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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053944 ID=TCONS_00053944|Name=TCONS_00053944|organism=Clytia hemisphaerica|type=transcript|length=158bp
TTTCTCTGGAGATGACCCATTCTTTCGATACAAGAGTACTTTTAGCAGCT
TAAAATTAACAATATCATAATGTTCAAGAGGAAACCAAAAGCAACTATCT
GAGAAGaTTATTGATATCGATGGAAAGGAACAACGtcaaacagagttgaa
tatgcaaa Run BLAST on NCBI transcript from alignment at scaffold_237:500486..502346+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053944 ID=TCONS_00053944|Name=TCONS_00053944|organism=Clytia hemisphaerica|type=transcript|length=1861bp|location=Sequence derived from alignment at scaffold_237:500486..502346+ (Clytia hemisphaerica)
TTTCTCTGGAGATGACCCATTCTTTCGATACAAGAGTACTTTTAGCAGCT
TAAAATTAACAATATCATAATGTTCAAGAGGAAACCAAAAGCAACTATCT
GAGAAGGTATGTTTTCGTATATTtgacagttttgtttcatttaaaaCGAG
CTCTTTTTTTGGCACCAAGTCAAAAAGCTTACACTTTttcaaatctgtat
gagaaaggcaactgcatacacttgatttaaaatttcctaCACAAATTCTA
AAGCGAGCATAattctttgacaaaaaattatcactttttgaaaggataga
tatggtatgttgttgatgcaaggggtgctaattttggttgattgtttcgt
ttttcccatgttcaacgtacgaaccgtggaaacgtattctttcttactca
aataagaaaatgatcttttataatccattaaacaatcttccaaaagcaat
gTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCGTGGAAACGtattctttcttactcaaataagaaaa
tgatcttttataatccattaaacaatcttccaaaagcaatgTGTTACATT
CTAAGAGCAACTCGACGAACGTCGTGTTTATGAGGCCCTGGACTTAACGA
CATGCCATTTTTCAATGATATTGGCTTTTAACATTCCAATGAAAAGTTTG
CATTATTCaagctataatttttgaaaaggggtGCTTTTTATTCTTGTAAA
AGCCTTCAATTGTAAAAATGATGCTCTCAAATGATAAACCTTATTGTTTG
TGGTAGGAaagattgaatttaaaaagctgtggcttttttttattcaagaa
aatattatgtttcttatgtttatcaaaaatcactctgCTTTCTGGCCTTT
GTTCTttatttcaCTTAAGATTATTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATCATAATGTT
CAAGAGGAAACCAAAAGCAACTATCTGAGAAGGTATGTTTTCGTATATTt
gacagttttgtttcatttaaaaCAAGCTCCTTTTTGGCACCAAGTCAAAA
ACCTTACACTTTttcaaatctgtatgagaaaggcaactgcatacacttga
tttaaaatttcttaCACAAATTCTAAAGCGAGCATCattctttgacaaaa
aattatcaCTTTTTGAAAGGATAGATATGGTATGTTGTTTATGCAagggg
tgctaattttggttgattgtttcatatttcccatgttcaacGTACGAACC
GTGGANGCtaattttggttgattgtttcatatttcccatgttcaacgtac
gaaccgtggaaacatattctttcttactcaaataagaagATGATCTTTTA
TAAtccattaaacaatcttccaaaagcaatgTGTTACATTCTAAGAGCAA
CCCAACGAAAGTCGTGTTTATGAGGCCCTGGACTTAACGACATGCCATAA
TTCAATGATATTGGCTTTTAACATTCGGATGAAAAGTTTGCATTATTCaa
gctataatttttgaaaagggatgcttcttattcttgtaaaaacctccatt
tgtaaaaatgatgcTCTCAAATGATAAACCTTATTGTTTGTGGTAGGATA
AATGGAATTTAAAAAGCTgtggtttttttttattcaattaaatATTATGT
TTCTTATGTTCATCAAAAATCACTCTGCTTTCTGGCctttgttctttatt
tcatttaagaTTATTGATATCGATGGAAAGGAACAACGtcaaacagagtt
gaatatgcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053944-exon-scaffold_237-1491911889:500486..500591 | TCONS_00053944-exon-scaffold_237-1491911889:500486..500591 | Clytia hemisphaerica | exon |
| TCONS_00053944-exon-scaffold_237-1510915933:500486..500591 | TCONS_00053944-exon-scaffold_237-1510915933:500486..500591 | Clytia hemisphaerica | exon |
| TCONS_00053944-exon-scaffold_237-1575043694:500486..500591 | TCONS_00053944-exon-scaffold_237-1575043694:500486..500591 | Clytia hemisphaerica | exon |
| TCONS_00053944-exon-scaffold_237-1491911889:502295..502346 | TCONS_00053944-exon-scaffold_237-1491911889:502295..502346 | Clytia hemisphaerica | exon |
| TCONS_00053944-exon-scaffold_237-1510915933:502295..502346 | TCONS_00053944-exon-scaffold_237-1510915933:502295..502346 | Clytia hemisphaerica | exon |
| TCONS_00053944-exon-scaffold_237-1575043694:502295..502346 | TCONS_00053944-exon-scaffold_237-1575043694:502295..502346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:500486..502346 + |
Blast
The following BLAST results are available for this feature:
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