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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053984 ID=TCONS_00053984|Name=TCONS_00053984|organism=Clytia hemisphaerica|type=transcript|length=1119bp
CAATAAtcttaaatgaaataaagaacaaaggccagaaagcagagtgattt
ttgataaacataagaaacataatattttcttgaataaaaaagCCACAGCT
TTTTAAATTCCATTTATCCTACCACAAACAATAAGGTTTATCATTTGAGA
GCATCATTTTTACAAAAGGAGATTTTTACAAGAATAAGAAGcatcccttt
tcaaaaattatagcttGAATAATGCAAACTTTTTATTGGAATGTTAAAAG
CCAATATCATTGAATTATGGCATGTCGTTAAGTCCAGGGCCTCATAAACA
CGACGTTCGTTGAGTTGCTCTTAGAATGTAACACATTGCNNNNNNNNNNN
NNNNNNAGTCCAGGGCCTCATAAACACGACGTTCGTTGAGTTGCTCTTAG
AATGTAACAcattgcttttggaagattgtttaatggattataaaagatca
ttttcttatttaaatAAGAAAGAATAcgtttccacggttcgtacgttgaa
catgggaaatatgaaacaatcAATCAAAATTAGCACCCCTTGCATCGACA
ACATACCATATCTATCCTTTCAAAAAGTGATAATTCTTTGTCAAAGAATG
ATGCTCGCTTTAGAATTTGTGTAGGAAATTTtaaagtgtatgcagttgcc
tttctcatacagatttgaaAAAGTGTANCTCGCTTTAGAATTTGTGtagg
aaattttaaatcaagtgtatgcagttgcctttctcatacagatttgaaAA
AGTGTAAGGTTTTTGACTTCGTGCCAAAAAAAGAACTTGttttaaatgaa
acaaaactgtcaAATATACGAAAACATACCTTCTCAGATAGTTGCTTTTG
GTTTCCTCTTGAACATTATGATATTGTTAATTTTGAGCTGCTAAAAGTAA
TCTAGTATCGAAAGAATGGGTCATCTCCAGAAAAACTATCGTTATTCGTC
GTCTataaactttgcatattcaactctgtttgaCGTTGTTCCTTTCCATC
GATATCAACAATCTTAAGtgaaataaagaacaaagaccagaaagcagagt
gatttttgatacacataagaaacataatattttcttgaataaaaaaagcC
ACAGCTTTTTAAATTCCAT Run BLAST on NCBI transcript from alignment at scaffold_237:503277..505361- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053984 ID=TCONS_00053984|Name=TCONS_00053984|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at scaffold_237:503277..505361- (Clytia hemisphaerica)
CAATAATCTTAAATGAAATAAAGAACAAAGGCCAGAAAGCAGAGTGATTT
TTGATAAACATAAGAAACATAATATTTTCTTGAATAAAAAAGCCACAGCT
TTTTAAATTCCATTTATCCTACCACAAACAATAAGGTTTATCATTTGAGA
GCATCATTTTTACAAAAGGAGATTTTTACAAGAATAAGAAGCATCCCTTT
TCAAAAATTATAGCTTGAATAATGCAAACTTTTTATTGGAATGTTAAAAG
CCAATATCATTGAATTATGGCATGTCGTTAAGTCCAGGGCCTCATAAACA
CGACGTTCGTTGAGTTGCTCTTAGAATGTAACACATTGCNNNNNNNNNNN
NNNNNNAGTCCAGGGCCTCATAAACACGACGTTCGTTGAGTTGCTCTTAG
AATGTAACACATTGCTTTTGGAAGATTGTTTAATGGATTATAAAAGATCA
TTTTCTTATTTAAATAAGAAAGAATACGTTTCCACGGTTCGTACGTTGAA
CATGGGAAATATGAAACAATCAATCAAAATTAGCACCCCTTGCATCGACA
ACATACCATATCTATCCTTTCAAAAAGTGATAATTCTTTGTCAAAGAATG
ATGCTCGCTTTAGAATTTGTGTAGGAAATTTTAAAGTGTATGCAGTTGCC
TTTCTCATACAGATTTGAAAAAGTGTANCTCGCTTTAGAATTTGTGTAGG
AAATTTTAAATCAAGTGTATGCAGTTGCCTTTCTCATACAGATTTGAAAA
