TCONS_00053943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053943
Unique NameTCONS_00053943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053943 ID=TCONS_00053943|Name=TCONS_00053943|organism=Clytia hemisphaerica|type=transcript|length=1740bp
ATCTTGCCAACGACATTTTGGTTTTTGAGTTCATGAGAAGACCAATTTGA
TACATCAGGATCAGAGACAGTGACAAAGACTTTGAGCGCTCATATAAACC
AGCTATAGCCAATAAGCCTGTACACAATGGGATTATTATTTGTATACAAT
TTTGCTGAAGAATTGATTATGGGAAAGACTGATGTTGTTAGAAGAGAGAG
GAATGGTCGTTTATGTGAGCCTGACCAGAAAAGTTTTGGAACTGAAAGAA
CAGGCAgctcaaattcattttttaagTCGATTGCTTGAAGAGGACACACC
TTCAACACGCAAAGTCTCTGAAATGCTGCATGAAGTCATTGGCAGTGTTC
CGAAGATGAAGAATTTTGTGAAAATCGTAAGCTCAGACAAGAGATGATGA
TGATTTCTGGTTTAGAATGAAAGAATTGGAATCGAACGAGTAGATATATA
TCAATCATCTTCAAAAGGACATTTCACAGGGCCAAACGGAAAATCCTTTG
TACCGATATTTCAATGGACAATTGCATCATTCAATCACAATAATACCAAT
ATTTCGATTCTGATAGTTAGAAGAAATTACGAAGTGATTTTGGTGATCCA
CGATCTCGATTCGGAGTTCTTGCACAGACTCTGATACTTACACAATTGGA
GCTCACCAAAATCCAGACCGAAAAACATCGAAAATGTTACCTAGTGGCGA
AGTGTATTTACTACGCACGCATCAAATCATCAGTGACAGATCAAGACAAA
TCACTGCCTTCCTATTTCTTAAAAACAACATGGTTCAATCTTCTGGAGCA
ACATCCTGTATCGTGGTTTGAAGATCGTACAATATTCGATATTATTGGTG
AATTGTATGGTGAACTAGCTGTTTGTTTTGGAACAGGATATATGGAAAAT
ATCTTTATCAGCAAAATGAACATCCTGAGAGAGGTCGATCGCTCAAAGTT
AGAAGAAGCTGAGATAATGTGCCGTGCAATTGCTGTCGATCCGTCTGCAT
ATTTACCGGATGATCTTATCCACGTGATGAAAGTTGGTAAATCTGCCTTG
AAATTTGGAGAGTATATGCTGGAATTCATGGAGAAAACAGATTTAAAAAT
GCTAGATGGAATTTATAAATTGATTCATCCTCCAATTAACAACAGTGTTG
AGAAAGTTACGTCAAAACCGGCTATGGTTGGTATTGTGTATGACAGTGAC
AGCGAtttagattaattttttttgatcgtATTCTTGGACCGTGTATTGTT
CTTTGTTACTCTTTGTATATAGATAAAAACTTACGttcgaattttatttt
gatagaaaaaataGGGCACTTTCCCATTAAAACGcctgtatcacagaccc
gcTTGGACCCCAGCCGActgaaaatttggtaaaatttcgtccccggtggg
agaATATCCTGGAATTGCAGCACCACTGGGAAATTAACTTTGACTCTCCA
TTTGcgattcaatgtttaaaaattgaacccatctgggatttcaataggaa
tttttatccccactgaggaaaaaagttctacttgggctgtgagacaggga
tgtacaTTACGATAACTTTTAGCGAATTTTAAGCCATTCAACAAAGTATT
TTTAAGaatgattttgataattttttggtAAATGCAGTTCTTACTTCTTG
GTCACTTTGAACGTTCAATTGTTTTCGTCATATTTTTGTTGGTTTTGTAC
TCGAATTTAAACTTCTCTTGGTACACTGTTTAAAAGTCAG
Run BLAST on NCBI

transcript from alignment at scaffold_237:471517..493935+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053943 ID=TCONS_00053943|Name=TCONS_00053943|organism=Clytia hemisphaerica|type=transcript|length=22419bp|location=Sequence derived from alignment at scaffold_237:471517..493935+ (Clytia hemisphaerica)
ATCTTGCCAACGACATTTTGGTTTTTGAGTTCATGAGAAGACCAATTTGA
TACATCAGGATCAGAGACAGTGACAAAGACTTTGAGCGCTCATATAAACC
AGCTATAGCCAATAAGGTAATATAGTTGCATAGAGTGAATATGTTCTGAC
TTTAACGGGGTCGAAAGCCGAAAATTCTGGACCAAGATTTTTTTACATGG
GGTAATATTTGTTGGTTGACTGGGGGTGTACAATATGCTATAATCCTTTA
TTAAATTATACCATTTAACCCCATAGGGGGCTGTTTCTCTTCAGGTTTGA
AACTGATGTtaagctcctgaaataatagagcttttggcatgaaatttttt
gtaaattcaaaataaagcttcaaaataaataaaaatttgacacctaaaag
tTTTTACCTGAGCAAGATGACATCTCTGACAGCAAGGTGTCACTGAAATC
