TCONS_00053946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053946
Unique NameTCONS_00053946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053946 ID=TCONS_00053946|Name=TCONS_00053946|organism=Clytia hemisphaerica|type=transcript|length=825bp
CAATATCATAATGTTCAAGAGGAAACCAAAAGCAACTATCTGAGAAGGTA
TGTTTTCGTATATTtgacagttttgtttcatttaaaaCAAGCTCCTTTTT
GGCACCAAGTCAAAAACCTTACACTTTttcaaatctgtatgagaaaggca
actgcatacacttgatttaaaatttcttaCACAAATTCTAAAGCGAGCAT
CattctttgacaaaaaattatcaCTTTTTGAAAGGATAGATATGGTATGT
TGTTTATGCAaggggtgctaattttggttgattgtttcatatttcccatg
ttcaacGTACGAACCGTGGANGCtaattttggttgattgtttcatatttc
ccatgttcaacgtacgaaccgtggaaacatattctttcttactcaaataa
gaagATGATCTTTTATAAtccattaaacaatcttccaaaagcaatgTGTT
ACATTCTAAGAGCAACCCAACGAAAGTCGTGTTTATGAGGCCCTGGACTT
AACGACATGCCATAATTCAATGATATTGGCTTTTAACATTCGGATGAAAA
GTTTGCATTATTCaagctataatttttgaaaagggatgcttcttattctt
gtaaaaacctccatttgtaaaaatgatgcTCTCAAATGATAAACCTTATT
GTTTGTGGTAGGATAAATGGAATTTAAAAAGCTgtggtttttttttattc
aattaaatATTATGTTTCTTATGTTCATCAAAAATCACTCTGCTTTCTGG
CctttgttctttatttcatttaagaTTATTGATATCGATGGAAAGGAACA
ACGtcaaacagagttgaatatgcaa
Run BLAST on NCBI

transcript from alignment at scaffold_237:501521..502345+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053946 ID=TCONS_00053946|Name=TCONS_00053946|organism=Clytia hemisphaerica|type=transcript|length=825bp|location=Sequence derived from alignment at scaffold_237:501521..502345+ (Clytia hemisphaerica)
CAATATCATAATGTTCAAGAGGAAACCAAAAGCAACTATCTGAGAAGGTA
TGTTTTCGTATATTtgacagttttgtttcatttaaaaCAAGCTCCTTTTT
GGCACCAAGTCAAAAACCTTACACTTTttcaaatctgtatgagaaaggca
actgcatacacttgatttaaaatttcttaCACAAATTCTAAAGCGAGCAT
CattctttgacaaaaaattatcaCTTTTTGAAAGGATAGATATGGTATGT
TGTTTATGCAaggggtgctaattttggttgattgtttcatatttcccatg
ttcaacGTACGAACCGTGGANGCtaattttggttgattgtttcatatttc
ccatgttcaacgtacgaaccgtggaaacatattctttcttactcaaataa
gaagATGATCTTTTATAAtccattaaacaatcttccaaaagcaatgTGTT
ACATTCTAAGAGCAACCCAACGAAAGTCGTGTTTATGAGGCCCTGGACTT
AACGACATGCCATAATTCAATGATATTGGCTTTTAACATTCGGATGAAAA
GTTTGCATTATTCaagctataatttttgaaaagggatgcttcttattctt
gtaaaaacctccatttgtaaaaatgatgcTCTCAAATGATAAACCTTATT
GTTTGTGGTAGGATAAATGGAATTTAAAAAGCTgtggtttttttttattc
aattaaatATTATGTTTCTTATGTTCATCAAAAATCACTCTGCTTTCTGG
CctttgttctttatttcatttaagaTTATTGATATCGATGGAAAGGAACA
ACGtcaaacagagttgaatatgcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034056XLOC_034056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053946-exon-scaffold_237-1491911889:501521..502345TCONS_00053946-exon-scaffold_237-1491911889:501521..502345Clytia hemisphaericaexon
TCONS_00053946-exon-scaffold_237-1510915933:501521..502345TCONS_00053946-exon-scaffold_237-1510915933:501521..502345Clytia hemisphaericaexon
TCONS_00053946-exon-scaffold_237-1575043694:501521..502345TCONS_00053946-exon-scaffold_237-1575043694:501521..502345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:501521..502345 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58133	2.30951	5.95686	8.13308	3.00784	1.17523	0.685341	0.571855	0.156373	0.16202	0.422878	0.35289	0.261548	0	0.141399	0.318207	0.0864708	0.0443149	0	0.0917508	0.22274	0.280544	1.07875	1.16518	0.680194	0.51799	0.157945	0.0504201	4.98657	3.00322
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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