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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053945 ID=TCONS_00053945|Name=TCONS_00053945|organism=Clytia hemisphaerica|type=transcript|length=946bp
TTTCTCTGGAGATGACCCATTCTTTCGATACAAGAGTACTTTTAGCAGCT
TAAAATTAACAATATCATAATGTTCAAGAGGAAACCAAAAGCAACTATCT
GAGAAGATTGTTGATATCGATGGAAAGGAACAACGtcaaacagagttgaa
tatgcaaagtttatAGACGACGAATAACGATAGTTTTTCTGGAGATGACC
CATTCTTTCGATACTAGATTACTTTTAGCAGCTCAAAATTAACAATATCA
TAATGTTCAAGAGGAAACCAAAAGCAACTATCTGAAAAGGTATGCTTTCG
TATATTtgacagttttgtttcatttaaaacaagctctttttttggcacca
agtcaaaaactttacagtttttcaaatctgtatgagaaaggcaactgcat
acacttgatttaaaatttcctaCACAAATTCTAAAGCGAGCATCATTCTT
TGACAAAAAAGTATCACTTTTTGAAAGGATAGATATGGTATGTTGTCGAT
GCAaggggtgctaattttggttgattgtttcatatttcccatgttcaacg
tacgaaccgtggaaacgtattctttcttactcaaataagaaaatgatctt
ttataatccattaaacaatcttccaaaagcaaTGTGTTACATTCTAAGAG
CAACTCAACGAACGTCGTGTTTATGAGGCCCTGGACTTAACGACATGCCA
TTATTCAATGATATTGGCTTTTAACATTCCAATGAAAAGTTTGCACTATT
Caagctataatttttgaaaagggatgcttcttattcttgtaaaaaccttc
atttgtaaaaatgatgcTCTCAAATGATAAACCTTATTGTTTGTGGTAGG
ATAAATGGAATTCAAAAAGCTGTGgctttttttattcaagaaaatattat
gtttcttatgtttatcaaaaatcactctgctttctggtctttgttc Run BLAST on NCBI transcript from alignment at scaffold_237:500486..504223+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053945 ID=TCONS_00053945|Name=TCONS_00053945|organism=Clytia hemisphaerica|type=transcript|length=3738bp|location=Sequence derived from alignment at scaffold_237:500486..504223+ (Clytia hemisphaerica)
TTTCTCTGGAGATGACCCATTCTTTCGATACAAGAGTACTTTTAGCAGCT
TAAAATTAACAATATCATAATGTTCAAGAGGAAACCAAAAGCAACTATCT
GAGAAGGTATGTTTTCGTATATTtgacagttttgtttcatttaaaaCGAG
CTCTTTTTTTGGCACCAAGTCAAAAAGCTTACACTTTttcaaatctgtat
gagaaaggcaactgcatacacttgatttaaaatttcctaCACAAATTCTA
AAGCGAGCATAattctttgacaaaaaattatcactttttgaaaggataga
tatggtatgttgttgatgcaaggggtgctaattttggttgattgtttcgt
ttttcccatgttcaacgtacgaaccgtggaaacgtattctttcttactca
aataagaaaatgatcttttataatccattaaacaatcttccaaaagcaat
gTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCGTGGAAACGtattctttcttactcaaataagaaaa
tgatcttttataatccattaaacaatcttccaaaagcaatgTGTTACATT
CTAAGAGCAACTCGACGAACGTCGTGTTTATGAGGCCCTGGACTTAACGA
CATGCCATTTTTCAATGATATTGGCTTTTAACATTCCAATGAAAAGTTTG
CATTATTCaagctataatttttgaaaaggggtGCTTTTTATTCTTGTAAA
AGCCTTCAATTGTAAAAATGATGCTCTCAAATGATAAACCTTATTGTTTG
TGGTAGGAaagattgaatttaaaaagctgtggcttttttttattcaagaa
aatattatgtttcttatgtttatcaaaaatcactctgCTTTCTGGCCTTT
GTTCTttatttcaCTTAAGATTATTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATCATAATGTT
CAAGAGGAAACCAAAAGCAACTATCTGAGAAGGTATGTTTTCGTATATTt
gacagttttgtttcatttaaaaCAAGCTCCTTTTTGGCACCAAGTCAAAA
ACCTTACACTTTttcaaatctgtatgagaaaggcaactgcatacacttga
tttaaaatttcttaCACAAATTCTAAAGCGAGCATCattctttgacaaaa
aattatcaCTTTTTGAAAGGATAGATATGGTATGTTGTTTATGCAagggg
tgctaattttggttgattgtttcatatttcccatgttcaacGTACGAACC
GTGGANGCtaattttggttgattgtttcatatttcccatgttcaacgtac
gaaccgtggaaacatattctttcttactcaaataagaagATGATCTTTTA
TAAtccattaaacaatcttccaaaagcaatgTGTTACATTCTAAGAGCAA
CCCAACGAAAGTCGTGTTTATGAGGCCCTGGACTTAACGACATGCCATAA
