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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053926 ID=TCONS_00053926|Name=TCONS_00053926|organism=Clytia hemisphaerica|type=transcript|length=1599bp
GAAAGTCGTCTGCAAAATGAAGATGAATGTTGTCTGCAAGATGAAGAAGA
ATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAAT
GTTGTCTGCAAGATGAAGAAGAATGTTGTCTgcaagatgaagaagaaagt
CGTCTGCAAGATGAAGATGAATGTTGTCTGCAAGATAAAGAAGAATGTTG
TCTgcaagatgaagaagaaagtTGTCTGCAAGATGAAGAAGAATGTTGTC
TgcaagatgaagaagaaagtTGTCTGCAAGATGAAGAAGAATGTTGTCTG
CAAGATGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCA
AGACGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAG
ATGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGAT
GAAGAAGAATGTTGTCTGCAAGACGAAGAAGAAAGTTCTCTGCAAGATGA
AGAAGAATGTTGTCTgcaagatgaagaagaaagtTGTCTGCAAGATGAAG
AAGAATGTTGTCTGCAAGATGAAGAAGAATGTTCTCTGCAAGATGAAGAA
GAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGATGAAGAAGA
ATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGNAAGTTCTCTGCAAGA
TGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGATG
AAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTCTCTGCAAGATGAA
GAAGAATGTTGTCTgcaagatgaagaagaaagtTCTCTGCAAGATGAAGA
AGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGATGAAGAAG
AATGTTGTCTgcaagatgaagaagaaagtTGTATTGAAGAAAAATCACCT
GATGTAAGAACTGAAGAAATTGAAAcggaagatgaagaagatgacGGTGA
TAATTCCGTTACTTCGAGTTCAAGCGAAACCGAAGTCTCTTATTATTTCA
TACCGACACCTCGAAAGAATGTCGGTTGTATTTCAAGGATACAGCATTTC
TATGACGACTGGAAATGGAATAAGGAGTATAGAAGGAGAAACCGGGAAGC
TAGAAAACAAAGTATAATAAAATGGCAAGAAGAAATCGAACGCAAATGGA
AGTTGGGTAGAGATCTAAGGTACGTTCTGAACTTTGATCCCTAACGAggt
ttcccagctggcacacaacgtagtttcaacgtttatctaacgttcacaac
atccatgtaacgttagatgaacgttgaagcaAGGTTTTGAGCCAGCTGGG
TCTACATTAAACCTCggtaaaatgaattttttttttccaaagattttttt
ttagtttaatgtattagtagggggaaatttgttttttttttgaggtcgct
cgacttttttagtcaaagcacttgttatacatttttggaaagctaaggga
taggggaatcaaaataatttgggtgccaatttttttcggacactttggtg
tgattttcggacaaatacgacggtctcaggcaaaaatcatagggtgaaa Run BLAST on NCBI transcript from alignment at scaffold_237:209129..211548+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053926 ID=TCONS_00053926|Name=TCONS_00053926|organism=Clytia hemisphaerica|type=transcript|length=2420bp|location=Sequence derived from alignment at scaffold_237:209129..211548+ (Clytia hemisphaerica)
GAAAGTCGTCTGCAAAATGAAGATGAATGTTGTCTGCAAGATGAAGAAGA
ATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAAT
GTTGTCTGCAAGATGAAGAAGAATGTTGTCTgcaagatgaagaagaaagt
CGTCTGCAAGATGAAGATGAATGTTGTCTGCAAGATAAAGAAGAATGTTG
TCTgcaagatgaagaagaaagtTGTCTGCAAGATGAAGAAGAATGTTGTC
TgcaagatgaagaagaaagtTGTCTGCAAGATGAAGAAGAATGTTGTCTG
CAAGATGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCA
AGACGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAG
ATGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGAT
GAAGAAGAATGTTGTCTGCAAGACGAAGAAGAAAGTTCTCTGCAAGATGA
AGAAGAATGTTGTCTgcaagatgaagaagaaagtTGTCTGCAAGATGAAG
AAGAATGTTGTCTGCAAGATGAAGAAGAATGTTCTCTGCAAGATGAAGAA
GAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGATGAAGAAGA
ATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGNAAGTTCTCTGCAAGA
TGAAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGATG
AAGAAGAATGTTGTCTGCAAGATGAAGAAGAATGTTCTCTGCAAGATGAA
GAAGAATGTTGTCTgcaagatgaagaagaaagtTCTCTGCAAGATGAAGA
AGAATGTTGTCTGCAAGATGAAGAAGAATGTTGTCTGCAAGATGAAGAAG
AATGTTGTCTgcaagatgaagaagaaagtTGTATTGAAGAAAAATCACCT
GATGTAAGAACTGAAGAAATTGAAAcggaagatgaagaagatgacGGTGA
TAATTCCGTTACTTCGAGTTCAAGGtacgcattttttataagaacattct
acATTTTCttaaagccttcaaatgttcttaacttttcgagtttgaAACCC
TATTTGAATAACCTTTAAAAACTTCCAAATATGCCATTTTATTTACTCTG
TATTTTATAGATTCTATCTTGCGGGGGGGGCTATTAGGGTCAAACCACCa
tttactttaatcggattaaatttagCGAGCGAgagaaatcgcgaaatttt
ttggatttaatttcgcgagttttgaaaaatttcgcgaataTACCTgaaaa
acagctgaaaaatactgtagccattttttgccacaAATGAAGACTTTGCC
TTTGCACCTTGGACTGGTTTCTCCGCCAAAAAtgcgattttaaaaatttt
gtggtggatttaattttgcgagtcAGGAATCTCATGCGTTTTCACGAGTT
TTAATTTcacgaaaatggcaaaaattcgcgaaatcgcgaaatttaatctc
gcgaaagttaatccgattaaagtaataTTAGTTGTCTTCCTTCTACTCAC
CACCAATTTTTTCCATCCaaattgttcttaggtttttgcAAAACAAAAGG
CCACCTGTTTTTATTTAGATAATGGCGTTGCCTCTTAACGATAGTGAATA
ATTGCACTTTTGATGAGGACGGCGCAGTGACTGAagtgatttggaataac
ccgcagtttgACCTGCAAAACGGTAAATATAAAAGACTTCCTAACCGTCG
TCCTAATTCAATTGGGATATATAGATAAATCATAAGATAACCGTCTCCGC
TCCTGTAAAACACAGATATATAATTTCGCTTTTTTATCTTTCTAGCGAAA
CCGAAGTCTCTTATTATTTCATACCGACACCTCGAAAGAATGTCGGTTGT
ATTTCAAGGATACAGCATTTCTATGACGACTGGAAATGGAATAAGGAGTA
TAGAAGGAGAAACCGGGAAGCTAGAAAACAAAGTATAATAAAATGGCAAG
AAGAAATCGAACGCAAATGGAAGTTGGGTAGAGATCTAAGGTACGTTCTG
AACTTTGATCCCTAACGAggtttcccagctggcacacaacgtagtttcaa
cgtttatctaacgttcacaacatccatgtaacgttagatgaacgttgaag
caAGGTTTTGAGCCAGCTGGGTCTACATTAAACCTCggtaaaatgaattt
tttttttccaaagatttttttttagtttaatgtattagtagggggaaatt
tgttttttttttgaggtcgctcgacttttttagtcaaagcacttgttata
catttttggaaagctaagggataggggaatcaaaataatttgggtgccaa
tttttttcggacactttggtgtgattttcggacaaatacgacggtctcag
gcaaaaatcatagggtgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053926-exon-scaffold_237-1491911889:209129..210152 | TCONS_00053926-exon-scaffold_237-1491911889:209129..210152 | Clytia hemisphaerica | exon |
| TCONS_00053926-exon-scaffold_237-1510915933:209129..210152 | TCONS_00053926-exon-scaffold_237-1510915933:209129..210152 | Clytia hemisphaerica | exon |
| TCONS_00053926-exon-scaffold_237-1575043694:209129..210152 | TCONS_00053926-exon-scaffold_237-1575043694:209129..210152 | Clytia hemisphaerica | exon |
| TCONS_00053926-exon-scaffold_237-1491911889:210974..211548 | TCONS_00053926-exon-scaffold_237-1491911889:210974..211548 | Clytia hemisphaerica | exon |
| TCONS_00053926-exon-scaffold_237-1510915933:210974..211548 | TCONS_00053926-exon-scaffold_237-1510915933:210974..211548 | Clytia hemisphaerica | exon |
| TCONS_00053926-exon-scaffold_237-1575043694:210974..211548 | TCONS_00053926-exon-scaffold_237-1575043694:210974..211548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:209129..211548 + |
Blast
The following BLAST results are available for this feature:
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