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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053959 ID=TCONS_00053959|Name=TCONS_00053959|organism=Clytia hemisphaerica|type=transcript|length=4593bpRun BLAST on NCBI protein sequence of TCONS_00053959-protein >TCONS_00053959-protein ID=TCONS_00053959-protein|Name=TCONS_00053959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp MLLQGQVMGEEDFHPFIEQCLPHVKSFGYAWFNLQAKKRKFYKKHEFRMSRun BLAST on NCBI transcript from alignment at scaffold_237:130750..158564- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053959 ID=TCONS_00053959|Name=TCONS_00053959|organism=Clytia hemisphaerica|type=transcript|length=27815bp|location=Sequence derived from alignment at scaffold_237:130750..158564- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_237:130750..158564- >TCONS_00053959 ID=TCONS_00053959|Name=TCONS_00053959|organism=Clytia hemisphaerica|type=CDS|length=24687bp|location=Sequence derived from alignment at scaffold_237:130750..158564- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053959 vs. Swiss-Prot (Human)
Match: NFIC (Nuclear factor 1 C-type OS=Homo sapiens GN=NFIC PE=1 SV=2) HSP 1 Score: 257.299 bits (656), Expect = 1.577e-73 Identity = 126/234 (53.85%), Postives = 162/234 (69.23%), Query Frame = 3
Query: 126 MGEEDFHPFIEQCLPHVKSFGYAWFNLQAKKRKFYKKHEFRMSTELLRQTKEELENQPYEEKQKWASRLLAKLRKDIKPECREEFINAVTGKSSNTECVISNADQKGKMRRIDCLRQADKVWRLDLVMMILFHATPLESTDGERLGKIPRCKHKILCVNPAHICIVAKELDLFLSNYLPQREV---------VGE---------------QPNILTTGVFERKELERYSRESIL 755
+ +++FHPFIE LPHV++F Y WFNLQA+KRK++KKHE RMS + R K+EL + E KQKWASRLLAKLRKDI+PECRE+F+ ++TGK + CV+SN DQKGKMRRIDCLRQADKVWRLDLVM+ILF PLESTDGERL K +C H +LCV P HI + KELDL+L+ ++ +R+ +G Q + +T+GVF EL + SR ++
Sbjct: 8 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKA-PGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240 The following BLAST results are available for this feature:
BLAST of TCONS_00053959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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