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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053928 ID=TCONS_00053928|Name=TCONS_00053928|organism=Clytia hemisphaerica|type=transcript|length=2696bp
CAAGGATACAGCATTTCTATGACGACTGGAAATGGAATAAGGAGTATAGA
AGGAGAAACCGGGAAGCTAGAAAACAAAGTATAATAAAATGGCAAGAAGA
AATCGAACGCAAATGGAAGTTGGGTAGAGATCTAAGGGAAATGATTGCAG
TTGAGAACGAAATGGGTGAGGTGAATTTCTATTTGGCTAAATTTGAGTCT
TTCAAATTAATATTCGAAACGAATGACGTGTGTCCATCAAGTCCAGCAAT
ACATACATCAAAACTAACTATTTCACCAGCTGAATCGCTAGATCCTTCNT
CCATCAAGTCCAGCAATACATACGTCAAAACTAACTATTTCACCAGCTGA
ATCGCTAGATCCTTCAACTCCAATATCAGATTCGCCAAAACCATCAATAC
CACCAGATTCACCAGAAATGTTAATTCCAAAAGCGCTAGCATATTCACCA
AAACTATCAAATCGTCCAGCAAAGTTACCAGATTCGTCAAGTCTAACATC
AGGTTCGCCAGATCCATCAATTCCAATATCAGACTCGACAGAACCATTAT
CTCTAAACGAAGATACAATAGAACTATCAAATCGCCCAGCAAAGTTACCA
GATCAGTCAAATCTAACATCAGGCTCGCCAGATCCATCAATTCCAATGGC
AGATTTGACAGAACCATTATCTCTAAAAGAAAATACAACAGAACTATCAA
ATCGTCAAGGAAAGTcatcagatccatcaactcTAACATTGGGTCCGCCA
AATCCATCAATGCCACTGtcagattcaccagaaccattgaaTCCAATAGT
ATTATCCCCATCATCAGCTCCGTCAGATAAATCGATTCCACCAGTAGATT
TGCCAGAGCTATCAAACTCAAAAgtagattcaccagaaccatcggTCCCA
ACAGAAAGTCAGCCAGAATCATCAATTCTATCAGCAGACCCTTCAAACCC
AGCATCAGATTCACCAAAACCTTCAATTCCATCATCAGATTCACCAGAGC
CTTCAATCCCAGCATCAGATTCACCAGAGCCTTCAATCCCAGCATCAGAT
TCCCCAGATCCTTCAATACCATCAACAAAACTATCAATTCAACCAACAGA
TTCACCAGATCCTTCAATACCATCAACAAAACTATCAATTCAACCAACAG
ATTCACCAGAGCCTTCAATACCATCAACAAAACTATCAATTCAACCAACA
GATTCACCAGAAATGATGGATTCACAAACATCTTCTACTCAATACACCGA
AGAGATAATGAAAGTAGTACTTAAATATAATCACGAAATGAATGTCCTTG
ATGTCAAAAAAGCAATCGAAGAAAAATATAGNAGATAATGAAAGTAGAAC
TTAAATATAATCACGAAATGAATGTCCTTGATGTCAAAAAAGCAATCGAA
GAAAAATATGGCATCAGATGGTTTCATATAGAATTGTCATTTAATGGAAA
ACTTATCGATGACAACGAAAATATGTTTGAATTGTTTGTCAAATCAAATC
CAACATCGCGAGATGATCTTCTTTGTTTACATGTGTCGGTTGTCAGGCGT
CCGTTTCCAATTCGAGTCATGATGGAAGAAGATACTGTTTTTGAAGTTGA
AGTAGAAGAAGATGACACCATTgaaaagGTGAAGGAACGTATTACCAAAT
TGAAAGAGTTTGATTTCGAATTCGAGTTAGACATTGATATATGTGAGTAT
CTCAAAGACGGCAGTAAAGTTCAAGACTACAAGCTAGAACCAAAACAAGA
AATCCGCttagaaaagaaatatgaaCTTCATTTCCATCTTATTTTCAAAG
ATGGTCCAAATAACAGGGAAGATATTGTACACCGTGAGATTTTTCCAGTC
ATAGTATCACTGGACTGTTTGTATAGGAATGTTGGTGATGTTGTTAAAGA
TATTCGACAAATATATAATATAGGTGATGAAATGGTGATTCAATTCTTAC
