TCONS_00053961 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053961
Unique Name	TCONS_00053961
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1500

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_237:215433..217034-

transcript sequence

>TCONS_00053961 ID=TCONS_00053961|Name=TCONS_00053961|organism=Clytia hemisphaerica|type=transcript|length=1500bp
CACATGTAAACAAAGAAGATCATCTCGCGATGTTGGATTTGATTTGACAA
ACAATTCAAACATATTTTCGTTGTCATCGATAAGTTTTCCATTAAATGAC
AATTCTATATGAAACCATCTGATGCCATATTTTTCTTCGATTGCTTTTTT
GACATCAAGGACATTCATTTCGTGATTATATTTAAGTTCTACTTTCATTA
TCTNCTATATTTTTCTTCGATTGCTTTTTTGACATCAAGGACATTCATTT
CGTGATTATATTTAAGTACTACTTTCATTATCTCTTCGGTGTATTGAGTA
GAAGATGTTTGTGAATCCATCATTTCTGGTGAATCTGTTGGTTGAATTGA
TAGTTTTGTTGATGGTATTGAAGGATCTGGGGAATCTGATGCTGGGATTG
AAGGCTCTGGTGAATCTGATGCTGGGATTGAAGGCTCTGGTGAATCTGAT
GATGGAATTGAAGGTTTTGGTGAATCTGATGCTGGGTTTGAAGGGTCTGC
TGATAGAATTGATGATTCTGGCTGACTTTCTGTTGGGAccgatggttctg
gtgaatctacTTTTGAGTTTGATAGCTCTGGCAAATCTACTGGTGGAATC
GATTTATCTGACGGAGCTGATGATGGGGATAATACTATTGGAttcaatgg
ttctggtgaatctgaCAGTGGCATTGATGGATTTGGCGGACCCAATGTTA
gagttgatggatctgatgACTTTCCTTGACGATTTGATAGTTCTGTTGTA
TTTTCTTTTAGAGATAATGGTTCTGTCAAATCTGCCATTGGAATTGATGG
ATCTGGCGAGCCTGATGTTAGATTTGACTGATCTGGTAACTTTGCTGGGC
GATTTGATAGTTCTATTGTATCTTCGTTTAGAGATAATGGTTCTGTCGAG
TCTGATATTGGAATTGATGGATCTGGCGAACCTGATGTTAGATTTGACAG
ATCTGGTAAATTTGCTGGACGATTTGATAGTTCTGCTGTATCTTCTTTTA
GAGATAAGGGTTCTTTCGAATCTGATATTGAAATTGATGAATCTGGCGAA
TCTGATGTTAGACTTGACGAATCTGGTAACTTTGCTGGACGATTTGATAG
TTTTGGTGAATATGCTAGCGCTTTTGGAATTAACATTTCTGGTGAATCTG
GTGGTATTGATGGTTTTGGCGAATCTGATATTGGAGTTGAAGGATCTAGC
GATTCAGCTGGTGAAATAGTTAGTTTTGACGTATGTATTGCTGGACTTGA
TGGANGAAGGATCTAGCGATTCAGCTGGTGAAATAGTTAGTTTTGATGTA
TGTATTGCTGGACTTGATGGACACACGTCATTCGTTTCGAATATTAATTT
GAAAGACTCAAATTTAGCCAAATAGAAATTCACCTCACCCATTTCGTTCT
CAACTGCAATCATTTCCCTTCATTGAAAAAAAGGATAAAAGTTTGAGAAT
GAATGACTATATTATAAAATAGTGCATAAATATTGTTTGTTACCAAAAtt

