATGATTGTAAAG
GGTAATTTTCAGAACATCTACCCTTCTTACAAGAATGCGGGACGATGCTT
GAGCTACTGTGACACTGGACAAAACTATCGNTTTCAGAACATCTACCCTT
CTTACAAGAATGCGGGACGATGCTTGAGCTACTGTGACACTGGACAAAAC
TATCGATTCTATCAATTCCCAGCTTCAACAGTAAGAGATTCATTCTTTCA
CAAAATAGCTCGGGTAATTCCCAGCCTGTCGAACATGCATAAATGATGTT
CTGGTTTTTTAAATCAACGATTGCAATAGAGTAATGACAAGAAGGAATTT
CGTTATTGTCTTCACCTACACCCTGCCCTACAAATGTTTTGAATTCGTTT
ATCGAATCGTAATGGTAGCGACCTGTATTCAAGAACACAATGAGAAATTC
CGGTGCGCCACTTTCAGCTTTACGCTGAAACCCAGAGAGAACATTGTCAC
TCCATTGCTCACCATAAAACTCCTCCGTAAACGATAAACAAAATGTTTTG
CTTTGTTCATCAGAGTTTAGCTTTTCTATAACCAGGGAAATAATGTCATC
GCTGACACGCTGGTTCGTAGAAAAGTCCATAGCCAAACGACGTAGGTTGC
TATCCTCAAGAACTGATATATTTGATAACAAATCTATAACAGAGTTTTTG
AAAGCTGGACTTAAGTTTCTCGGTGATCGAAATTCTTGTTTTACCTCTGC
AAGAAGGTTCCATCGATGATCCTCCTCCACTGAATCGGCTCTTGTCTTCT
CTCCTCCAGCTCGTCTTGGCTCAACAGTCAGGTCaaatgaagatttcttt
ttGCAAGTGACCATATGATCCAACCATTGGTTTTCATCCAAAAAACGTTT
ACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053914-exon-scaffold_236-1491911889:55985..56888 | TCONS_00053914-exon-scaffold_236-1491911889:55985..56888 | Clytia hemisphaerica | exon |
| TCONS_00053914-exon-scaffold_236-1510915933:55985..56888 | TCONS_00053914-exon-scaffold_236-1510915933:55985..56888 | Clytia hemisphaerica | exon |
| TCONS_00053914-exon-scaffold_236-1575043694:55985..56888 | TCONS_00053914-exon-scaffold_236-1575043694:55985..56888 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_236 | supercontig | scaffold_236:55985..56888 . |
Blast
The following BLAST results are available for this feature:
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