TTCAATGATATTGGCTTTTAACATTCGGATGAAAAGTTTGCATTATTCaa
gctataatttttgaaaagggatgcttcttattcttgtaaaaacctccatt
tgtaaaaatgatgcTCTCAAATGATAAACCTTATTGTTTGTGGTAGGATA
AATGGAATTTAAAAAGCTgtggtttttttttattcaattaaatATTATGT
TTCTTATGTTCATCAAAAATCACTCTGCTTTCTGGCctttgttctttatt
tcatttaagaTTATTGATATCGATGGAAAGGAACAACGtcaaacagagtt
gaatatgcaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTCAAGAGGAAACCAAAA
GCAACTATCTGAGAAGGTATGTTTTCGTATATTtgacagttttgtttcat
ttaaaaCAAGCTCTTTTTTTTGCACCAAGTCAAAAACCTAacactttttc
aaatttgtatgagaaaggcaactgcatacacttgatttaaaatttcctaC
ACAAATTCTAAAGCGAGCATCattctttgacaaaaaattatcaCTTTTTG
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGAAACGtattctttcttactcaaataagaaaatga
tcttttataatccattaaacaatcttccaaaagcaatgTGTTACATTCTA
AGAGCAACTCAACGAAAGTTGTGTTTATGAGGCCCTGGACTTAACGACAA
GCCATAATTCAATGATATTGGCTTTTAACATTCGAATGAAAAGTTTGCAT
TATTCaagctataatttttgaaaagggatgCTTCTTATTCTNNNNNNNNN
NNNNNNNCAAATGATAAACCTTATTGTTTGTGGTAGGATAAATGGAATTT
AAAAAGCTGTGgctttttttattcaagaaaatattatgtttcttatgtgt
atcaaaaatcactctgctttctggtctttgttctttatttcaCTTAAGAT
TGTTGATATCGATGGAAAGGAACAACGtcaaacagagttgaatatgcaaa
gtttatAGACGACGAATAACGATAGTTTTTCTGGAGATGACCCATTCTTT
CGATACTAGATTACTTTTAGCAGCTCAAAATTAACAATATCATAATGTTC
AAGAGGAAACCAAAAGCAACTATCTGAAAAGGTATGCTTTCGTATATTtg
acagttttgtttcatttaaaacaagctctttttttggcaccaagtcaaaa
actttacagtttttcaaatctgtatgagaaaggcaactgcatacacttga
tttaaaatttcctaCACAAATTCTAAAGCGAGCATCATTCTTTGACAAAA
AAGTATCACTTTTTGAAAGGATAGATATGGTATGTTGTCGATGCAagggg
tgctaattttggttgattgtttcatatttcccatgttcaacgtacgaacc
gtggaaacgtattctttcttactcaaataagaaaatgatcttttataatc
cattaaacaatcttccaaaagcaaTGTGTTACATTCTAAGAGCAACTCAA
CGAACGTCGTGTTTATGAGGCCCTGGACTTAACGACATGCCATTATTCAA
TGATATTGGCTTTTAACATTCCAATGAAAAGTTTGCACTATTCaagctat
aatttttgaaaagggatgcttcttattcttgtaaaaaccttcatttgtaa
aaatgatgcTCTCAAATGATAAACCTTATTGTTTGTGGTAGGATAAATGG
AATTCAAAAAGCTGTGgctttttttattcaagaaaatattatgtttctta
tgtttatcaaaaatcactctgctttctggtctttgttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053945-exon-scaffold_237-1491911889:500486..500591 | TCONS_00053945-exon-scaffold_237-1491911889:500486..500591 | Clytia hemisphaerica | exon |
| TCONS_00053945-exon-scaffold_237-1510915933:500486..500591 | TCONS_00053945-exon-scaffold_237-1510915933:500486..500591 | Clytia hemisphaerica | exon |
| TCONS_00053945-exon-scaffold_237-1575043694:500486..500591 | TCONS_00053945-exon-scaffold_237-1575043694:500486..500591 | Clytia hemisphaerica | exon |
| TCONS_00053945-exon-scaffold_237-1491911889:503384..504223 | TCONS_00053945-exon-scaffold_237-1491911889:503384..504223 | Clytia hemisphaerica | exon |
| TCONS_00053945-exon-scaffold_237-1510915933:503384..504223 | TCONS_00053945-exon-scaffold_237-1510915933:503384..504223 | Clytia hemisphaerica | exon |
| TCONS_00053945-exon-scaffold_237-1575043694:503384..504223 | TCONS_00053945-exon-scaffold_237-1575043694:503384..504223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:500486..504223 + |
Blast
The following BLAST results are available for this feature:
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