AGTGTAAGGTTTTTGACTTCGTGCCAAAAAAAGAACTTGTTTTAAATGAA
ACAAAACTGTCAAATATACGAAAACATACCTTCTCAGATAGTTGCTTTTG
GTTTCCTCTTGAACATTATGACATTGTTAATATTGAGCTGCTAAAAGTAC
TCTAGTATCGAAAGAATGGGTCATCTCCAGAGAAACTATCGTTATTCGTC
GTCTATAAACTTTGCATATTCAACTCTGTTTGACGTTGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTCTTAAATGAAATAAAGAACAAAGACCA
GAAAGCAGAGTGATTTTTGATAAACATAAGAAACATAATATTTTCTTGAA
TAAAAAAAGCCACAGCTTTTTGAATTCCATTTATCCTACCACAAACAATA
AGGTTTATCATTTGAGAGCATCATTTTTACAAATGAAGGTTTTTACAAGA
ATAAGAAGCATCCCTTTTCAAAAATTATAGCTTGAATAGTGCAAACTTTT
CATTGGAATGTTAAAAGCCAATATCATTGAATAATGGCATGTCGTTAAGT
CCAGGGCCTCATAAACACGACGTTCGTTGAGTTGCTCTTAGAATGTAACA
CATTGCTTTTGGAAGATTGTTTAATGGATTATAAAAGATCATTTTCTTAT
TTGAGTAAGAAAGAATACGTTTCCACGGTTCGTACGTTGAACATGGGAAA
TATGAAACAATCAACCAAAATTAGCACCCCTTGCATCGACAACATACCAT
ATCTATCCTTTCAAAAAGTGATACTTTTTTGTCAAAGAATGATGCTCGCT
TTAGAATTTGTGTAGGAAATTTTAAATCAAGTGTATGCAGTTGCCTTTCT
CATACAGATTTGAAAAACTGTAAAGTTTTTGACTTGGTGCCAAAAAAAGA
GCTTGTTTTAAATGAAACAAAACTGTCAAATATACGAAAGCATACCTTTT
CAGATAGTTGCTTTTGGTTTCCTCTTGAACATTATGATATTGTTAATTTT
GAGCTGCTAAAAGTAATCTAGTATCGAAAGAATGGGTCATCTCCAGAAAA
ACTATCGTTATTCGTCGTCTATAAACTTTGCATATTCAACTCTGTTTGAC
GTTGTTCCTTTCCATCGATATCAACAATCTTAAGTGAAATAAAGAACAAA
GACCAGAAAGCAGAGTGATTTTTGATACACATAAGAAACATAATATTTTC
TTGAATAAAAAAAGCCACAGCTTTTTAAATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053984-exon-scaffold_237-1575043694:504498..505361 | TCONS_00053984-exon-scaffold_237-1575043694:504498..505361 | Clytia hemisphaerica | exon |
| TCONS_00053984-exon-scaffold_237-1575043694:503277..503531 | TCONS_00053984-exon-scaffold_237-1575043694:503277..503531 | Clytia hemisphaerica | exon |
| TCONS_00053984-exon-scaffold_237-1510915933:504498..505361 | TCONS_00053984-exon-scaffold_237-1510915933:504498..505361 | Clytia hemisphaerica | exon |
| TCONS_00053984-exon-scaffold_237-1510915933:503277..503531 | TCONS_00053984-exon-scaffold_237-1510915933:503277..503531 | Clytia hemisphaerica | exon |
| TCONS_00053984-exon-scaffold_237-1491911889:504498..505361 | TCONS_00053984-exon-scaffold_237-1491911889:504498..505361 | Clytia hemisphaerica | exon |
| TCONS_00053984-exon-scaffold_237-1491911889:503277..503531 | TCONS_00053984-exon-scaffold_237-1491911889:503277..503531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:503277..505361 - |
Blast
The following BLAST results are available for this feature:
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