GAAATATTTCAATACAAGTTTAATTTTGTCAAATAATATCGtctaaaccg
taatttattgaatatttttctaaagctATTTAGAAGTAtaaaggaaattt
tctgtttcgcTCTCTTTGGACATGATCAGTGACGTAACAAAAAATTACAT
TATATGACAAGAATCTTGTGTgccaaaattaatccaaaaagacctacttg
atcaaaagttaaatgggttacaggaaaagcccccccccccctctagCTTC
GAAGCGctcctaaaagcctagtatgaatctGTATAGATctgtatgaatag
ggttaaattattccattttattctttttaaacaaacaaacaaaccttAGT
ACAACTACTTTAGTCTGTACGACACCCTCGTTGTGAATATTCTATTTAAT
ATCATATCAACTTGCCAATTTCTTTTCATACAAACATTAAACATAAACGG
CTGTGGAAAGAACTGGATTCTTGCCAACTACATAATCAAATCTCTGACCT
CGTATTTAATTTTGCCGTTTGCATATTGCTGTTAAAGTAAATCCCCAAAT
TTGGGTAcctgtttaaattttcttaagaaGGTACAGAAATCTAATGATCG
TATTAACCCTCTAGtctttcaaagattttattcaaatttaatgaaattta
aagatctcCCATATGAAACTTACTCATCAAGCTGATcaagtttttggacc
taccccggtgggatGGAGGTCCTAttaattaacctgtgtttgttcgttcg
ttcgtctgttaccaatttttctcaggattgaatcataggaatcttttgaa
atttacgaaggtgcaaaatggtggtggctaaaatgtgactgagcccactt
ttcaaaaaaaaaaatttggggcaaatttgggccaaaaaacgggttttctg
gactttttgaaaaattggatcattaattttttctgattttttgcatgaaa
gtagggtaccatcataggtaaaaaaaattttgttggctcaaaaaacgcat
gtttatctataagaatcacttttaataagcatacatcaatgttcttagtc
aaattactcaatttatttatgagatagaagttttttttgcttatgagggt
ttacttttgaagaatatgtgtgtttagacatgaaattttggttgcttggc
gtgtttaaatagaaaaactagccaaatttgatattttttataatcacatt
atcaattacttaggtattagctcttctcgagattggctctttcattcttt
atgattttttgcacgaagaTGCATTattataaaccctcgaatgtgacgga
gctcgatttttggagaaaaaaaatttggggttaaatttcagctaaaaaac
gtctaaaaaaatgttttttggacttcgtgaaatattggatcatgattttt
tgcatgaaagtaggtaaaagatggaaCAAGCagctttttgtaaaaaaaaa
aattttcagctcaaCAACATACATCAATGCTCTTAGccaaatttctcaat
tttttgatgagatagatgtttattttgctcacgaagtcttgaatatgaaa
gaatatttcaagagcatgaaattttagtttctaaacgtttttttataaga
aaaaaacgactaattttaatagattgtcactatttgtgttcggaatgatt
gtttaacggtcatgctcacgtagatatcaattatatatgtgttaaatgca
taaccaggtaggtccataaaagtatcacttgttgaaacttaaaaacacaa
agacgggggtaaatcTTGGACGGGAATTTTATGCACGATACCCATTCTCT
AAAACAAAACATCAGAGATGATGCGTGCAGCCTTAGTCGAGTTTGGTTTC
TGAGTCGAAAACCAACGGGTCAAATAAGACTAGAACACATAACCATGCCA
TTTTTGGACATATTCTTTTTTATCGAGTCACTAATCCTTGTGGAGCCGGA
GCAATAAATTCTTGTTTACTGACTAGACAAGAGAACTTTTCGAACCCCAC
TTGTCAGCCATAACGGCCCTCCCTGGAGCTATGAAGcaccatcttgtttt
gtttgttcaaccaaaagttttaaatGTAATTTTCATCTTTATAGCCTGTA
CACAATGGGATTATTATTTGTATACAATTTTGCTGAAGAATTGATTATGG
GAAAGACTGATGTTGTTAGAAGAGAGAGGAATGGTCGTTTATGTGAGCCT
GACCAGAAAAGTTTTGGAACTGAAAGAACAGGCAgctcaaattcattttt
taagTCGATTGCTTGAAGAGGACACACCTTCAACACGCAAAGTCTCTGAA
ATGCTGCATGAAGTCATTGGCAGTGTTCCGAAGATGAAGAATTTTGTGAA
AATCGTAAGGTATTTTAAAACTATACAATTACTTTTTTGCGATCCTTTGA
ATTTGTATGTTTTGTGGcagattttcgaatttttctgcAGAAAATGGTTC
AAAACGGCAGTAATAATCAATAATGGCTTTTAATAAAATGTTTGAAGGAA
ATGTCATTGACAAAAAAGGTTTAAATTTATCAAATATCTTGCTCGTCTAG
TAGTTTCATAAGCTTTACTTCTACTACCCGGATTTTCTAATTCCGATCCG
GATTCTTATTCCAACTCCCCTTTCCGACCTCCCCCCTCCTTAccactttt
tggaaaaattattcttAAAACTCTTTATTGCATTCCTCTGTATCAGTGAG
TTTTTTAATGATGTTCCAGTTCGATTCCAGACCCCTGGAGAAACCCTAGA
