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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053960 ID=TCONS_00053960|Name=TCONS_00053960|organism=Clytia hemisphaerica|type=transcript|length=1470bp
CACATGTAAACAAAGAAGATCATCTCGCGATGTTGGATTTGATTTGACAA
ACAATTCAAACATATTTTCGTTGTCATCGATAAGTTTTCCATTAAATGAC
AATTCTATATGAAACCATCTGATGCCATATTTTTCTTCGATTGCTTTTTT
GACATCAAGGACATTCATTTCGTGATTATATTTAAGTTCTACTTTCATTA
TCTNCTATATTTTTCTTCGATTGCTTTTTTGACATCAAGGACATTCATTT
CGTGATTATATTTAAGTACTACTTTCATTATCTCTTCGGTGTATTGAGTA
GAAGATGTTTGTGAATCCATCATTTCTGGTGAATCTGTTGGTTGAATTGA
TAGTTTTGTTGATGGTATTGAAGGCTCTGGTGAATCTGATGCTGGGATTG
AAGGCTCTGGTGAATCTGATGATGGAATTGAAGGTTTTGGTGAATCTGAT
GCTGGGTTTGAAGGGTCTGCTGATAGAATTGATGATTCTGGCTGACTTTC
TGTTGGGAccgatggttctggtgaatctacTTTTGAGTTTGATAGCTCTG
GCAAATCTACTGGTGGAATCGATTTATCTGACGGAGCTGATGATGGGGAT
AATACTATTGGAttcaatggttctggtgaatctgaCAGTGGCATTGATGG
ATTTGGCGGACCCAATGTTAgagttgatggatctgatgACTTTCCTTGAC
GATTTGATAGTTCTGTTGTATTTTCTTTTAGAGATAATGGTTCTGTCAAA
TCTGCCATTGGAATTGATGGATCTGGCGAGCCTGATGTTAGATTTGACTG
ATCTGGTAACTTTGCTGGGCGATTTGATAGTTCTATTGTATCTTCGTTTA
GAGATAATGGTTCTGTCGAGTCTGATATTGGAATTGATGGATCTGGCGAA
CCTGATGTTAGATTTGACAGATCTGGTAAATTTGCTGGACGATTTGATAG
TTCTGCTGTATCTTCTTTTAGAGATAAGGGTTCTTTCGAATCTGATATTG
AAATTGATGAATCTGGCGAATCTGATGTTAGACTTGACGAATCTGGTAAC
TTTGCTGGACGATTTGATAGTTTTGGTGAATATGCTAGCGCTTTTGGAAT
TAACATTTCTGGTGAATCTGGTGGTATTGATGGTTTTGGCGAATCTGATA
TTGGAGTTGAAGGATCTAGCGATTCAGCTGGTGAAATAGTTAGTTTTGAC
GTATGTATTGCTGGACTTGATGGANGAAGGATCTAGCGATTCAGCTGGTG
AAATAGTTAGTTTTGATGTATGTATTGCTGGACTTGATGGACACACGTCA
TTCGTTTCGAATATTAATTTGAAAGACTCAAATTTAGCCAAATAGAAATT
CACCTCACCCATTTCGTTCTCAACTGCAATCATTTCCCTTCATTGAAAAA
AAGGATAAAAGTTTGAGAATGAATGACTATATTATAAAATAGTGCATAAA
TATTGTTTGTTACCAAAAtt Run BLAST on NCBI transcript from alignment at scaffold_237:215433..217034- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053960 ID=TCONS_00053960|Name=TCONS_00053960|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at scaffold_237:215433..217034- (Clytia hemisphaerica)
CACATGTAAACAAAGAAGATCATCTCGCGATGTTGGATTTGATTTGACAA
ACAATTCAAACATATTTTCGTTGTCATCGATAAGTTTTCCATTAAATGAC
AATTCTATATGAAACCATCTGATGCCATATTTTTCTTCGATTGCTTTTTT
GACATCAAGGACATTCATTTCGTGATTATATTTAAGTTCTACTTTCATTA
TCTNCTATATTTTTCTTCGATTGCTTTTTTGACATCAAGGACATTCATTT
CGTGATTATATTTAAGTACTACTTTCATTATCTCTTCGGTGTATTGAGTA
GAAGATGTTTGTGAATCCATCATTTCTGGTGAATCTGTTGGTTGAATTGA
TAGTTTTGTTGATGGTATTGAAGGCTCTGGTGAATCTGTTGGTTGAATTG
