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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053921 ID=TCONS_00053921|Name=TCONS_00053921|organism=Clytia hemisphaerica|type=transcript|length=1123bpRun BLAST on NCBI transcript from alignment at scaffold_237:418..22093+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053921 ID=TCONS_00053921|Name=TCONS_00053921|organism=Clytia hemisphaerica|type=transcript|length=21676bp|location=Sequence derived from alignment at scaffold_237:418..22093+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053921 vs. Swiss-Prot (Human)
Match: HYI (Putative hydroxypyruvate isomerase OS=Homo sapiens GN=HYI PE=1 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 1.288e-39 Identity = 47/121 (38.84%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 544 TACLEPISTI---DRYFMESADQAVDIIKELKCQNVKLQLDLFHQQRTRGSLTETITKYLDHIGHIQISQVPDRSEPDDHGEINYKHIFKLLQKLQYQHWIGCEYTPILE-VNGFDWMKPY 894
LEPI+T +YF+++ QA I++++ N++LQ+D+FH Q G+LT I ++L +GH+Q++QVP R EP GE+N+ ++F+LL+ Y+ ++GCEY P + V G W++ Y
Sbjct: 146 VGLLEPINTRITDPQYFLDTPQQAAAILQKVGRPNLQLQMDIFHWQIMDGNLTGNIREFLPIVGHVQVAQVPGRGEPSSPGELNFPYLFQLLEDEGYKGFVGCEYQPRGDTVEGLSWLRSY 266 HSP 2 Score: 77.411 bits (189), Expect = 1.288e-39 Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 2
Query: 143 PLRFSANLSFLFSQIEDPGQRYNLAKQAGFTSVEWGNDIYQYPIHDLVEINKDNHFEHVLINMFTGKTK----GLACVPGRSEEFKQCLELSIEYCKNLKCKRLHILAGQYSEDTDITQETKKTYHDTFINNVTFASERLA 553
PLRFSANLS+LF ++ R A +GF +VE + P + VLIN G + GL VPGR F++ LE ++ Y K L C R+H++AG+ + D K F+ N+ A+ LA
Sbjct: 3 PLRFSANLSWLFPELSGLPARVRAAGSSGFEAVEVAWPYAETPEALARAAREAG-LRLVLINTPPGDQEKGEMGLGAVPGRQAAFREGLEQAVRYAKALGCPRIHLMAGRVPQGADRI-AVKAEMEAVFLENLRHAAGVLA 141 The following BLAST results are available for this feature:
BLAST of TCONS_00053921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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