ATGCTAAACATAAAGTCTCAAAAAGATCTATCATGAAAAGATTTATCTAC
GAAAAAATTGCCGATGCTTCACCATTGACTTTTGCTGTTATCCCGAAAGC
TGGAGATGAAGAAATAGGAACTCAGGGATGTAATTTGCTATgataaatac
acgctttttttttataagaatgagtATACCACAGATTTTTGCATATTTCC
CTACGGGAAATATTGGACTATCTGTGCCTAAGTGATACCAGGCTCAAAAC
TATTTAACAAACAATCGTATCCCTGGATttaatactttaatcggataaAT
TTTCTCTGGGATTAAATTTTCGctgggattaaatttcgtggttGAGCTCA
TTCGCGGGGTTTTATTTACGCTGGTGGCATGATATTGAgagagacaatat
tttcacaatttgGTGCCATTACTTACTGCCAAAACATGCAggtttgttgt
tgaaatacgcattattaaggtatctttgatgccagtaaatatttaaaaga
tggtttatttaacatttttgagttttgtatatataatataaaaaaatttt
gcggataaggcctttccaaatttccattgggactaaTTTCGCGGATGAAC
CCAAATCTGCGATATTAAAACCCCGCAAAATGTTATCCCATTAAAGTCAA
GAAAATATTGACCGATCAATGATCAGTAAAAATGATATGGAAAAGTAATC
GGAACCTAGATTTATTACACCGATGGACTTATAAGGTCATAGAAAT Run BLAST on NCBI transcript from alignment at scaffold_237:211033..219109+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053928 ID=TCONS_00053928|Name=TCONS_00053928|organism=Clytia hemisphaerica|type=transcript|length=8077bp|location=Sequence derived from alignment at scaffold_237:211033..219109+ (Clytia hemisphaerica)
CAAGGATACAGCATTTCTATGACGACTGGAAATGGAATAAGGAGTATAGA
AGGAGAAACCGGGAAGCTAGAAAACAAAGTATAATAAAATGGCAAGAAGA
AATCGAACGCAAATGGAAGTTGGGTAGAGATCTAAGGTACGTTCTGAACT
TTGATCCCTAACGAggtttcccagctggcacacaacgtagtttcaacgtt
tatctaacgttcacaacatccatgtaacgttagatgaacgttgaagcaAG
GTTTTGAGCCAGCTGGGTCTACATTAAACCTCggtaaaatgaattttttt
tttccaaagatttttttttagtttaatgtattagtagggggaaatttgtt
ttttttttgaggtcgctcgacttttttagtcaaagcacttgttatacatt
tttggaaagctaagggataggggaatcaaaataatttgggtgccaatttt
tttcggacactttggtgtgattttcggacaaatacgacggtctcaggcaa
aaatcatagggtgaaaaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNattgcgagtataggtgatttctttacctaac
tcgagatattaatccttaaaaacagtgtttttcagtgtttttcagccaga
aacagctgttttgtccagttttcgCACTTTCGGAAGTTGAGGTTTCACAG
TGTCCAGAATTTTAGTTCCGCCTTCAGCTTTTCTTTTATGTGCAGATATT
TCAATTTCGAATTATAGTTCATAAATAAACGGAGAAACATTTTTTCCTAG
TTTAAACTAACTGACGAATGCTTGAAAGagcaagaaactttaagtattat
ggaaaaaagtttctccGTTCATTTCTAAACTATGATAACGATCTACCAGG
GTATAGGAGCACTCTATTGAGTTTAAAGACAGTCATACACAggtgggggg
ggggtcttgcagttactccttgacactatatgtggagtaactgcaatttt
ggacattttctacagacaccaccacccttgcagttattccatagtgtact