Run BLAST on NCBI

transcript from alignment at scaffold_237:215433..217034-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053961 ID=TCONS_00053961|Name=TCONS_00053961|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at scaffold_237:215433..217034- (Clytia hemisphaerica)
CACATGTAAACAAAGAAGATCATCTCGCGATGTTGGATTTGATTTGACAA
ACAATTCAAACATATTTTCGTTGTCATCGATAAGTTTTCCATTAAATGAC
AATTCTATATGAAACCATCTGATGCCATATTTTTCTTCGATTGCTTTTTT
GACATCAAGGACATTCATTTCGTGATTATATTTAAGTTCTACTTTCATTA
TCTNCTATATTTTTCTTCGATTGCTTTTTTGACATCAAGGACATTCATTT
CGTGATTATATTTAAGTACTACTTTCATTATCTCTTCGGTGTATTGAGTA
GAAGATGTTTGTGAATCCATCATTTCTGGTGAATCTGTTGGTTGAATTGA
TAGTTTTGTTGATGGTATTGAAGGCTCTGGTGAATCTGTTGGTTGAATTG
ATAGTTTTGTTGATGGTATTGAAGGATCTGGTGAATCTGTTGGTTGAATT
GATAGTTTTGTTGATGGTATTGAAGGATCTGGGGAATCTGATGCTGGGAT
TGAAGGCTCTGGTGAATCTGATGCTGGGATTGAAGGCTCTGGTGAATCTG
ATGATGGAATTGAAGGTTTTGGTGAATCTGATGCTGGGTTTGAAGGGTCT
GCTGATAGAATTGATGATTCTGGCTGACTTTCTGTTGGGACCGATGGTTC
TGGTGAATCTACTTTTGAGTTTGATAGCTCTGGCAAATCTACTGGTGGAA
TCGATTTATCTGACGGAGCTGATGATGGGGATAATACTATTGGATTCAAT
GGTTCTGGTGAATCTGACAGTGGCATTGATGGATTTGGCGGACCCAATGT
TAGAGTTGATGGATCTGATGACTTTCCTTGACGATTTGATAGTTCTGTTG
TATTTTCTTTTAGAGATAATGGTTCTGTCAAATCTGCCATTGGAATTGAT
GGATCTGGCGAGCCTGATGTTAGATTTGACTGATCTGGTAACTTTGCTGG
GCGATTTGATAGTTCTATTGTATCTTCGTTTAGAGATAATGGTTCTGTCG
AGTCTGATATTGGAATTGATGGATCTGGCGAACCTGATGTTAGATTTGAC
AGATCTGGTAAATTTGCTGGACGATTTGATAGTTCTGCTGTATCTTCTTT
TAGAGATAAGGGTTCTTTCGAATCTGATATTGAAATTGATGAATCTGGCG
AATCTGATGTTAGACTTGACGAATCTGGTAACTTTGCTGGACGATTTGAT
AGTTTTGGTGAATATGCTAGCGCTTTTGGAATTAACATTTCTGGTGAATC
TGGTGGTATTGATGGTTTTGGCGAATCTGATATTGGAGTTGAAGGATCTA
GCGATTCAGCTGGTGAAATAGTTAGTTTTGACGTATGTATTGCTGGACTT
GATGGANGAAGGATCTAGCGATTCAGCTGGTGAAATAGTTAGTTTTGATG
TATGTATTGCTGGACTTGATGGACACACGTCATTCGTTTCGAATATTAAT
TTGAAAGACTCAAATTTAGCCAAATAGAAATTCACCTCACCCATTTCGTT
CTCAACTGCAATCATTTCCCTTCATTGAAAAAAAGGATAAAAGTTTGAGA
ATGAATGACTATATTATAAAATAGTGCATAAATATTGTTTGTTACCAAAA
TT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034062	XLOC_034062	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00053961-exon-scaffold_237-1575043694:216662..217034	TCONS_00053961-exon-scaffold_237-1575043694:216662..217034	Clytia hemisphaerica	exon
TCONS_00053961-exon-scaffold_237-1575043694:215433..216559	TCONS_00053961-exon-scaffold_237-1575043694:215433..216559	Clytia hemisphaerica	exon
TCONS_00053961-exon-scaffold_237-1510915933:216662..217034	TCONS_00053961-exon-scaffold_237-1510915933:216662..217034	Clytia hemisphaerica	exon
TCONS_00053961-exon-scaffold_237-1510915933:215433..216559	TCONS_00053961-exon-scaffold_237-1510915933:215433..216559	Clytia hemisphaerica	exon
TCONS_00053961-exon-scaffold_237-1491911889:216662..217034	TCONS_00053961-exon-scaffold_237-1491911889:216662..217034	Clytia hemisphaerica	exon
TCONS_00053961-exon-scaffold_237-1491911889:215433..216559	TCONS_00053961-exon-scaffold_237-1491911889:215433..216559	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_237	supercontig	scaffold_237:215433..217034 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	3.06859	2.11591	0	0	0	0	0	0	0	0	0	0	0.310276	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00053961 vs. Swiss-Prot (Human)

BLAST of TCONS_00053961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00053961 (transcript) - C. hemisphaerica