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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053976 ID=TCONS_00053976|Name=TCONS_00053976|organism=Clytia hemisphaerica|type=transcript|length=815bp
GCCCTTTCAATCGAAATATCAACTGTCAACCTATAAAATGGCTGACTTTA
ACACTCCTAGAAAACGCAAACATAAAGATCTCACCGACTTGGTTGGCTTT
GTATCGTATGTGAGTCCTccaaagtcaaaatattttgaagttttcattCT
TGTACAAGAAAAAATGGAGAAAAGGCTGGTTGTATACGATGTGAATCAAC
ATGGATCGTTTTTAAAAACTGTAGATAAAGGAGTCACAATCACGCATGTT
TCAGGAGCAACCAatggtgatttttttttcactgatcAATCTAATATTGT
TTACATGTCACCACCTTTTGAACATTATGAAATCCCGATACAGATCAGCA
CAATCAAAGAAGCCATGACTGAGGTACATATGTTTTCTCGCCTTCATCTG
GAAGTCTTGATCACAAGTACAAACATACCTGGAATCAGCAAGGAAATGCT
TCCTTATCAACAGTTATTGGTTACTGACAACAGCTTACCACATCCAAAAC
CACTTACGGTATATTCAGACATGGTTGGAAAGTTTGAAGTTAACAACTCA
TACCGACTAACTCACATTACAGTGAGCAAATTCAATAGGAATCGCATTTT
GAAGGGTTCAGATCGCTCGGAACAAAGTGAACTGTTAGAAGGTGCTATCA
AGTTACCAGCTGTACCCACCACAATGAAAGTTGGACGTATATCCAGTGTG
GAACTGTCATCGTTAAAAGACATTAATCTCTGCAAACACTGTAAAAATCC
GGTGAAATACATTCGTTCAATTGTTACTTGTGAAACTTGCGACCAAGGAA
TGGCGCAATCAGATG Run BLAST on NCBI protein sequence of TCONS_00053976-protein >TCONS_00053976-protein ID=TCONS_00053976-protein|Name=TCONS_00053976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
PFQSKYQLSTYKMADFNTPRKRKHKDLTDLVGFVSYVSPPKSKYFEVFIL
VQEKMEKRLVVYDVNQHGSFLKTVDKGVTITHVSGATNGDFFFTDQSNIV
YMSPPFEHYEIPIQISTIKEAMTEVHMFSRLHLEVLITSTNIPGISKEML
PYQQLLVTDNSLPHPKPLTVYSDMVGKFEVNNSYRLTHITVSKFNRNRIL
KGSDRSEQSELLEGAIKLPAVPTTMKVGRISSVELSSLKDINLCKHCKNP
VKYIRSIVTCETCDQGMAQSD Run BLAST on NCBI transcript from alignment at scaffold_237:364612..365887- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053976 ID=TCONS_00053976|Name=TCONS_00053976|organism=Clytia hemisphaerica|type=transcript|length=1276bp|location=Sequence derived from alignment at scaffold_237:364612..365887- (Clytia hemisphaerica)
GCCCTTTCAATCGAAATATCAACTGTCAACCTATAAAATGGCTGACTTTA
ACACTCCTAGAAAACGCAAACATAAAGGTAATTATTAAATATTTAATAGT
GTGAAATATTTGGTCTAGGAAGAAAGGTTTTGTCTGAGAAGTGCTACTTT
GTTTTGAAAACCAGGATAAAAATTCATGCCAATTACTAAAACGGTACTGT
CCAAATTCATTTAATATTGGCCACATACAAACTTTTTTCCTATTTCACAA
AGCTCTAATGAGACTAATTTCGAGTGTAGTATAGTTTGTAGGCAGGGTTC
AATCGATGATGGAAAGTGTGGTGGAACATAGATCCCCTGTCAAAAGGGGA
AATTTCCAAACAAATCTTCTTCATGCCTTTCAAAGTTTTTATTGAATCTC
TCATCTTGAAGTTTGGAAAATTTGCCTGAAAGTTGAAAAAAATGTATCCA
TTTAGGGATTGAACCCTGCTGCCGATTTTGTAAATTATTGACCAAATTGA
TCTGAAGAGTCTGCTTTTACCTTTGTCGTTTATTTTAGATCTCACCGACT
TGGTTGGCTTTGTATCGTATGTGAGTCCTCCAAAGTCAAAATATTTTGAA
GTTTTCATTCTTGTACAAGAAAAAATGGAGAAAAGGCTGGTTGTATACGA
TGTGAATCAACATGGATCGTTTTTAAAAACTGTAGATAAAGGAGTCACAA
TCACGCATGTTTCAGGAGCAACCAATGGTGATTTTTTTTTCACTGATCAA
TCTAATATTGTTTACATGTCACCACCTTTTGAACATTATGAAATCCCGAT
ACAGATCAGCACAATCAAAGAAGCCATGACTGAGGTACATATGTTTTCTC
GCCTTCATCTGGAAGTCTTGATCACAAGTACAAACATACCTGGAATCAGC
AAGGAAATGCTTCCTTATCAACAGTTATTGGTTACTGACAACAGCTTACC
ACATCCAAAACCACTTACGGTATATTCAGACATGGTTGGAAAGTTTGAAG
TTAACAACTCATACCGACTAACTCACATTACAGTGAGCAAATTCAATAGG
AATCGCATTTTGAAGGGTTCAGATCGCTCGGAACAAAGTGAACTGTTAGA
AGGTGCTATCAAGTTACCAGCTGTACCCACCACAATGAAAGTTGGACGTA
TATCCAGTGTGGAACTGTCATCGTTAAAAGACATTAATCTCTGCAAACAC