aactgattttaccctcaaaattggtgtatcccaaccccaaaaatgccaaa
tttggcaattttttcactgaattcctcatttttgataccattttactggg
tacgtcttattaacgaccgttcaagagttaaatatctcaatcattttcca
agtttatctttcatgccttgattgaagaaaaaatttgtgatttttttttg
acttttgaaaaaaatgttttgaatttatttgcttccggaatttttaaaaa
cctaaaattttaagtgaaaattgaaaaatgtgctcacttagtacaccata
tcctaccaaaatcgacaattttgggcttaagcaccacccatgttgcagtt
agtccactggtggagtaactgttttcccaaattttggtttatataccacc
acggtagtaattgtcatagtgtttatataataactgcatgacccccctgT
CATACAATCAATTTCGAATTAAATACCTTAGATATCTAACTCCGAAAATT
CCCGACCAAAATATCACACCGCCAAGCAATAATATGGTAATATCAAATGA
AGAGAAGTGTAACATAATCAATGTTTACATTTATGGCATTCCCTGGTTAA
ATAGAAACGATATTAACGTAGATTTTGATGAACCAATCCAACCATATATC
GCTTTGCAGATGGACCACAACCAGAATATCTTTGATTTAAAAGAAAGAAT
TGGTCAAATATACAATATCCCTCCTAAAAAGCAGATACTGTTTACTGCTC
CACCAAAGAAACAACTCGATGATGTAAAGATTCTTGACGACGAATCTGTT
CCATTGATTCAATATTTAAACCCTTTAGATCACATACATGGTTTATTACA
GGTGACAAAAGATTCCTTTGATCTTCAATTTATTTCACTTTCCACTTTGT
AATTACAATAGGATcactataactcgaatgtcctCATAACTCAAATGTCC
CCTCCCCCTTATGCTGTTTGAGTTATGTTCAAGATTCTACTAAAACCTCT
TTCAGGTTCGTTGTTCGACAACATTTGTCGGTTGAAGACACAAGTCTTGA
AAGTGTGCTTTATTTTtattatgagagtttcttgttaagGATGGCTTTCA
ATATTAGTCGAATAAAGGaccctatcgaatagtagaacgtcgacagttag
agagcgtcaactgtagtcgTAAACATCCCCTCTTTTTGTTACATCTGTAT
TAAAGTTTGTATTATGAAACAACTCGATAATGTAAAGATTCTTGATGACG
AATCTGTTCCATTGATTCAATATTTAAACCCTTTAGATCACATACATGGT
TTATTACAGGTGACAAAAGATTCCTTTGATCTTCAATTTATTTCACTTTC
CACTTTGTAATTACAATAGGATcactataactcgaatgtcctCATAACTC
AAATGTCCCCTCCCCCTTATGCTGTTTGAGTTATGTTCAAGATTCTACTA
AAACCTCTTTCAGGTTCGTTGTTCGACAACATTTGTCGGTTGAAGACACA
AGTCTTGAAAGTGTGCTTTATTTTtattatgagagtttcttgttaagGAT
GGCTTTCAATATTAGTCGAATAAAGGaccctatcgaatagtagaacgtcg
acagttagagagcgtcaactgtagtcgTAAACATCCCCTCTTTTTGTTAC
ATCTGTATTAAAGTTTGTATTATGAAACAACTCGATGATGTAAAGATTCT
TGATGACGAATCTGTTCCATTGATTCAATATTTAAACCCTTTAGATCACA
TACATGGTTTATTACAGGTGACAAAAGATTCCTTTGATTTTCAAGAAGAA
GTTACCAAGATGTCTGGAACGAGAATGATTCTTAAACTTGGTTTAAGTAT
GATTCCAAACAATACACACAGTAAGGATATGATAACACCAGAGCTGCTAG
AAAACCTTCGGAATCATCACATAACGCATTTTTATGAAATCAAGTTCAAA
GAATTTGGATCGGAGCAACTTATTAGTAGATTTAGAATGTATTCATTCAT
GGATAATAATGATATTGATTGGGCAATACAGACCATATGCAACAACCATG
TCGATCGAGATTCAAAATTCGATTCAAAATTCACAAAGGATTCAAAAAAA
TTACTGTATAAAAATGTAGAAGGTCGATTCACCATTGTTAACCAGTTGGA
