TCONS_00053997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053997
Unique NameTCONS_00053997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053997 ID=TCONS_00053997|Name=TCONS_00053997|organism=Clytia hemisphaerica|type=transcript|length=250bp
cttgctCTTTCAAGCATTCGTCAGTTAGTTTAAACTAGGAAAAAATGTTT
CTCCGTTTATTTATGAACTATAATTCGAAATTGAAATATCTGCACATAAA
AGAAAAGCTGAAGGCGGAACTAAAATTCTGGACACTGTGAAACCTCAACT
TCCGAAAGTGcgaaaactggacaaaacagctgtttctggctgaaaaacac
tgaaaaacactgtttttaaggattaatatctcgagttaggtaaagaaatc
Run BLAST on NCBI

transcript from alignment at scaffold_237:211767..212016

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053997 ID=TCONS_00053997|Name=TCONS_00053997|organism=Clytia hemisphaerica|type=transcript|length=250bp|location=Sequence derived from alignment at scaffold_237:211767..212016 (Clytia hemisphaerica)
gatttctttacctaactcgagatattaatccttaaaaacagtgtttttca
gtgtttttcagccagaaacagctgttttgtccagttttcgCACTTTCGGA
AGTTGAGGTTTCACAGTGTCCAGAATTTTAGTTCCGCCTTCAGCTTTTCT
TTTATGTGCAGATATTTCAATTTCGAATTATAGTTCATAAATAAACGGAG
AAACATTTTTTCCTAGTTTAAACTAACTGACGAATGCTTGAAAGagcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034082XLOC_034082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053997-exon-scaffold_237-1491911889:211767..212016TCONS_00053997-exon-scaffold_237-1491911889:211767..212016Clytia hemisphaericaexon
TCONS_00053997-exon-scaffold_237-1510915933:211767..212016TCONS_00053997-exon-scaffold_237-1510915933:211767..212016Clytia hemisphaericaexon
TCONS_00053997-exon-scaffold_237-1575043694:211767..212016TCONS_00053997-exon-scaffold_237-1575043694:211767..212016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:211767..212016 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.91534	3.92277	5.74433	9.83246	23.6761	18.2798	13.4444	13.0031	13.3282	13.4228	8.93985	11.4132	9.54325	6.53198	9.10435	10.9888	6.60014	14.3627	10.1563	6.11089	20.3822	31.857	5.89763	8.30412	6.41157	1.77367	22.1441	25.6378	38.595	47.768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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