GTAAGATTGTCTTTGCTaatgatattttttcttttcgtcAATCAGCTCAG
ACAAGAGATGATGATGATTTCTGGTTTAGAATGAAAGAATTGGAATCGAA
CGAGTAGATATATATCAATCATCTTCAAAAGGTTAATTTCATATTTCTTG
TTCTCCCAGTTCACATTGAATTGCGAGTAAGATTCTATGGTCTAAAAATG
GAAAAGTTACAGTCAAAACACTGACTTCTCAAGGACAATCATTATAAGGG
AGAAGGCAGACTAGAAGTCTGTATAAAGAATAAGTAGTTGGTGTTATNAT
AAGTGAGAAGGCAGACTAGAAGTCTGTATAAAGAATAAGTAGTTGGTGTT
ATCTAATTGAGGATAGAGGGTGACATTCTGAGCAAACGAATGTACTACTA
CATGGGTTATTAAAGTGAATTGGGAGAAATCTGCACTAGCGCTTTATCAA
CTTTATCTCTTTTTTCGAATTTCACAGGACATTTCACAGGGCCAAACGGA
AAATCCTTTGTACCGATATTTCAATGGACAATTGCATCATTCAATCACAA
TAATACCAATATTTCGATTCTGATAGTTAGAAGAAATTACGAAGTGATTT
TGGTGATCCACGATCTCGATTCGGAGTTCTTGCACAGACTCTGATACTTA
CACGTAAGTTTTTAAAGATGTTTTAATCGTCAATTTTCTCAGATAAACTC
TATGCTGTCCTCCTATTTTTGAAATAGAAGGTGAGGTGCTCTTTAGAGGG
TGACCATTTTGATGCATGGattaaaacaaagaattttgTTTGCTAACTTT
TTCTGCATTCGAGATTTAGTGTCATCCCCTGGATGCTAAAAGTACATCCC
AGCGGAGTTTTAAAATTCAGCCGTCCACTTTCTAAGGCCTAGGGATTTAT
GATATTGATGATGTAATTTTTTCTACGTAAACACCCCGCTTAATATCAAG
TAGtggtaaatttaaaatttgtcaCTACTGGTAAAAACCGGTGTGTTTCT
ATAGAAAACATTACCTAATGAATATCAGGATACCAATgaaattcaaaaca
taaatgAAAGAGGttgcttatttaaaaaaaaatactacttGTCCTAGATC
AATTAGATCGACAGAGAATTTAGGAAGCTTTGATCaatcaaaattgttta
caaTGTATGAGGATATTAACATCATCTGCAACTAACTTTAGTTTCCTAAG
TATCTACTGGAGTCTAAGCCGCCTTCAGGTCCGCCTCCGCCTCTCTACCT
TACACGTGTAAAGGATGTACTTAGTGAATCCTCTACCATAGAAAGTTGtt
ttgcgcaaatatgtaattattttgcgcagatatgtaatttcggGCTGCGA
AAATGTATATTTAGATTTCTGCCCAGACATGTAAAACACGATCTTTAAAA
TTAATGGTACccctttgatatttttttaccaTTACCTTTACCCTTGTTGG
ACTACCTATCAAATACAAGAAGTATTAATTCCATGTAGAAatgtttttgc
aaaattttttatcttataAGCATGAACTTTAtgttttcagaggaattttt
cgacatctttactcttaggttccaaataaacgggggggggggggttcgaa
taaacgggggggttggaaaattttctagattttaataaacggggggacct
aattgccgggggggttggaaattgtacttctgaaaataaggggccttctc
tttgacagctgaaaatattcttagagattaataaacggggggggtcctaa
taaggtccgggggggttggaaaattttctagattttaataaacgggggga
cctaattgccgggggggttggaaattgtacttctgaaaataaggggcctt
ctctttgacagctgaaaatattcttagagattaataaacggggggggtcc
taataaggtccgggggggttggaaaattttctagattttaataaacgggg
ggacctaattgccgggggggttggaaattgtacttctgaaaataaggggc
cttctctttgacagctgaaaatattcttagagattaataaacgggggggg
tcctaataaggtccgggggggttggaaaattttctagattttaataaacg
gggggacctaattgccgggggggttggaaattgtacttctgaaaataagg
ggccttctctttgacagctgaaaatattcttagagattaataaacggggg
gggtcctaataaggtccgggggggttggaaaattttctagattttaataa
acggggggacctaattgccgggggggttggaaattgtacttctgaaaata
aggggccttctctttgacagctgaaaatattcttagagattaataaacgg
ggggggtcctaataaggtccgggggggttggaaaattttctagattttaa
taaacggggggacctaattgccgggggggttggaaattgtacttctgaaa
ataaggggccttctctttgacagctgaaaatattcttagagattaataaa
cggggggggtcctaataaggtccgggggggttggaaaattttctagattt
taataaacggggggacctaattgccgggggggttggaaattgtacttctg
aaaataaggggccttctctttgacagctgaaaatattcttagagattaat
aaacggggggggtcctaataaggtccgggggggttggaaaattttcgaaa
aattaacaagcggggggggccgtttatttggaacctaagagtacaggaac
tagcagtaagttttatgttctttgaatatgttttgttatgtttttggACC
