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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053931 ID=TCONS_00053931|Name=TCONS_00053931|organism=Clytia hemisphaerica|type=transcript|length=381bp
agcaaaaactaataaaaaacaacaaatagaTCACACATGCACGCTGGAAT
TATATCAAGCTAAAATGACTGGCTGATAAACCGTCCAATGGAACCTCTTG
GAACCAATGAAATATATTTGACGTCACAACTGTAAATAATGTCCGAACGT
GGACGTTCGTTTTCAGGGGGTTGGAACCATAAAGATCGACCCAGACCACC
ACGTATTGCAACTGTAAAACCAGTCTCCAAAAGTTTCTCAGAAGCTGACC
TCATGAAGTTGGACGTCAATGGCGAGCGGCCGAACATCTCACCGCGCGTC
TTCAGTCGACTTAAAGTTCAAGATTTAGCGTGCCTCAAGAAAGATAATCT
GATCaGTGAATTAGAGAAATGCTTAGGGGAA Run BLAST on NCBI transcript from alignment at scaffold_237:247260..250245+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053931 ID=TCONS_00053931|Name=TCONS_00053931|organism=Clytia hemisphaerica|type=transcript|length=2986bp|location=Sequence derived from alignment at scaffold_237:247260..250245+ (Clytia hemisphaerica)
agcaaaaactaataaaaaacaacaaatagaTCACACATGCACGCTGGAAT
TATATCAAGCTAAAATGACTGGCTGATAAACCGTCCAATGGAACCTCTTG
GAACCAATGAAATATATTTGACGTCACAACTGTAAATAATGTCCGAACGT
GGACGTTCGTTTTCAGGTAACAGTTTTATCTTCTATATATATAATTATAT
TAAACACTAGGTAGAGCTACTCTTTCTTTTCCCAAGTAAGGacaggtgaa
gcaaaataatccgccatctttgctgaaagtagatCACAGTAGGCCACAGT
TtggtaccggcaatttgttcaaacaagcaaaaaaaccAAGTGGTGCGAAG
CGACGAGGCGAAAGACAGGCTTGATCGATCAAATTACCGACACCGAACTA
TTGTCTacttatcaaagatggcggattatttCGCTTCAAATACGGACGGA
GTAGCTCAATCtaatgttttatataagatatctgtggtatCTTCCCACTT
GTCATTTTCTAACGTCTAATTTTATAAACGTTATACAGGCAGGAAGAAAT
ATAAACGTTATTATGACGTTCTGTACCAGCTTGGTCTGAATTCGTGATCT
AAAAATCTCACCGGGTAGAGGTTTTTTCACCTCGATTTTGACGAGGACAA
GAACGAAACTTTCTATCACTCTTAACAAGTCtgctttgactttttttaat
tcttagcTATAAAAATGTGAATTTAGTGTGTTTCTGGGTTATTCGATTGT
TTCGCTTGTGTCAAAACTTAAGCAGTTCTCCTTACAAAGGTCCTATTTTT
TAAGTATTGTCCCCTTTCTGCTACTCTCTGTGCATGcgacagtagcgtag
acaggggtgaaggAACATTTGCTTAGGAGAGCAGATATCAACGTCAGAGT
AATTATGTTTTTACGAAAATGTAAGTGTTTTGTTGtgaaaatctgctctc
ctacgcagATCGTTCTTCACCTCTGTCTACGCTTCTGTGTGATACCAcca
aaattcaagattttcactaaaacttaAGTTAGAGTAAATTGCTTATCGCA
AAAAAATGAGAGCGCCACCGTACACAACAATATCTTTCATACTCTATTGC
ATTCTAAATAAACACTAGATATTGGTCAAATAGCGTTTTGTTCGCTCCCT
GATCCGGAAGCCCTGCAAATTGCATCGAGGTAACATCTCGTGTCGTTAAT
TGCCATAGGCGATGGTTCCTCGTATTATAAAAGTAAACTcagaccataga
tttataaagcccggagggctagatgtcgtgctttacaAGCTTTCGcatgc
aaaaaaaagtgaatatcggaaaaaatattgttgcaaAACACGAGAGCGCC
ACCGTACACAACAATATCTTTCACACTCTAGTGGATTCTAAATAAACACT
AGATATTGGtattgctattgttttcgaaaacccgtgaagcttttgattgg
tcaagtgctgaatttctattgtaatatcacgtgacttaggtagaatttcc
tacctaaccacggtacacttttcagcaaaagtacgccaAAAGTGCCCCTC
GGGCTTATAAATCTATGACTCAGACCtctaaacgtgtttttatttgatgt
ttcAGGGGGTTGGAACCATAAAGATCGACCCAGACCACCACGTATTGCAA
CTGTAAAACCAGTCTCCAAAAGTTTCTCAGAAGCTGACCTCATGAAGTTG
GACGTCAATGGTGAGCGGCCGAATATCTCACCGCGCGTCTTCAGTCGACT
TAAAGTTCAAGATTTAGCTTGCCTCAAGAAAGATAATCTGATCAGTAAGT