TGTAAAAATCCGGTGAAATACATTCGTTCAATTGTTACTTGTGAAACTTG
CGACCAAGGAATGGCGCAATCAGATG Coding sequence (CDS) from alignment at scaffold_237:364612..365887- >TCONS_00053976 ID=TCONS_00053976|Name=TCONS_00053976|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at scaffold_237:364612..365887- (Clytia hemisphaerica)
ATCTCACCGACTTGGTTGGCTTTGTATCGTATGTGAGTCCTCCAAAGTCA
AAATATTTTGAAGTTTTCATTCTTGTACAAGAAAAAATGGAGAAAAGGCT
GGTTGTATACGATGTGAATCAACATGGATCGTTTTTAAAAACTGTAGATA
AAGGAGTCACAATCACGCATGTTTCAGGAGCAACCAATGGTGATTTTTTT
TTCACTGATCAATCTAATATTGTTTACATGTCACCACCTTTTGAACATTA
TGAAATCCCGATACAGATCAGCACAATCAAAGAAGCCATGACTGAGGTAC
ATATGTTTTCTCGCCTTCATCTGGAAGTCTTGATCACAAGTACAAACATA
CCTGGAATCAGCAAGGAAATGCTTCCTTATCAACAGTTATTGGTTACTGA
CAACAGCTTACCACATCCAAAACCACTTACGGTATATTCAGACATGGTTG
GAAAGTTTGAAGTTAACAACTCATACCGACTAACTCACATTACAGTGAGC
AAATTCAATAGGAATCGCATTTTGAAGGGTTCAGATCGCTCGGAACAAAG
TGAACTGTTAGAAGGTGCTATCAAGTTACCAGCTGTACCCACCACAATGA
AAGTTGGACGTATATCCAGTGTGGAACTGTCATCGTTAAAAGACATTAAT
CTCTGCAAACACTGTAAAAATCCGGTGAAATACATTCGTTCAATTGTTAC
TTGTGAAACTTGCGACCAAGGAATGGCGCAATCAGATCCCTTTCAATCGA
AATATCAACTGTCAACCTATAAAATGGCTGACTTTAACACTCCTAGAAAA
CGCAAACATAAAGATCTCACCGACTTGGTTGGCTTTGTATCGTATGTGAG
TCCTCCAAAGTCAAAATATTTTGAAGTTTTCATTCTTGTACAAGAAAAAA
TGGAGAAAAGGCTGGTTGTATACGATGTGAATCAACATGGATCGTTTTTA
AAAACTGTAGATAAAGGAGTCACAATCACGCATGTTTCAGGAGCAACCAA
TGGTGATTTTTTTTTCACTGATCAATCTAATATTGTTTACATGTCACCAC
CTTTTGAACATTATGAAATCCCGATACAGATCAGCACAATCAAAGAAGCC
ATGACTGAGGTACATATGTTTTCTCGCCTTCATCTGGAAGTCTTGATCAC
AAGTACAAACATACCTGGAATCAGCAAGGAAATGCTTCCTTATCAACAGT
TATTGGTTACTGACAACAGCTTACCACATCCAAAACCACTTACGGTATAT
TCAGACATGGTTGGAAAGTTTGAAGTTAACAACTCATACCGACTAACTCA
CATTACAGTGAGCAAATTCAATAGGAATCGCATTTTGAAGGGTTCAGATC
GCTCGGAACAAAGTGAACTGTTAGAAGGTGCTATCAAGTTACCAGCTGTA
CCCACCACAATGAAAGTTGGACGTATATCCAGTGTGGAACTGTCATCGTT
AAAAGACATTAATCTCTGCAAACACTGTAAAAATCCGGTGAAATACATTC
GTTCAATTGTTACTTGTGAAACTTGCGACCAAGGAATGGCGCAATCAGAT
CCCTTTCAATCGAAATATCAACTGTCAACCTATAAAATGGCTGACTTTAA
CACTCCTAGAAAACGCAAACATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053976-exon-scaffold_237-1575043694:365811..365887 | TCONS_00053976-exon-scaffold_237-1575043694:365811..365887 | Clytia hemisphaerica | exon |
| TCONS_00053976-exon-scaffold_237-1575043694:364612..365349 | TCONS_00053976-exon-scaffold_237-1575043694:364612..365349 | Clytia hemisphaerica | exon |
| TCONS_00053976-exon-scaffold_237-1510915933:365811..365887 | TCONS_00053976-exon-scaffold_237-1510915933:365811..365887 | Clytia hemisphaerica | exon |
| TCONS_00053976-exon-scaffold_237-1510915933:364612..365349 | TCONS_00053976-exon-scaffold_237-1510915933:364612..365349 | Clytia hemisphaerica | exon |
| TCONS_00053976-exon-scaffold_237-1491911889:365811..365887 | TCONS_00053976-exon-scaffold_237-1491911889:365811..365887 | Clytia hemisphaerica | exon |
| TCONS_00053976-exon-scaffold_237-1491911889:364612..365349 | TCONS_00053976-exon-scaffold_237-1491911889:364612..365349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:364612..365887 - |
Blast
The following BLAST results are available for this feature:
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