AATATAGTTTGATTTCCTAAAGATCACAAACAAGCGAGGGGTTCCTTTAA
aatggaaatatttatttttatcataagcatcaactttataagaaaataat
ccataacttttgaactaacAACTATTAGCAtttggtgattggttctttca
aagcaaacatggaatagcgcctaaaatggaaatattcatttttcttacaa
gcatcaactttttaaaaaaattatccataACTTTTCAACAAAGAGGTATC
ATTTCTTTAACCTTTGTTATAAACTCACTTGGGACAAGTTCCTTGCTGGG
GAGATAATATTGTGGAAATGGAAATACCTTTATACTTTAGAAATTCAGAG
GTCACACACACACAGTCTTTCTGTAATTTTTGAATCTTGAAATTGACGAG
GCATCGGAAATATATTTCCATTTTCACCTTTGACATTTTGTAATAAGAAG
TTTCCTTCCAgtatattttgaattcattcttgaaaagttttgattGAATT
TAAGTGTATTATTTTTACGCGGGTACTAAATTTTCGCGTGTCATCAATGT
CACTGTTTTAAGCAAAATGTCGCAAAATTTAGTACTGAAAAAACTTAATC
AAGTTAAtccaaaatcacgaaattcttgaaaaaagaagagaaaatgattt
tttcaagtGATATCTTGTTACAACTTTGACACTAGCTTCAGTTTGTCAGT
AAAGAGGAGgatgataaaatttaaaattgcttTTGTGTGCAGGACATATT
CAAGTTGTAATTAAGattatttttattacaaaacttttGGGCATAAAATA
TGATCCAAATTAACCACAATTGTGATTTATTCTTCTGCTTGTATTAGCAG
ATCATTTTGGAAAGTAGTCTTATGAGTCATTGCTTAAATTTTCATCGTTA
GGTTAAATATGGCCaagttttgcaaaattttgtaaacatttgaTGCGAAC
AATACGCTCACATACATATAGCTGAAGAAACCAGACAATGTGATATCCAC
TGGGAGTAGAATCGATAAATAGAAATTTTACTCAACCAAGAAGgtgaatg
gggttgttatacatcgttggaactaatctataaaccactgaaattatgtc
aaaataagtccaaaaatactttcctgctaaaaatactacgaacgaataag
aaagtataacaaaataaagaaaatcggCTCAAAACGGAGGaggttgtttt
tattgaaaaaacgagatttttggtgtttttgaaaaaatatataacgaCTT
GAAATCATCTCTCTCTTAGAACAgcttagaatcatttttatcaaaCACAA
AATCCTAAATATCCTGAATATACCTATATATaataaatgaaacataaaaa
gcctTGTGATGTGCAACCAaatccaaatcaaaataaaaaataaaacacat
ttttctttaCGATATTTAGACCACTTTACGTGTCTTTTTCAAGCCtatta
taccgggtgacccacgaaaaagtatgTATATGTAACCTATtgcttacatg
ttttttttttataagcataacgcttataagcatatgaaggctcagatttg
cagaattcctaagcataacatgagcatgtatgtcagcctaaaatattttt
caactggtaatttttatctgtttttgtttcactTTTAACTTGTTTGGTAG
AGgtagggtggggcgtcaaatgtcaaagtcaaaaaattcaagatgtagtg
tttttttatgaaaatttaacctattgtgaggcattctgcgcaatttttaa
ggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNTACCCTTATCCTAAACCCAaaggattttgatttccctggagtattt
ccagaaggctatcactgcaaaaagattttaggttcatgtttattgccatt
tttaagatatttccagtcaaaaatgggatttttgcttgaaatattgcgtt
ttatcaggaatttcaattccaaaggCGGATATACCCAAACCCCAAACcca
gatgattttgattttcctgcagtatttccagaatactttcactgcaagaa
aattcgggcccatgtctattgtcattttagagattctttcagttcaaatt
tgggtttttgcctgaaaaatggctcttagcagggattttatttccataat
ggcggacatagatgcatcccagacccaaatgattttgatttccctggagt
atctccagaatactatcactgcataaaagatttcagtcagcatttgaACT
CAGTTTGTaaaagcttgccttaaaaaatgctattttttgataaatatgat
tttttttgctaaaaagcgatttctgaagacgccattatgaatttttgaaa
aaagtgaaaaacttgaaattcattttgcttaaagactttattgaagactt
ccatctctgaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcagaatgcctcacaata
ggttaaattttcataaaaaaacactacatcttgaattttttgactttgcc
ccaaaaatgactgttgacgccctaccctagtagaggtcaagtaaaaaata
agatatTCCACgactagctacattccactgctcccaaaatctgaaaaaaa
attttacaaaatttctgaaatttcattaaaaaacttggctcggggtgaat
cataagcataattcataagcatataataagcataaactatgcctggatgc
