TCONS_00053989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053989
Unique NameTCONS_00053989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053989 ID=TCONS_00053989|Name=TCONS_00053989|organism=Clytia hemisphaerica|type=transcript|length=358bp
ggaaaatttaagaaatgtGTCCAAAATAGGACAACCACAAAAATTAAGTC
CCGcaatctttccaattttttttcaaccgcTAAAGTTAGTTCCCTTAACA
AAACTTTAATTCTCATTTCATGCTTTCTATGTAGAATATATTTTGTGAAA
GTTCTTCCATTAAATCCATACCTTGAACATGAAATAAGTCGCACTCATAC
AACCTTTTGTGATAAAAATACACCAAGTTAGATAGCCGCTGTTTCCTCTG
CTGAAGTTCCTATATTCCAAATCCATACAATGATTTCTATCAAACTATGC
TACATAACAttcaaaaaacttcagttctttTAATCAACAgctacattttc
aaaaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_237:44504..44861

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053989 ID=TCONS_00053989|Name=TCONS_00053989|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at scaffold_237:44504..44861 (Clytia hemisphaerica)
atttttttgaaaatgtagcTGTTGATTAaaagaactgaagttttttgaaT
GTTATGTAGCATAGTTTGATAGAAATCATTGTATGGATTTGGAATATAGG
AACTTCAGCAGAGGAAACAGCGGCTATCTAACTTGGTGTATTTTTATCAC
AAAAGGTTGTATGAGTGCGACTTATTTCATGTTCAAGGTATGGATTTAAT
GGAAGAACTTTCACAAAATATATTCTACATAGAAAGCATGAAATGAGAAT
TAAAGTTTTGTTAAGGGAACTAACTTTAgcggttgaaaaaaaattggaaa
gattgCGGGACTTAATTTTTGTGGTTGTCCTATTTTGGACacatttctta
aattttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034074XLOC_034074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053989-exon-scaffold_237-1491911889:44504..44861TCONS_00053989-exon-scaffold_237-1491911889:44504..44861Clytia hemisphaericaexon
TCONS_00053989-exon-scaffold_237-1510915933:44504..44861TCONS_00053989-exon-scaffold_237-1510915933:44504..44861Clytia hemisphaericaexon
TCONS_00053989-exon-scaffold_237-1575043694:44504..44861TCONS_00053989-exon-scaffold_237-1575043694:44504..44861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:44504..44861 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.238106	0	2.15676	1.05503	0.642197	0	0.612245	0	0	0	0	0	0.158357	0.493364	0	0	0	0.183208	0	0	0	0	0	0	0	0	0.32649	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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