AAATAATGGCAGGTATGGGTTTTATAcatatttatttataaacaacTCCA
ATGTTCTTGGCCTGGTCGGTCTGGGATTGCTTAgtattctagctcatttt
ctgaaaaatttgcttttatACATTCTATGCTTATTCCACTTATTTGGTCA
ATCAGCagccctggggggggggggggggggggggggNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGAAATacaaa
agggcgtaaaaagacaCCTCTGATTACTAATCTCGGCGCCCCTTTGGTCT
TTTAGGCCTTAGATAATATGACAGTTTTCGGCCAAAATATCCCAAAATTT
TCGTGCTCGTTTCTCTCGCATAATTTTGCAAAGATATTTACTTTTAATAG
gggtgtcaaaatcaaaaacctCTAAAACTTCCTCCCCAGCTTGCCCGAAC
TTTAGTccacccaccacgctactggggTCAATGGCTATCGTTTGCTATGG
TTGGATTATCTAAAGAGCTTTTACTTTACAAGATAGTGAAATTTGAACTC
TCGAGCCTTAGCAaactggttgcttataaaagaaattggtacaataattt
ttgatgccttaactggattaaatttcgcatgGATTAACATTCGCAATTTa
cgcgaattttggccattttcgcgagAATTAGTCTTTGCAAAAATTCCAAA
TTCGAATTTGGGACATAACCCACAGGAAATGAGAGAAATTGGATGAAGAA
GAGGCTGATTTGCGAAATTTTGTCCCacgtgaaaattaatccactattca
tgatatgcaccactgcaatgactccACGAAatgcaacttttttttttcca
cTGCCTATACGTtgctttttctattgtttttgtgacgtattgggtggaaa
atttttaaaattctcagaagactcttcagtggtgcatatcatgaataggt
aaTTTTGGTAACAAACAATATTTATGCACTATTTTATAATATAGTCATTC
ATTCTCAAACTTTTATCCTTTTTTTCAATGAAGGGAAATGATTGCAGTTG
AGAACGAAATGGGTGAGGTGAATTTCTATTTGGCTAAATTTGAGTCTTTC
AAATTAATATTCGAAACGAATGACGTGTGTCCATCAAGTCCAGCAATACA
TACATCAAAACTAACTATTTCACCAGCTGAATCGCTAGATCCTTCNTCCA
TCAAGTCCAGCAATACATACGTCAAAACTAACTATTTCACCAGCTGAATC
GCTAGATCCTTCAACTCCAATATCAGATTCGCCAAAACCATCAATACCAC
CAGATTCACCAGAAATGTTAATTCCAAAAGCGCTAGCATATTCACCAAAA
CTATCAAATCGTCCAGCAAAGTTACCAGATTCGTCAAGTCTAACATCAGA
TTCGCCAGATTCATCAATTTCAATATCAGATTCGAAAGAACCCTTATCTC
TAAAAGAAGATACAGCAGAACTATCAAATCGTCCAGCAAATTTACCAGAT
CTGTCAAATCTAACATCAGGTTCGCCAGATCCATCAATTCCAATATCAGA
CTCGACAGAACCATTATCTCTAAACGAAGATACAATAGAACTATCAAATC
GCCCAGCAAAGTTACCAGATCAGTCAAATCTAACATCAGGCTCGCCAGAT
CCATCAATTCCAATGGCAGATTTGACAGAACCATTATCTCTAAAAGAAAA
TACAACAGAACTATCAAATCGTCAAGGAAAGTcatcagatccatcaactc
TAACATTGGGTCCGCCAAATCCATCAATGCCACTGtcagattcaccagaa
ccattgaaTCCAATAGTATTATCCCCATCATCAGCTCCGTCAGATAAATC
GATTCCACCAGTAGATTTGCCAGAGCTATCAAACTCAAAAgtagattcac
cagaaccatcggTCCCAACAGAAAGTCAGCCAGAATCATCAATTCTATCA
GCAGACCCTTCAAACCCAGCATCAGATTCACCAAAACCTTCAATTCCATC
ATCAGATTCACCAGAGCCTTCAATCCCAGCATCAGATTCACCAGAGCCTT
CAATCCCAGCATCAGATTCCCCAGATCCTTCAATACCATCAACAAAACTA
TCAATTCAACCAACAGATTCACCAGATCCTTCAATACCATCAACAAAACT