tttgagaacttaagcatacacgagcctgaccaaggggcatacacttgctt
ataaaaaaaaaaacatgtatgccCACAAAGTGTACAAGTAgatttaaatt
tgaccaaattgttctctacttatgagcttttaaagtcaaaattcacttta
cggaaagtgtaaaaaacacgcaaaaaaggggtatcaaatttggtattttt
agacgtttttgatatacagtttttgaaaaaaatctatgaaagcgccaatt
ttttttataaaaacttgtcttgttttaaacaaaaattactttcaaaggtg
tttttattaattattaatgtcataaaactcgttagataagtcaatttgta
agtgattttccNNtcataagtagagaacaagttggtcaaatttaaaaagt
gatagctcaaattttaagttaggatatctactttctaaatatcaaaactc
caagcattttgggacatttgttcggcctcaagacgtcgggaaacgtctca
actttttcgtgggtcacccggtatataaaTATGCCTCTCCTTCGCTGGAG
TTGGACATTTGTTAATCAAAATAATGATGCCAACAAACtcacagcaaaaa
aaaataaaaccacaCTTAGTTTGTCGCCAGTAATAGAAGCGGATATAAAT
GTTGACAAaatttgcatttatttttcatttatatgTGACCCATtaacaaa
ttgaaaaagattttgaaaatgatgacgtcatcaaattttgaaaataagaa
ataaagcccagaaaaaatcttcatggaaaatttcaaaccagCAATTGTGT
AAAGGCCAGCCCTtcatctttcagaatcttcaaacagaatctaaatatct
tcATTGGTTTGACTGTGacagacatttttgtaaactatatatttgggctt
ttttttcgataggtggaaattttgtgtgaGTATCGATCATATCGATCAGA
TATATATGCATTAAAAATCgaccgcatgagagcttttttccttcacccgc
attccggaaacactacatttttttattttcgcctaggGTTAAAACTTTTC
CCAATTGACGAGGGCTGTACTTAAAATATCGCCCAACGTACAGTCCTCAT
GATCCGGTCATTTTTGTATAGGGTGGGCAAAAAAACATGGTCAGATAATT
TGTTCTACTTGAGACATTTTTATCAAGTTTCTGACAATACATTCCCCGAC
CAAATTTCTTTGTTAataatttcctttgttttaaatgttattTATAAGGg
aaacatccccttctcacagacctggtaggattttttcaagcagtggggat
aaaaatatcggACTAAAACTTGAGGGTGAttgatacacccctgtgtcaca
ttCCCATTGGGATCCCagccccattggaaatttggtaaaaatttcgtccc
cggttgaaaaataccctggaaattcaaccccactggaaaattgactttgg
tttcatccccattcaaaattccaAGCTCAAAAATGGCACtacaaaaccat
ccccactgtatttttcaaccttgaaacaatagaatttccattGAAGGtat
aataggaatttttatccccactgagacaaaaggttccaccgggactgtga
gacaggggtgttttttcatGTATTCCGTATTCCGTATTCATGTATTACCG
GCTTGGGATTTCAATTATCTtgtaagtcagaaaattcagttggaatgGGA
AAAATAGCCCACCAAAATTGCCCACCCTGTATTagtatgataaaaataaa
taaaaataataaaaaataataataaaaataataaaataataaatagtATG
AACTGAATTTCTCCCTTacattattttttgcttaatttcTACTTTGTATG
CATTAGTCGTGTAGCATGCTAGATTATGTAATTAGCGTTATTTGACCTCG
CCGTTGTTCTGTTATGTGAAACCATTTGTAAAAAGAAGTAAACAACTCAC
CTTGCAAGATAACTACTTGTAATAAAATTGAagaactacagttgacgctc
tctaattcgatcttcaaggagaattggattttcatcgaataagggagctt
atcgaataagggagcgtcatTTATGAGAGTTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAgtcatttatg
agagtttcttgttgacggggactttcaatttcatcgaataagggagccta
tcgaatagtagaacgtcgaattagagagcgtcaactgtattattttctta
tttgaaattCCTTGCTGAAATAATACTCAATCTTATATTATTAAGTACCT
ATCTTTTAAAATCACTttgaatgattcattttatcaAAGATAGAAGAACA
TCTAGATAAAATGAACAGaacatgttctttttatttgttaatGGTTCATA
GATTTTCGCCTAATCAACTCAGGtaaaggttcttataaaaacattaaaaa
tttgtTTGTGGTTTGGTTTCTAAGTAAAATATGAAACCGTTTATTACTGA
CGTCTATAGCCATTACCGTTTGCAAAGCTGGGTAGTTATTTGGCATGAAG
GCTTTTTTTCATGTGTGAGAAGTTCATGTTTGATATTGGATATTTTTGTT
ATGAATGAAACTAGCTGTAATCGAGATACAGTTATCCTTTGAATGTCGGA
TATGCCAAAATCAAGTTAGCCTCTTCATACTAATTTTCAAAAGTCATTAT
TAGTGCTGGTTTGGTTAGCAAAGCCAGTGATGGAATCTGGCAGTGGAATT
TACTTTAATGAGATAAATTCTCGccaggattaaatttcgcagttTCTGCG