TTACTTTTTCCTAAACCCTTCATGAATAATTTAGTTGANAACCcgtgaag
cttctgattggtcaagtgctgaatttctattgtaatatcacgtgacttag
gtagaatttcctacctaaccacggtacacttttcagcaaaagtacgccaA
AAGTGCCCCTCGGGCTTATAAATCTATGACTCAGACCtctaaacgtgttt
ttatttgatgtttcAGGGGGTTGGAACCATAAAGATCGACCCAGACCACC
ACGTATTGCAACTGTAAAACCAGTCTCCAAAAGTTTCTCAGAAGCTGACC
TCATGAAGTTGGACGTCAATGGCGAGCGGCCGAACATCTCACCGCGCGTC
TTCAGTCGACTTAAAGTTCAAGATTTAGCGTGCCTCAAGAAAGATAATCT
GATCagtaagtttaatttttcctaaaccCTTCATGAATAATTTAGTTGAA
GATTAATGCCTACCGTATTCCACTGATTATGAATATTTCCCCTCAACAAG
CCCAAGATTTAGATGCTAATCTATAGATTCCACAGGGGGTATTTTTTTGC
AAGGTAATTTCTTTTTCCGTTTCTGAGTCGTCAATTACCTGTTTAATTCT
TCTGATTTGGGATAATGACAACAggaatgcccaaaacatgagaAACTCTC
TAGCTCATCCAAAGTTTCCCTTCAACGATGAGGTGAAATGCTCAAGGGAA
GAGATACCCACCACGGGGTTTATTTTGGCTCAATAACTCCAAAGTGTTAA
AACTTCTTTCGTCTCATATGGATTTTCGTCTTAATGATGtaaataccgag
tttatgtatcggaggatattgagggcgacggtaagtgaaatcgatacaaa
acaaagtcgatagttgatgtacggctctatatcgcctttgctcacctaaa
aagacgacggtatcttggtgtttttaccgtcgtcgagcaaagtggacggt
gatttccGTCcccttcgatttatctcgaatacataaactcgctaatgaaG
AGGATTTCCCGTCTCCAAATTCTGCATGATTATCCGAAATCTCTGGAATA
TGTGCTATTTTTCtatgtaaaatccattttccgtgTCAAACGAGAAAATC
CATTGGTTTGACCATTGTAACCATTGTAACATTGTAAGTCTTTTGTCTTC
AAACCACCAGGTGAATTAGAGAAATGCTTAGGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053931-exon-scaffold_237-1491911889:247260..247425 | TCONS_00053931-exon-scaffold_237-1491911889:247260..247425 | Clytia hemisphaerica | exon |
| TCONS_00053931-exon-scaffold_237-1510915933:247260..247425 | TCONS_00053931-exon-scaffold_237-1510915933:247260..247425 | Clytia hemisphaerica | exon |
| TCONS_00053931-exon-scaffold_237-1575043694:247260..247425 | TCONS_00053931-exon-scaffold_237-1575043694:247260..247425 | Clytia hemisphaerica | exon |
| TCONS_00053931-exon-scaffold_237-1491911889:249276..249464 | TCONS_00053931-exon-scaffold_237-1491911889:249276..249464 | Clytia hemisphaerica | exon |
| TCONS_00053931-exon-scaffold_237-1510915933:249276..249464 | TCONS_00053931-exon-scaffold_237-1510915933:249276..249464 | Clytia hemisphaerica | exon |
| TCONS_00053931-exon-scaffold_237-1575043694:249276..249464 | TCONS_00053931-exon-scaffold_237-1575043694:249276..249464 | Clytia hemisphaerica | exon |
| TCONS_00053931-exon-scaffold_237-1491911889:250220..250245 | TCONS_00053931-exon-scaffold_237-1491911889:250220..250245 | Clytia hemisphaerica | exon |
| TCONS_00053931-exon-scaffold_237-1510915933:250220..250245 | TCONS_00053931-exon-scaffold_237-1510915933:250220..250245 | Clytia hemisphaerica | exon |
| TCONS_00053931-exon-scaffold_237-1575043694:250220..250245 | TCONS_00053931-exon-scaffold_237-1575043694:250220..250245 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:247260..250245 + |
Blast
The following BLAST results are available for this feature:
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