ATCAATTCAACCAACAGATTCACCAGAGCCTTCAATACCATCAACAAAAC
TATCAATTCAACCAACAGATTCACCAGAAATGATGGATTCACAAACATCT
TCTACTCAATACACCGAAGAGATAATGAAAGTAGTACTTAAATATAATCA
CGAAATGAATGTCCTTGATGTCAAAAAAGCAATCGAAGAAAAATATAGNA
GATAATGAAAGTAGAACTTAAATATAATCACGAAATGAATGTCCTTGATG
TCAAAAAAGCAATCGAAGAAAAATATGGCATCAGATGGTTTCATATAGAA
TTGTCATTTAATGGAAAACTTATCGATGACAACGAAAATATGTTTGAATT
GTTTGTCAAATCAAATCCAACATCGCGAGATGATCTTCTTTGTTTACATG
TGTCGGTTGTCAGGCGTCCGTTTCCAATTCGAGTCATGATGGAAGAAGAT
ACTGTTTTTGAAGTTGAAGTAGAAGAAGATGACACCATTgaaaaggttgg
aatttttgacGGCTGGAAAattgttttcgaaaaattataaacgcccctcc
ccctatgaaaaatgcaaaatttagTTCCTCTACTTAATGACAAAACTCGT
CAAAATTCTCACCGAAATTGAAATAATTGCTGCCTCGGGGGAATGCagga
tataatttttttttttaatttacccCGGGACGGCAGGTCTAACCCCCGGA
CAAGTatcagttgaccccccccctgaacatttaaattaccctcaaacaaa
GCAAAACTACCCTCGagcagagcaagtttacccctcAGACAAGACATATG
TAGATTTTCCACTACCCTCCGGACACCTGAAAGAGCCCAATGTCCTGAGG
AGGAGAAAATAGGCAGACGGATTTTCTAGGCCATTAAGTTTGATGGCCCG
AAGCGTCTAGTGATGAATCTGTTGGTTGGTAATGAAGCTTTAAACTCGAT
GCGAATTAGATCATGTTCAGTCGTTACGATTCCGTTTTGCtccgaaatta
aatgttttaccatgacaaacgatagcccttgatCCAATAAGTATAAATAG
CGGCAGTTGcataaaggtagagcatccagctacggtgtgcAAGGTTGAGG
GTTCGATCCCCAACCGGGTCATCAAAGATTCTCagaatggtacttgatgc
ctctctacttgatgctcagcaactaaagagacagATCAAGTTAATGTGGA
GAAATCCGGGGAAAGAAGTGGCGCCCTCCTCTACCTTCaggtagacagct
agagaaagGGGAGCCCTCGGTTTGCTATCGACTGTGGTgacaaacttact
tacttaaacaTAAATATGGTAAAATATCAGATGATCAAAGCAAATTAGCT
AGAATACTAAGTAATCCCAGGGCTGACCCGAGAATTGTATTTCCTTCCAT
TTAAAACAGGTGAAGGAACGTATTACCAAATTGAAAGAGTTTGATTTCGA
ATTCGAGTTAGACATTGATATATGTGAGTATCTCAAAGACGGCAGTAAAG
TTCAAGACTACAAGCTAGAACCAAAACAAGAAATCCGCttagaaaagaaa
tatgaaCTTCATTTCCATCTTATTTTCAAAGATGGTCCAAATAACAGGGA
AGATATTGTACACCGTGAGATTTTTCCAGTCATAGTATCACTGGACTGTT
TGTATAGGAATGTTGGTGATGTTGTTAAAGATATTCGACAAATATATAAT
ATAGGTGATGAAATGGTGATTCAATTCTTACATGCTAAACATAAAGTCTC
AAAAAGATCTATCATGAAAAGATTTATCTACGAAAAAATTGCCGATGCTT
CACCATTGACTTTTGCTGTTATCCCGAAAGCTGGAGATGAAGAAATAGGA
ACTCAGGGATGTAATTTGCTATgataaatacacgctttttttttataaga
atgagtATACCACAGATTTTTGCATATTTCCCTACGGGAAATATTGGACT
ATCTGTGCCTAAGTGATACCAGGCTCAAAACTATTTAACAAACAATCGTA
TCCCTGGATttaatactttaatcggataaATTTTCTCTGGGATTAAATTT
TCGctgggattaaatttcgtggttGAGCTCATTCGCGGGGTTTTATTTAC
GCTGGTGGCATGATATTGAgagagacaatattttcacaatttgGTGCCAT