GAATATGGTAAAAATACTTATAAAGTACACTGGGCGAAAAGTCAAATTTC
CAATACATTTGAAATCccaaaaaattcctaaaaatgtctggaaattccag
atttttggAACTTTATGAACATATGGAAANNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNTCATCTTTTTGGGGATTTCTTGAGGAatggaaatatcaaat
tttgcaaaattggaAAGCTCATTGTGtgacattttctaaatttccaaaat
ttaaaatatgaaatttcctggtcttattttatgttttaaaattcatcttt
ttgggGATTTCTTGAAGAATGGAAATGTCAAGTTTTCCAACTTTGGAAAC
TCTACTATGTGACATGTTCTAAATTCCCAAAACGTTGAAacctcaaatat
tttctggtattCTTTTCAATCGAAAGGTCATCTTtaacattttcattgaa
aaaatctacTACATATACAGTACATTATATCTTTATTGTAACATCTTTca
tttcaaagataaaaaagcTAATATGTTCTAAAAAATCTGCCGAATCTCCC
ATCTCAATATCCATCCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaaatttcaaatttcaaatct
agAAATATCAGTAAATATCAATTTTCTGATCTTTCAACAAActgaatgtt
cagattttgaaatatttggaaacatgactttttaaaaaaaaaaaatccag
gaaatatgaacttttcgaaatttggaattGTAGGAAAGATGGCTTTTCAC
CCAGTGGTATTGTCTCCTGATAATGCTATCCGCGAAATAAAGTCCCCGCA
AGATCTTATGACTTAGTGGGCGAGCTCAACCGTGAAATTTAAACCCTGTT
TAATACTACTAAAATATGTTGATATACCAGATATTTCAGCTTTTTCTTgt
tcagttcttttgtttaagtTTTACATCATCatttacattttcaattttct
tcgaTGTAATTTTTACATGGTGtgttatttttttatgactaaaccccctt
ctcatagacaTCGTAGAATTTTCTCAGCCAGTAGTGGGTGAAACTAACGG
ACCAAGACTCGATAGAGATTGAAATTCCCAtggttttttatggctggagg
cTCGAATCAATTGTTTTCGAGCTAGAAAATTCAGTATGAATGGAAAAAAT
ATCACAGCAATATATTTTGAAGTgaggaaaatttgataaataacctaaaa
caataaaaataaaatatctcttGGACCGACttcttcaaaattaagtttca
aGTGACCGACCGAAATTTCAATGTCAACCCATTTTTATGAGCTGACAATA
TTGTTTTTCTTCAgaataagcaaacaaaaatgGCTACTGCGCATATTAAG
AACGATCTCGAAGCAACACTTGATGATCTTTTTATCCTTGACGAAAAGGC
GagcaagatttttcaaaacatcaatCACCGATGGGTATACAATAAATTGG
ACAGGTTTAAACTTCACCCTGAACTTGGAGAAAAATTTCGTGTATTCTTA
GATGAGCAGCTCTCTGTTAGTGGTAGTATCGAAGAAAGAGCGTCCATCTG
CAGATGGTTTATCAAGAAAGGCCCTCAAGACCCAATCATCACCATGGAAT
TGGACAGTATGTATTGTGTTGGTGAAATCCCTTCTCTGGACACATGTCCT
GATGTGGAAATTATTCAAGAGCATTTGGGGTTCTATAAGATGAAACAATC
AACTATCAATTCTTGTTATGAAATGGCTTATGATCCACAGATTTTGGAAG
CATTTGCAAGCACTGAAACGTATAACCCAAGGCGTGTGATGGTTGGTGGT
CATGGTGGAAGTGATGAACCTCCCTCTACTAGCGAGAGTAATCGAAAGAA
AATGCTAAGCCTGTTGGAAGAATTGAAATCTGACGCCAATTGTTACCTTC
GTGTTGACATCATGACGGAAATTCTTGGTCTAATGATCGTTGATGGTAAA
CAAGATGCAGAGAATACGAAGAGAGAAGGTCCTTCTCTTGAATGTGAAAT
GCATTTGAATTATACGCTTAATATGACGTTGGGTGAAATGGCTGAAAAAT
GTGGATGGCCCATCAAAGAGTATTGGTTTCCAGCGTCCGCATTAGATGAT
CTGTCTAATGGAACGGAGGAGCCTCCAAGGATGAAAAGATGCGTGGATAA
TATCGGAGATCTCATTTACCGAGCTTTTCCTGATAACTCGTCAACACCTG
ATGTAACTGCGATGTCCAAAATTCTACAAATGTTTCTTGAGAAAGCAGAT
TGTATATCGTCATTGATACCACTGATAATCGAAATAGCTGGAGTCATTTC
CAAACGAAATTTCATGccatttatttgtttcaatgaGTTCGGTCCACTGT
TCTTTGATAATGTCCCAAGCTTGAAAGTTCAGCAATGGCCTGGAATCGCC
GACAAGTTTTTGAGCAGAACAGGGAAATTTTGGCCGATGCAAAATATGGT
TGATTTGATCGTCGCCAATGGTTGTCACATCGTACCCAAGTCCTTTGAGG
GTGGTGACAAGAAAGCTGATTGGAGAATCTCCTTCTCTGCGGCAGGTTCT
TCCAACTctaatcttattttttctaattacTCGCTCACGGATTGAGCTTC
CTAGATAGAAATTTAGGGGGGATTTTGGATGTCAATTTATGGATGGTTTC
AAGGTTTTTCTAGTTTGACAGCTTTAGTATTAAATTCTGACTTTTGGGAC