ATAGTTTTGTTGATGGTATTGAAGGATCTGGTGAATCTGTTGGTTGAATT
GATAGTTTTGTTGATGGTATTGAAGGATCTGGGGAATCTGATGCTGGGAT
TGAAGGCTCTGGTGAATCTGATGCTGGGATTGAAGGCTCTGGTGAATCTG
ATGATGGAATTGAAGGTTTTGGTGAATCTGATGCTGGGTTTGAAGGGTCT
GCTGATAGAATTGATGATTCTGGCTGACTTTCTGTTGGGACCGATGGTTC
TGGTGAATCTACTTTTGAGTTTGATAGCTCTGGCAAATCTACTGGTGGAA
TCGATTTATCTGACGGAGCTGATGATGGGGATAATACTATTGGATTCAAT
GGTTCTGGTGAATCTGACAGTGGCATTGATGGATTTGGCGGACCCAATGT
TAGAGTTGATGGATCTGATGACTTTCCTTGACGATTTGATAGTTCTGTTG
TATTTTCTTTTAGAGATAATGGTTCTGTCAAATCTGCCATTGGAATTGAT
GGATCTGGCGAGCCTGATGTTAGATTTGACTGATCTGGTAACTTTGCTGG
GCGATTTGATAGTTCTATTGTATCTTCGTTTAGAGATAATGGTTCTGTCG
AGTCTGATATTGGAATTGATGGATCTGGCGAACCTGATGTTAGATTTGAC
AGATCTGGTAAATTTGCTGGACGATTTGATAGTTCTGCTGTATCTTCTTT
TAGAGATAAGGGTTCTTTCGAATCTGATATTGAAATTGATGAATCTGGCG
AATCTGATGTTAGACTTGACGAATCTGGTAACTTTGCTGGACGATTTGAT
AGTTTTGGTGAATATGCTAGCGCTTTTGGAATTAACATTTCTGGTGAATC
TGGTGGTATTGATGGTTTTGGCGAATCTGATATTGGAGTTGAAGGATCTA
GCGATTCAGCTGGTGAAATAGTTAGTTTTGACGTATGTATTGCTGGACTT
GATGGANGAAGGATCTAGCGATTCAGCTGGTGAAATAGTTAGTTTTGATG
TATGTATTGCTGGACTTGATGGACACACGTCATTCGTTTCGAATATTAAT
TTGAAAGACTCAAATTTAGCCAAATAGAAATTCACCTCACCCATTTCGTT
CTCAACTGCAATCATTTCCCTTCATTGAAAAAAAGGATAAAAGTTTGAGA
ATGAATGACTATATTATAAAATAGTGCATAAATATTGTTTGTTACCAAAA
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053960-exon-scaffold_237-1575043694:216662..217034 | TCONS_00053960-exon-scaffold_237-1575043694:216662..217034 | Clytia hemisphaerica | exon |
| TCONS_00053960-exon-scaffold_237-1575043694:215433..216529 | TCONS_00053960-exon-scaffold_237-1575043694:215433..216529 | Clytia hemisphaerica | exon |
| TCONS_00053960-exon-scaffold_237-1510915933:216662..217034 | TCONS_00053960-exon-scaffold_237-1510915933:216662..217034 | Clytia hemisphaerica | exon |
| TCONS_00053960-exon-scaffold_237-1510915933:215433..216529 | TCONS_00053960-exon-scaffold_237-1510915933:215433..216529 | Clytia hemisphaerica | exon |
| TCONS_00053960-exon-scaffold_237-1491911889:216662..217034 | TCONS_00053960-exon-scaffold_237-1491911889:216662..217034 | Clytia hemisphaerica | exon |
| TCONS_00053960-exon-scaffold_237-1491911889:215433..216529 | TCONS_00053960-exon-scaffold_237-1491911889:215433..216529 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:215433..217034 - |
Blast
The following BLAST results are available for this feature:
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