TACTTACTGCCAAAACATGCAggtttgttgttgaaatacgcattattaag
gtatctttgatgccagtaaatatttaaaagatggtttatttaacattttt
gagttttgtatatataatataaaaaaattttgcggataaggcctttccaa
atttccattgggactaaTTTCGCGGATGAACCCAAATCTGCGATATTAAA
ACCCCGCAAAATGTTATCCCATTAAAGTCAAGAAAATATTGACCGATCAA
TGATCAGTAAAAATGATATGGAAAAGTAATCGGAACCTAGATTTATTACA
CCGATGGACTTATAAGGTCATAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053928-exon-scaffold_237-1491911889:211033..211168 | TCONS_00053928-exon-scaffold_237-1491911889:211033..211168 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1510915933:211033..211168 | TCONS_00053928-exon-scaffold_237-1510915933:211033..211168 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1575043694:211033..211168 | TCONS_00053928-exon-scaffold_237-1575043694:211033..211168 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1491911889:215516..215876 | TCONS_00053928-exon-scaffold_237-1491911889:215516..215876 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1510915933:215516..215876 | TCONS_00053928-exon-scaffold_237-1510915933:215516..215876 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1575043694:215516..215876 | TCONS_00053928-exon-scaffold_237-1575043694:215516..215876 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1491911889:215997..217127 | TCONS_00053928-exon-scaffold_237-1491911889:215997..217127 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1510915933:215997..217127 | TCONS_00053928-exon-scaffold_237-1510915933:215997..217127 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1575043694:215997..217127 | TCONS_00053928-exon-scaffold_237-1575043694:215997..217127 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1491911889:218042..219109 | TCONS_00053928-exon-scaffold_237-1491911889:218042..219109 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1510915933:218042..219109 | TCONS_00053928-exon-scaffold_237-1510915933:218042..219109 | Clytia hemisphaerica | exon |
| TCONS_00053928-exon-scaffold_237-1575043694:218042..219109 | TCONS_00053928-exon-scaffold_237-1575043694:218042..219109 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:211033..219109 + |
Blast
The following BLAST results are available for this feature:
|