GGCCCGGAGGTCCTATCAACTAACTTTTGTTCGTCCATCTGCCTCTTATC
AGCTTTTctcatttgtttttttctaattttttcgcACTAAGGGGCAAAAT
AGCGATACCTAAAATGTTATTTTGAGAAAAGATTTGGATTTGGTtcaaaa
aaagcctaaaaatggggtttttagTTAAGCTTTTACTTATATTTTGTATA
AAGGAAGAGGGCATGGTTATCTAAAAAGTGACTGAAACcgttttttccgg
aaaatttttttgagacgCATCGGATTACTGGATGACCTGATTTATGTTTT
Tagggaaattgattttttttcactatgatgtaaaatggttataatattta
aaatctgacagaacccaatcttcaaaaaaacatttttttgggcaaatttN
TCACTATGATGTAAAATGgttataatatttaaaatctgacagaacccaat
cttcaaaaaaagatttttttgggcaaatttgggtcaaaaaatgtagaaaa
gtaaggtttttttattttgtgcaCAATCCTCTCATTGTTCtttcctgatt
ttttttcataatgatGCCTAATTGTAATCCTCAAAATGGTACTTCaagat
tttcaatgaaaaatatttaggaagaTTTGGACCCAATTTCGGACTTTGTC
AAAATACGGTTCAATCAtgacaccctcttctcacagacccactgggaccc
cttctcactggaaaaaatgtccaaaatatcgtccccggtggaaaattatg
ctctaatttttgtccccgctgaaaataatcaaataaatcaatcctcgttg
caaaatattatgctattttctcCATCCCCACTAAATGTTtgacttttaaa
caaaaaaaattgaaatcaccagccataaaaaaattgCAATATCAATTCCC
TTtgagttttagtccgttatttttaaccaaactggctgaaaaaatcctac
tgggtctgtgagaagggggtgtatcatgCATCCACTCATGCACTTATGTc
agacttattttgacatataAAAGAACTTCCGCATTTTCTATCTTAGAATT
GGAGCTCACCAAAATCCAGACCGAAAAACATCGAAAATGTTACCTAGTGG
CGAAGTGTATTTACTACGCACGCATCAAATCATCAGTGACAGATCAAGAC
AAATCACTGCCTTCCTATTTCTTAAAAACAACATGGTTCAATCTTCTGGA
GCAACATCCTGTATCGTGGTTTGAAGATCGTACAATATTCGATATTATTG
GTGAATTGTATGGTGAACTAGCTGTTTGTTTTGGAACAGGATATATGGAA
AATATCTTTATCAGCAAAATGAACATCCTGAGAGAGGTAGCCTTTTCCTC
aagtttttctttcttgtttcaTCGTCTTTGCATCAAATCAAGGACTTCCT
CGCCCGGGGGACACTCAGGGAAAAAATGTCCAAACTTctcaaagtgcact
gtaaaaCTAGCCAGTTATTTATGGAAAGGTCAAATAACCTGAATAAAACC
CAGTgggatacttaggcaaatggagggtacgggtatgtgccgtcCTTAGG
GTCCCTCTATGGGTAAAAAAAGCCAAAAGGCTGTAATATCTATTCccaaa
aagcctaaattttacgaataaagtcccgctaagggtcccgaaattaaaaa
aaaaattggtttattTGTCTCGATTTGAGACcccaaaatttgtgattttc
aaaTATCGGGCGGCACTCTTTCCTTTGAGTATTTTGCTTTCAAGAGTCTT
TTGTTTTGTAAGGTCGATCGCTCAAAGTTAGAAGAAGCTGAGATAATGTG
CCGTGCAATTGCTGTCGATCCGTCTGCATATTTACCGGATGATCTTATCC
ACGTGATGAAAGTTGGTAAATCTGCCTTGAAATTTGGAGAGTATATGCTG
GAATTCATGGAGAAAACAGATTTAAAAATGCTAGATGGAATTTATAAATT
GATTCATCCTCCAATTAACAACAGTGTTGAGAAAGTTACGTCAAAACCGG
CTATGGTTGGTATTGTGTATGACAGTGACAGCGAtttagattaatttttt
ttgatcgtATTCTTGGACCGTGTATTGTTCTTTGTTACTCTTTGTATATA
GATAAAAACTTACGttcgaattttattttgatagaaaaaataGGGCACTT
TCCCATTAAAACGcctgtatcacagacccgcTTGGACCCCAGCCGActga
aaatttggtaaaatttcgtccccggtgggagaATATCCTGGAATTGCAGC
ACCACTGGGAAATTAACTTTGACTCTCCATTTGcgattcaatgtttaaaa
attgaacccatctgggatttcaataggaatttttatccccactgaggaaa
aaagttctacttgggctgtgagacagggatgtacaTTACGATAACTTTTA
GCGAATTTTAAGCCATTCAACAAAGTATTTTTAAGaatgattttgataat
tttttggtAAATGCAGTTCTTACTTCTTGGTCACTTTGAACGTTCAATTG
TTTTCGTCATATTTTTGTTGGTTTTGTACTCGAATTTAAACTTCTCTTGG
TACACTGTTTAAAAGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034055XLOC_034055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053943-exon-scaffold_237-1491911889:471517..471632TCONS_00053943-exon-scaffold_237-1491911889:471517..471632Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1510915933:471517..471632TCONS_00053943-exon-scaffold_237-1510915933:471517..471632Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1575043694:471517..471632TCONS_00053943-exon-scaffold_237-1575043694:471517..471632Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1491911889:474061..474325TCONS_00053943-exon-scaffold_237-1491911889:474061..474325Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1510915933:474061..474325TCONS_00053943-exon-scaffold_237-1510915933:474061..474325Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1575043694:474061..474325TCONS_00053943-exon-scaffold_237-1575043694:474061..474325Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1491911889:474762..474847TCONS_00053943-exon-scaffold_237-1491911889:474762..474847Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1510915933:474762..474847TCONS_00053943-exon-scaffold_237-1510915933:474762..474847Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1575043694:474762..474847TCONS_00053943-exon-scaffold_237-1575043694:474762..474847Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1491911889:475194..475369TCONS_00053943-exon-scaffold_237-1491911889:475194..475369Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1510915933:475194..475369TCONS_00053943-exon-scaffold_237-1510915933:475194..475369Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1575043694:475194..475369TCONS_00053943-exon-scaffold_237-1575043694:475194..475369Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1491911889:492413..492702TCONS_00053943-exon-scaffold_237-1491911889:492413..492702Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1510915933:492413..492702TCONS_00053943-exon-scaffold_237-1510915933:492413..492702Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1575043694:492413..492702TCONS_00053943-exon-scaffold_237-1575043694:492413..492702Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1491911889:493129..493935TCONS_00053943-exon-scaffold_237-1491911889:493129..493935Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1510915933:493129..493935TCONS_00053943-exon-scaffold_237-1510915933:493129..493935Clytia hemisphaericaexon
TCONS_00053943-exon-scaffold_237-1575043694:493129..493935TCONS_00053943-exon-scaffold_237-1575043694:493129..493935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:471517..493935 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53206	1.33017	0.749457	0.557079	1.27032	1.38395	1.10906	1.39907	0.831629	0.519191	0.539243	0.156189	0.240542	0.262134	0.0907358	0.260159	0.0496349	0	0	0.127489	0	0	0.470667	0.458136	0.695522	1.10829	0.105822	0	0.422483	0.174237
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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